Oceanography Commons^™

Fish Diversity And Coral Health Of Tanzania's Reefs: A Comparative Study Between The Ushongo Village Reef And The Fungu Zinga Reef Over Time, Della Turque, Corinne Casper

Independent Study Project (ISP) Collection

The world’s oceans are becoming increasing acidic due to global climate change, posing a threat to marine ecosystems, including coral carbonate systems. Environmental threats are exacerbated by human development stressors as well: growing populations, dependency on marine resources, and unsustainable practices invaluable marine ecosystems at risk. Tanzania’s coral reef system extends for 3580 km2 (Muhando et al. 2008) near the Tanga region, serving over half a million people who are highly dependent on fishing and other marine resources as their livelihoods (Samoilys et. al. 2008). With Tanzania’s population rapidly growing, the unsustainable pressure on coral reefs for sustenance and livelihood …

The Effects Of Sub-Lethal Predation On The Reproductive Output Of Acanthaster Planci (Crown-Of-Thorns Starfish), Emily Mucha

Independent Study Project (ISP) Collection

Wide-scale declines in live coral cover have been observed throughout history. Modern day coral populations face a multitude of environmental disturbances, however one of the most devastating to the reefs in the Indo-Pacific is the crown-of-thorns starfish (Acanthaster planci), which feeds on the tissues of live corals. The rate at which these individuals feed combined with the explosion of populations in times of outbreak have been seen to exert some of the biggest pressures on coral reefs to date. Following recent episodes of crown-of-thorns starfish (COTS) outbreaks, research on the organism has become increasingly prevalent on the scientific …

Effects Of Temperature, Irradiance And Pco2 On The Growth And Nitrogen Utilization Of Prorocentrum Donghaiense, Zhangxi Hu, Margaret R. Mulholland, Ning Xu, Shunshan Duan

OES Faculty Publications

Environmental factors such as temp erature, irradiance, and nitrogen (N) supply affect the growth of Prorocentrum donghaiense, but the interactive effects of these physical factors and the effects of atmospheric CO₂ (pCO₂) on growth and N uptake have not been examined. We compared growth kinetics of P. donghaiense grown on 4 different N substrates (nitrate [NO₃ -], ammonium [NH₄ +], urea, and glutamic acid [glu]) with respect to temperature, irradiance, and pCO₂. Temperature (15 to 30°C) had a positive effect on growth (max. growth rates: 0.17 to 0.65 d …

Geospatial Approaches To Support Pelagic Conservation Planning And Adaptive Management, L. M. Wedding, Sara M. Maxwell, D. Hyrenbach, D. C. Dunn, J. J. Roberts, D. Briscoe, E. Hines, P. N. Halpin

Biological Sciences Faculty Publications

Place-based management in the open ocean faces unique challenges in delineating boundaries around temporally and spatially dynamic systems that span broad geographic scales and multiple management jurisdictions, especially in the 'high seas'. Geospatial technologies are critical for the successful design of pelagic conservation areas, because they provide information on the spatially and temporally dynamic oceanographic features responsible for driving species distribution and abundance in the open ocean, the movements of protected species, and the spatial patterns of distribution of potential threats. Nevertheless, there are major challenges to implementing these geospatial approaches in the open ocean. This Theme Section seeks to …

Historical Processes And Contemporary Ocean Currents Drive Genetic Structure In The Seagrass Thalassia Hemprichii In The Indo-Australian Archipelago, Udhi E. Hernawan, Kor-Jent Van Dijk, Gary A. Kendrick, Ming Feng, Edward Biffin, Paul Lavery, Kathryn Mcmahon

Research Datasets

Understanding spatial patterns of gene flow and genetic structure is essential for the conservation of marine ecosystems. Contemporary ocean currents and historical isolation due to Pleistocene sea-level fluctuations have been predicted to influence the genetic structure in marine populations. In the Indo-Australian Archipelago (IAA), the world's hotspot of marine biodiversity, seagrasses are a vital component but population genetic information is very limited. Here, we reconstructed the phylogeography of the seagrass Thalassia hemprichii in the IAA based on single nucleotide polymorphisms (SNPs) and then characterised the genetic structure based on a panel of 16 microsatellite markers. We further examined the relative …

