Oceanography Commons^™

Accurate Classification Of Juvenile Weakfish Cynoscion Regalis To Estuarine Nursery Areas Based On Chemical Signatures In Otoliths, Simon R. Thorrold, Cynthia M. Jones, Peter K. Swart, Timothy E. Targett

OES Faculty Publications

We investigated the ability of trace element and isotopic signatures in otoliths to record the nursery areas of juvenile (young-of-the-year) weakfish Cynoscion regalis from the east coast of the USA. Juvenile C. regalis were captured with otter trawls at multiple sites in Doboy Sound (Georgia), Pamlico Sound (North Carolina), Chesapeake Bay (Virginia), Delaware Bay (Delaware) and Peconic Bay (New York), from July to September 1996. One sagittal otolith from each specimen was assayed for Mg/Ca, Mn/Ca, Sr/Ca and Ba/Ca ratios using inductively coupled plasma mass spectrometry (ICP-MS), while delta 13 C and delta 18 O values from the other sagittal …

Estimate Of Bottom And Surface Stress During A Spring-Neap Tide Cycle By Dynamical Assimilation Of Tide Gauge Observatons In The Chesapeake Bay, Y. H. Spitz, J. M. Klinck

CCPO Publications

Dynamical assimilation of surface elevation from tide gauges is investigated to estimate the bottom drag coefficient and surface stress as a first step in improving modeled tidal and wind-driven circulation in the Chesapeake Bay. A two-dimensional shallow water model and an adjoint variational method with a limited memory quasi-Newton optimization algorithm are used to achieve this goal. Assimilation of tide gauge observations from 10 permanent stations in the Bay and use of a two-dimensional model adequately estimate the bottom drag coefficient, wind stress, and surface elevation at the Bay mouth. Subsequent use of these estimates in the circulation model considerably …

Separating Baroclinic Flow From Tidally Induced Flow In Estuaries, Chunyan Li, Arnoldo Valle-Levinson, Kuo Chuin Wong, Kamazima M. M. Lwiza

CCPO Publications

A simple method is used to separate the tidally induced and density-driven subtidal flows in a coastal plain estuary. This method is applicable to weak wind conditions and to systems with appreciable fortnightly variation of tidal amplitude. The baroclinic density-driven motion is assumed to depend on the river discharge, which generates a horizontal density gradient, and is weakened by vertical mixing, which in turn depends on tidal forcing. The barotropic tidally induced motion is assumed to be a function of the tidal amplitude. By Taylor series expansions, two equations are obtained. These equations show the dependence of the tidally induced …

Modeling Environmental Effects On Msx Prevalence And Intensity In Eastern Oyster (Crassostrea Virginica) Populations, Michelle Christine Paraso

OES Theses and Dissertations

An oyster population model coupled with a model for Haplosporidium nelsoni, the causative agent of the oyster disease MSX, was used with salinity time-series constructed from Delaware River flow measurements to study environmentally-induced variations in the annual cycle of this disease. Simulations with this model were designed to investigate the effect of increased or decreased spring freshwater discharge, the timing of high freshwater runoff, the presence or absence of a fall or late spring phytoplankton bloom, and the occurrence of a warm winter on MSX prevalence and intensity in Delaware Bay oyster populations. Model simulations for the lower Bay site …

Studies Of Warm-Core Rings Using A Particle-In-Cell Method, John James Holdzkom Ii

OES Theses and Dissertations

A particle-in-cell (PIC) model is developed and applied to problems involving the evolution of warm-core rings. Such models are a hybrid of conventional Eulerian and Lagrangian models. They are ideally suited for problems in which a lower layer outcrops to the surface, such as at the boundary of a ring.

The model is developed in three implementations. First, for purposes of model validation, a reduced gravity model is described. The PIC model reproduces the essential characteristics of analytical solutions to the reduced gravity equations and integral invariants are conserved to a high degree. Next, a 1.5-layer model is developed and …

Age, Growth, And Mortality Of Black Drum, Pogonias Cromis, In The Chesapeake Bay Region, Cynthia M. Jones, Brian Wells

OES Faculty Publications

We used otolith ageing to describe the population dynamics of black drum, Pogonias cromis, collected over a three-year period from the Chesapeake Bay region's commercial and recreational fisheries. Black drum average age, total length, and weight were 26 years, 109.5 cm, and 22.1 kg respectively. The oldest fish was 59 years and fish older than 50 years were present in the catch from 1990 to 1992. Growth in length slowed by age 20, whereas growth in weight did not slow until age 45. A von Bertalanffy growth function was fitted to our data (L(infinity) = 117.3 cm, …