Macrobenthic Communities In The Northern Gulf Of Mexico Hypoxic Zone: Testing The Pearson-Rosenberg Model, Shivakumar Shivarudrappa

Dissertations

The Pearson and Rosenberg (P-R) conceptual model of macrobenthic succession was used to assess the impact of hypoxia (dissolved oxygen [DO] ≤ 2 mg/L) on the macrobenthic community on the continental shelf of northern Gulf of Mexico for the first time. The model uses a stress-response relationship between environmental parameters and the macrobenthic community to determine the ecological condition of the benthic habitat. The ecological significance of dissolved oxygen in a benthic habitat is well understood. In addition, the annual recurrence of bottom-water hypoxia on the Louisiana/Texas shelf during summer months is well documented.

The P-R model illustrates the decreasing …

8000 Years Of Environmental Evolution Of Barrier–Lagoon Systems Emplaced In Coastal Embayments (Nw Iberia), Rita González-Villanueva, Marta Pérez-Arlucea, Susana Costas, Roberto Bao, Xose L. Otero, Ronald J. Goble

Department of Earth and Atmospheric Sciences: Faculty Publications

The rocky and indented coast of NW Iberia is characterized by the presence of highly valuable and vulnerable, small and shallow barrier– lagoon systems structurally controlled. The case study was selected to analyse barrier–lagoon evolution based on detailed sedimentary architecture, chronology, geochemical and biological proxies. The main objective is to test the hypothesis of structural control and the significance at regional scale of any highenergy event recorded. This work is also aimed at identifying general patterns and conceptualizing the formation and evolution of this type of coastal systems. The results allowed us to establish a conceptual model of Holocene evolution …

Crowdsourcing Global Wastewater Data, Don Mosteller, Sam Cohen, Cory Nestor, Angel Hsu, Omar Malik

Yale Day of Data

No time to waste: Crowdsourcing global wastewater treatment data

Worldwide, over 80 percent of wastewater is discharged into water bodies without undergoing treatment, severely impairing human well-being and ecosystem vitality along the way. National performance on wastewater treatment is difficult to quantify and is poorly understood due to a lack of common definitions, poor data collection standards, and limited historical data. To address this, the Yale Environmental Performance Index (EPI), a research group that produces a biennial ranking of country-level environmental performance, developed a first-of-its kind national wastewater treatment indicator.[1]

The indicator assesses wastewater treatment performance for 183 countries, …

Contrasting Environmental Drivers Of Adult And Juvenile Growth In A Marine Fish: Implications For The Effects Of Climate Change, Joyce Jia Lin Ong, Adam Nicholas Rountrey, Jessica Jane Meeuwig, Stephen J. Newman, Jens Zinke, Mark Gregory Meekan

Fisheries Research Articles

Many marine fishes have life history strategies that involve ontogenetic changes in the use of coastal habitats. Such ontogenetic shifts may place these species at particular risk from climate change, because the successive environments they inhabit can differ in the type, frequency and severity of changes related to global warming. We used a dendrochronology approach to examine the physical and biological drivers of growth of adult and juvenile mangrove jack (Lutjanus argentimaculatus) from tropical north-western Australia. Juveniles of this species inhabit estuarine environments and adults reside on coastal reefs. The Niño-4 index, a measure of the status of …

A Survey Of Aquatic Organisms For The Cyanotoxin Beta-Methylamino-L-Alanine (Bmaa), Ian M. Sammler

OES Theses and Dissertations

Cyanobacteria blooms are increasing globally as a result of eutrophication. Many cyanobacteria are potentially harmful, not only because of the oxygen depleted zones created when they decay, but also because of the toxins they produce. β- Methylamino-L-alanine (BMAA), reportedly produced by many species of cyanobacteria, is a non-proteinogenic amino acid that has been linked to the development of neurodegenerative diseases (amyotrophic lateral sclerosis (ALS) and Alzheimer's) in humans. This study presents results from an assessment of BMAA in cyanobacteria and their grazers from the lower Chesapeake Bay and Lake Erie regions. BMAA was analyzed in samples prepared with the EZ:Faast™ …