The Biogeochemical Cycling Of Dissolved Organic Nitrogen In Estuarine Sediments, David J. Burdige, Shilong Zheng

OES Faculty Publications

Benthic fluxes and pore-water profiles of dissolved organic nitrogen and carbon (DON and DOC, respectively) were determined in seasonal studies at contrasting sites in Chesapeake Bay. Pore-water dissolved organic matter (DOM) concentrations were elevated over bottom-water values, generally increased with depth, and ranged from 15 to similar to 160 μM for DON and ~200-2000 μM for DOC. Pore-water DOM concentrations and the C:N ratio of this material showed spatial (depth) and temporal changes that varied among the sites studied. These trends appeared to be related to differences in the types of sediment organic matter (SOM) undergoing remineralization, as well as …

Iron In Ice Cores From Law Dome, East Antarctica: Implications For Past Deposition Of Aerosol Iron, R. Edwards, Peter N. Sedwick, Vin Morgan, C. F. Boutron, S. Hong

OES Faculty Publications

Total-dissolvable iron has been measured in sections of three ice cores from Law Dome, East Antarctica, and the results used to calculate atmospheric iron deposition over this region during the late Holocene and to provide a preliminary est. of aerosol iron deposition during the Last Glacial Maximum (LGM). Ice-core sections dating from 56-2730 BP (late Holocene) and ∼18 000 BP (LGM) were decontaminated using trace-metal clean techniques, and total-dissolvable iron was determined in the acidified meltwaters by flow-injection analysis. Our results suggest that the atmospheric iron flux onto the Law Dome region has varied significantly over time-scales ranging from seasonal …

Trace Element Signatures In Otoliths Record Natal River Of Juvenile American Shad (Alosa Sapidissima), Simon R. Thorrold, Cynthia M. Jones, Steven E. Campana, James W. Mclaren, Joseph W. H. Lam

OES Faculty Publications

The elemental composition of fish otoliths may represent a permanent record of the environmental conditions an individual has experienced as trace elements, incorporated into the growing surface of the otolith, reflect the physical and chemical characteristics of the ambient water. We tested the utility of trace element signatures in otoliths as natural tags of the river of origin of juvenile American shad (Alosa sapidissima) collected from the Connecticut, Hudson and Delaware Rivers in August and October 1994. Four elements (K, Mn, Sr, and Ba) showed significant variability among sites within rivers in August, although only Mg showed a …

Lead Isotopes And Selected Metals In Ice From Law Dome, Antarctica, K. J. R. Rosman, W. Chisholm, C. F. Boutron, S. Hong, R. Edwards, Vin Morgan, Peter N. Sedwick

OES Faculty Publications

The isotopic composition. of Pb and the concentrations of Pb, Ba and Bi were measured in selected ice-core samples from Law Dome, East Antarctica, to a depth of 1196 m. The range of concentrations found in decontaminated ice was 0.03-1.5 pg g^-1 for Pb, 0.9-6.1 pg g^-1 for Ba and 0.4-17 fg g^-1 for Bi, excluding the deepest sample which contained ∼1 ppm of rock dust. The abundances of all four stable lead isotopes were measured and gave ²⁰⁶Pb/²⁰⁷Pb ratios ≤ ∼1.23. A value of ²⁰⁸Pb/²⁰⁷Pb = 2.78 was measured in …

Heat And Salt Changes On The Continental Shelf West Of The Antarctic Peninsula Between January 1993 And January 1994, John M. Klinck

CCPO Publications

Hydrographic measurements from four cruises between January 1993 and January 1994 over the continental shelf west of the Antarctic Peninsula allow analysis of seasonal changes in heat and salt content of this region. Changes above the permanent pycnocline (about 150 m) follow a seasonal pattern of cooling and increasing in salt from summer to winter and warming and freshening from winter to summer. These near-surface changes expressed as net heating or salting rate, were above 80 W m(-2) and 4 mg salt m(-2) s(-1). The year to year difference was small compared to the seasonal changes. There was no seasonal …

Sigma Coordinate Pressure Gradient Errors And The Seamount Problem, George L. Mellor, Lie-Yauw Oey, Tal Ezer

CCPO Publications

In a recent paper by Mellor et al., it was found that, in two-dimensional (x, z) applications with finite horizontal viscosity and zero diffusivity, the velocity error, associated with the evaluation of horizontal density or pressure gradients on a sigma coordinate grid, prognostically disappeared, leaving behind a small and physically insignificant distortion in the density field. The initial error is numerically consistent in that it decreases as the square of the grid increment size. In this paper, we label this error as a sigma error of the first kind. In three-dimensional applications, the authors have encountered an error that did …

Integrable Unsteady Motion With An Application To Ocean Eddies, A. D. Kirwan Jr., Bruce L. Lipphardt

CCPO Publications

Application of the Brown-Samelson theorem, which shows that particle motion is integrable in a class of vorticity-conserving, two-dimensional incompressible hows, is extended here to a class of explicit time dependent dynamically balanced flows in multilayered systems. Particle motion for nonsteady two-dimensional flows with discontinuities in the vorticity or potential vorticity fields (modon solutions) is shown to be integrable. An example of a two-layer modon solution constrained by observations of a Gulf Stream ring system is discussed.

Understanding The Success And Failure Of Oyster Populations: The Importance Of Sampled Variables And Sample Timing, Thomas M. Soniat, Eric N. Powell, Eileen E. Hofmann, John M. Klinck

CCPO Publications

One of the primary obstacles to understanding why some oyster populations are successful and others are not is the complex interaction of environmental variables with oyster physiology and with such population variables as the rates of recruitment and juvenile mortality. A numerical model is useful in investigating how population structure originates out of this complexity. We have monitored a suite of environmental conditions over an environmental gradient to document the importance of short time-scale variations in such variables as food supply, turbidity, and salinity. Then, using a coupled oyster disease population dynamics model, we examine the need for short rime-scale …

Non-Volatile Dissolved Organic Iodine In Marine Water, Xianhao Cheng

OES Theses and Dissertations

An analytical scheme for the determination of marine DOI has been established. The concentration of DOI is estimated as total iodine (TI) minus total inorganic iodine (TII). The concentration of total iodine is determined as [special characters omitted] after DOI has been oxidized to inorganic iodine quantitatively by intensive UV-irradiation and all the inorganic iodine in the samples had been converted to [special characters omitted] by the addition of NaClO.

Production of DOI in seawater can be via both non-phytoplankton and phytoplankton related processes. In the former, iodide is converted to DOI. In the latter, most likely, iodate is converted …

Data Assimilation Experiments In The Gulf Stream Region: How Useful Are Satellite-Derived Surface Data For Nowcasting The Subsurface Fields?, Tal Ezer, George L. Mellor

CCPO Publications

Satellite-derived surface data have become an important source of information for studies of the Gulf Stream system. The question of just how useful these datasets are for nowcasting the subsurface thermal fields, however, remains to be fully explored. Three types of surface data-sea surface temperature (SST), sea surface height (SSH), and Gulf Stream position (GSP)-are used here in a series of data assimilation experiments to test their usefulness when assimilated into a realistic primitive equation model. The U.S. Navy's analysis fields from the Optimal Thermal Interpolation System are used to simulate the surface data and to evaluate nowcast errors. Correlation …

Tidally Driven Residual Circulation In Shallow Estuaries With Lateral Depth Variation, Chunyan Li, James O'Donnell

CCPO Publications

Tidally driven residual circulation in shallow estuaries with lateral depth variation has been studied analytically using a two-dimensional, depth-averaged model. The solution is presented for a v-shaped channel. Exchange flow is found to be correlated with the topography. The magnitude of this exchange flow depends mainly on four parameters: the ratio between the minimum depth on the shoal and the maximum depth in the channel, the ratio between the tidal amplitude at the mouth and the mean depth, the ratio between the length of the estuary and the tidal wave length, and the ratio between the tidal timescale and the …

Vertical Profiles Of Bromoform In Snow, Sea Ice, And Seawater In The Canadian Arctic, William T. Sturges, Glenn F. Cota, Paul T. Buckley

CCPO Publications

Bromoform (CHBr₃) was measured in vertical profiles from the snow surface through the snowpack, sea ice, and water column to the seafloor at Resolute Bay, Canada, in the sprig of 1992. Elevated concentrations of bromoform were observed in both the ice (32-266 ng L^-1 by liquid water volume) and seawater (~ 20 ng L^-1 ) at the ice-water interface, associated with bromoform emission from ice microalgae. A surprising finding was a second horizon of high bromoform concentrations (336-367 ng L^-1) in sea ice at the snow-ice interface. Chlorophyll and salinity were also elevated in …

Resuspension And Transport Of Fine Sediments By Waves, Chiang C. Mei, She-Jun Fan, Kang-Ren Jin