Comparison Of Fish Assemblages In Restored And Natural Mangrove Habitats Along An Urban Shoreline, Joseph R. Peters, Lauren A. Yeager, Craig A. Layman

Environmental Science and Management Faculty Publications and Presentations

The installation of living shorelines is one strategy used to ameliorate habitat degradation along developed coastlines. In this process, existing hard structures, such as sea walls and riprap revetments, are supplemented with habitat forming species, e.g., oysters and mangrove trees, to improve habitat quality and function. Shoreline restorations in Biscayne Bay, Florida, USA, often utilize red mangroves, Rhizophora mangle (Linneaus, 1753), in addition to riprap revetments, to help stabilize the shoreline. This riprap-mangrove habitat provides structure for marine organisms to utilize and is believed to improve shoreline habitats in areas previously cleared of mangroves. We examined whether habitat provisioning was …

Housatonic Organic Contaminants: Physical Data Archive, Michael M. Whitney

Department of Marine Sciences

This archive includes physical data from a Connecticut Sea Grant Project on organic contaminants in the Housatonic River estuary and Long Island Sound. The data included are water: temperature, salinity, dissolved oxygen, pH, and current velocities. Observations were collected in 2012 and 2013 from the R/V Weicker.

The Relative Importance Of Methanogenesis In The Decomposition Of Organic Matter In Northern Peatlands, J. Elizabeth Corbett, Malak M. Tfaily, David J. Burdige, Paul H. Glaser, Jeffrey P. Chanton

OES Faculty Publications

Using an isotope-mass balance approach and assuming the equimolar production of CO₂ and CH₄ from methanogenesis (e.g., anaerobic decomposition of cellulose), we calculate that the proportion of total CO₂ production from methanogenesis varies from 37 to 83% across a variety of northern peatlands. In a relative sense, methanogenesis was a more important pathway for decomposition in bogs (80 ± 13% of CO₂ production) than in fens (64 ± 5.7% of CO₂ production), but because fens contain more labile substrates they may support higher CH4 production overall. The concentration of CO₂ produced from methanogenesis (CO …

Understanding Ocean Acidification Impacts On Organismal To Ecological Scales, Andreas J. Andersson, David I. Kline, Peter J. Edmunds, Stephen D. Archer, Nina Bednarsek, Robert C. Carpenter, Meg Chadsey, Philip Goldstein, Andrea G. Grottoli, Thomas P. Hurst, Andrew L. King, Janet E. Kübler, Ilsa B. Kuffner, Katherine R.M. Mackey, Bruce A. Menge, Adina Paytan, Ulf Riebesell, Astrid Schnetzer, Mark E. Warner, Richard C. Zimmerman

OES Faculty Publications

Ocean acidification (OA) research seeks to understand how marine ecosystems and global elemental cycles will respond to changes in seawater carbonate chemistry in combination with other environmental perturbations such as warming, eutrophication, and deoxygenation. Here, we discuss the effectiveness and limitations of current research approaches used to address this goal. A diverse combination of approaches is essential to decipher the consequences of OA to marine organisms, communities, and ecosystems. Consequently, the benefits and limitations of each approach must be considered carefully. Major research challenges involve experimentally addressing the effects of OA in the context of large natural variability in seawater …

Living On The Margin In The Anthropocene: Engagement Arenas For Sustainability Research And Action At The Ocean-Land Interface, B. C. Glavovic, K. Limburg, K-K. Liu, K-C. Emeis, H. Thomas, H. Kremer, B. Avril, J. Zhang, M. R. Mulholland, M. Glaser, D. P. Swaney