OES Faculty Publications

Although waves are the primary cause of sediment resuspension in the nearshore zone, in existing theoretical models, long-scale currents induced by the mean wind are often taken to be the only agent for the diffusion and convection of resuspended sediments. We present here theoretical examples where waves play a direct role in all aspects of sediment transport. Details are given for the simple case where only waves are present; the wave-induced current and diffusivity are shown to be no less important than similar factors in the wind-driven current. Hence, in a comprehensive model, one should include not only the current …

Simulations Of The Atlantic Ocean With A Free Surface Sigma Coordinate Ocean Model, Tal Ezer, George L. Mellor

CCPO Publications

A sigma coordinate, free surface numerical model with turbulence dynamics has been implemented for the Atlantic Ocean and the Greenland Sea, from 80°S to 80°N. It is driven at the surface by monthly mean sea surface temperature and wind stress climatologies and is executed for 30 years. This is the first time that a model of this type, previously used mostly for coastal and regional simulations, has been implemented for the entire Atlantic Ocean and run for a long period of time. The model horizontal circulation, thermohaline overturning circulation, and meridional heat fluxes are described; the results are compared with …

Ecology Of The Early Life History Of The Caribbean Spiny Lobster, Panulirus Argus: Recruitment, Predation, And Habitat Requirements, Charles A. Acosta

Biological Sciences Theses & Dissertations

Recruitment variability of the early life history stages of marine benthic organisms can have profound consequences on population dynamics. I studied factors affecting recruitment success of postlarvae and early juveniles of the Caribbean spiny lobster. I examined patterns in postlarval supply, investigated wind forcing as a potential transport mechanism for recruiting postlarvae, and quantified predation on postlarvae in south Florida, USA. In an eight-year time series, spiny lobster postlarval supply occurred year-round between the new and first quarter lunar phases. The major annual peak occurred around March corresponding to spawning activity ten months earlier, and a smaller non-seasonal peak occurred …

Microzooplankton Dynamics In Lower Chesapeake Bay And Its Major Tributaries, Gyung Soo Park

Biological Sciences Theses & Dissertations

This study identified the temporal and spatial variability of microzooplankton density and biomass at 14 stations located within Chesapeake Bay and four rivers. Microzooplankton are defined as those heterotrophic organisms which range from 20 to 200 $\mu$m in size, and in this study were mainly composed of copepod nauplii, rotifers, and ciliates. Ciliates were the most abundant microzooplankton, comprising more than 90% of the total density, with copepod nauplii representing approximately 50% of the total microzooplankton biomass (carbon content). Rotifers contributed less than 5% for both density and biomass of the total microzooplankton.

Maximum ciliate abundance occurred from spring to …

Influence Of Physics On The Distribution Of Ichthyoplankton Across The Chesapeake Bay Plume, Christian S. Reiss

OES Theses and Dissertations

Most marine fish have retained pelagic larval stages that are spawned away from juvenile habitats. Physical and biological processes on a number of scales may affect larval survival. Mesoscale features like estuarine or riverine plumes and fronts are thought to affect larval survival by transporting larvae to juvenile habitats or by retaining larvae in favorable developmental habitats. It is likely that these features are major contributors in the regulation of shelf-spawned estuarine-dependent taxa.

This study examined how physical oceanographic features affected the spatial distribution of ichthyoplankton across the Chesapeake Bay Plume. Larval surveys were conducted across the shelf and within …

Modeling Plankton Community Structure Under Environmental Forcing On The Southeastern United States Continental Shelf, Andrew Glenn Edward Haskell

OES Theses and Dissertations

A system of coupled ordinary differential equations was developed to investigate the time-dependent behavior of phytoplankton, copepod, and doliolid populations associated with upwelling features on the outer southeastern U.S. continental shelf. Model equations describe the interactions of nitrate, ammonium, two phytoplankton size fractions, five copepod developmental stages, doliolids, and a detrital pool. Model dynamics are based primarily upon data obtained from field and laboratory experiments made for southeastern U.S. continental shelf plankton populations. Numerous simulations were performed to investigate the effects of environmental variability on the temporal distribution of the structure of resident plankton populations. Variations on a reference simulation, …

Distribution Of Free Marine Viruses Of Lower Chesapeake Bay And Their Effects On Life-History Parameters Of The Estuarine Copepod Acartia Tonsa Dana, Lisa A. Drake

OES Theses and Dissertations

Naturally occurring viruses are very abundant in fresh, estuarine, and marine waters, with densities on the order of 10⁵-10⁸ viruses ml^-1. Research has focused on virus effects on bacteria, cyanobacteria, and phytoplankton, as well as mechanisms of virus production and decay. However, little is known about the distribution of viruses in benthic environments or virus effects on organisms in higher trophic levels.

To determine the distribution of virus-like particles (VLPs) and bacteria in the lower Chesapeake Bay, vertical profiles of VLPs and bacteria were determined through the water column and 15-25 cm into the sediment …

Fluxes Of Copper-Complexing Ligands From Estuarine Sediments, Stephen A. Skrabal, John R. Donat, David J. Burdige

OES Faculty Publications

Most studies of the organic complexation of Cu in natural waters have focused on distributions and processes in the water column, where a significant fraction of Cu-complexing ligands may be biologically produced. We present direct evidence for a flux of Cu-complexing ligands from estuarine sediments, demonstrating that sediments are a significant, yet previously unrecognized source of the ligands. Fluxes of Cu-complexing ligands from Chesapeake Bay sediments range from 300 to 1,200 nmol m^-2 d^-1, exceeding fluxes of total dissolved Cu by 3->40-fold, suggesting that any Cu fluxing from the sediments is likely to be organically complexed. …

Yield-Per-Recruit Analysis And Management Strategies For Atlantic Croaker, Micropogonias Undulatus, In The Middle Atlantic Bight, Luiz R. Barbieri, Mark E. Chittenden, Cynthia M. Jones

OES Faculty Publications

The effect of different fishing mortality (F) and natural mortality (M), and age at first capture (t(c)) on yield-per-recruit of Atlantic croaker, Micropogonias undulatus, in the lower Chesapeake Bay and North Carolina were evaluated with the Beverton-Holt model. Independent of the level of M (0.20-0.35) or F (0.01-2.0) used in simulations, yield-per-recruit values for Chesapeake Bay were consistently higher at t((c)) = 1 and decreased continuously with increases in t(c) (2-5). Although maximum yield-per-recruit always occurred at the maximum level off (F=2.0), marginal increases in yield beyond F = 0.50-0.75 were negligible. Current F (F(CUR)) is estimated to be …

Age And Growth Of Larval And Juvenile Atlantic Croaker, Micropogonias Undulatus, From The Middle Atlantic Bight And Estuarine Waters Of Virginia, Stephen W. Nixon, Cynthia M. Jones

OES Faculty Publications

Sagittal otoliths were used to determine age and growth of 605 larval and juvenile Atlantic croaker, Micropogonias undulatus, collected in the Middle Atlantic Bight and estuarine waters of Virginia. This study is the first to use age-based analysis for young Atlantic croaker collected in this region. A Laird-Gompertz model (r2=0.95) was used to describe the growth of Atlantic croaker up to 65 mm standard length (SL) and 142 days (t): SL((t)) = 2.657 exp (4.656 [1-exp (-0.0081t)]); where SL((t)) = standard length at day t. Spatial and temporal patterns in the size and age of Atlantic croaker showed a …

Response Of Otolith Microchemistry To Environmental Variations Experienced By Larval And Juvenile Atlantic Croaker (Micropogonias Undulatus), Simon R. Thorrold, Cynthia M. Jones, Steven E. Campana

OES Faculty Publications

Minor and trace elements incorporated into otoliths during growth may permanently record environmental conditions experienced by fishes. To determine the validity of this approach, we used laser ablation inductively coupled plasma mass spectrometry (LA-ICPMS) to assay sectioned otoliths from juvenile Atlantic croaker (Micropogonias undulatus) collected from each of three sites in the Neuse River, North Carolina, and the Elizabeth River, Virginia. Elemental concentrations at the center of the otoliths did not differ between locations, although both Mg : Ca and Ba : Ca were significantly higher at the edge of otoliths from the Neuse River than from the …

Destruction Of Chloropigments In Copepod Guts, A. B. Bochdansky, D. Deibel

OES Faculty Publications

In a recent account regarding the destruction of chloropigments within the guts of copepods, Head & Harris (1996) (H&H) presented valuable data on pigment destruction in copepods. However, in one of their main conclusions, the authors invoked 2 enzyme pools to explain the pattern of pigment destruction: one directly derived from copepods, the other one produced by the ingested algae. If this conclusion is correct, it would have tremendous impact on the interpretation of data collected by the gut pigment technique. Estimating ingestion rates of copepods in the field would be very difficult, if not impossible, if pigment destruction was …