OES Faculty Publications

The advent of the Anthropocene underscores the need to develop and implement transformative governance strategies that safeguard the Earth's life-support systems, most critically at the ocean-land interface - the Margin. The seaward realm of the Margin is the new frontier for resource exploitation and colonization to meet the needs of coastal nations and humanity overall. Here, we spotlight the pivotal role of the Margin for planetary resilience and sustainability, highlight priority issues, and outline a research strategy which aims to: (a) better understand Margin social-ecological systems; (b) guide sustainable development of Margin resources; (c) design governance regimes to reverse unsustainable …

Imber- Research For Marine Sustainability: Synthesis And The Way Forward, Eileen Hofmann, Alida Bundy, Ken Drinkwater, Alberto R. Piola, Bernard Avril, Carol Robinson

CCPO Publications

The Integrated Marine Biogeochemistry and Ecosystem Research (IMBER) project aims at developing a comprehensive understanding of and accurate predictive capacity of ocean responses to accelerating global change and the consequent effects on the Earth system and human society. Understanding the changing ecology and biogeochemistry of marine ecosystems and their sensitivity and resilience to multiple drivers, pressures and stressors is critical to developing responses that will help reduce the vulnerability of marine-dependent human communities. This overview of the IMBER project provides a synthesis of project achievements and highlights the value of collaborative, interdisciplinary, integrated research approaches as developed and implemented through …

The Simulation & Evaluation Of Surge Hazard Using A Response Surface Method In The New York Bight, Michael H. Bredesen

UNF Graduate Theses and Dissertations

Atmospheric features, such as tropical cyclones, act as a driving mechanism for many of the major hazards affecting coastal areas around the world. Accurate and efficient quantification of tropical cyclone surge hazard is essential to the development of resilient coastal communities, particularly given continued sea level trend concerns. Recent major tropical cyclones that have impacted the northeastern portion of the United States have resulted in devastating flooding in New York City, the most densely populated city in the US. As a part of national effort to re-evaluate coastal inundation hazards, the Federal Emergency Management Agency used the Joint Probability Method …

How The Presence Of Plastic In The North Pacific Gyre Affects The Growth Of Thalassiosira Through Remote Sensing And Laboratory Replication, Jordynn Brennan, Hesham El-Askary

Student Scholar Symposium Abstracts and Posters

Through the use of remote sensing, we are able to determine the approximate location of the garbage patch in the North Pacific Gyre. Though remote sensing does not penetrate the surface of the ocean, monthly satellite images can be analyzed to determine the rate of growth or rate of decrease of certain parameters, such as atmospheric gases, phytoplankton, and dissolved organic matter. Over the past decade, data from the Goddard Earth Sciences Data and Information Services Center (Giovanni program) has shown a significant increase in dissolved organic matter and chlorophyll a content in the area of the North Pacific Garbage …

Protein Recycling In Bering Sea Algal Incubations, Eli K. Moore, H. Rodger Harvey, Jessica F. Faux, David R. Goodlett, Brook L. Nunn

OES Faculty Publications

Protein present in phytoplankton represents a large fraction of the organic nitrogen and carbon transported from its synthesis in surface waters to marine sediments. Yet relatively little is known about the longevity of identifiable protein in situ, or the potential modifications to proteins that occur during bloom termination, protein recycling and degradation. To address this knowledge gap, diatom-dominated phytoplankton was collected during the Bering Sea spring blooms of 2009 and 2010, and incubated under darkness in separate shipboard degradation experiments spanning 11 and 53 d, respectively. In each experiment, the protein distribution was monited over time using shotgun proteomics, …

Iron Sources And Dissolved-Particulate Interactions In The Seawater Of The Western Equatorial Pacific, Iron Isotope Perspectives, M. Labatut, F. Lacan, C. Pradoux, J. Chmeleff, A. Radic, J. W. Murray, F. Poitrasson, Anne M. Johansen, F. Thil

All Faculty Scholarship for the College of the Sciences

This work presents iron isotope data in the western equatorial Pacific. Marine aerosols and top core margin sediments display a slightly heavy Fe isotopic composition (δ⁵⁶Fe) of 0.33 ± 0.11‰ (2SD) and 0.14 ± 0.07‰, respectively. Samples reflecting the influence of Papua New Guinea runoff (Sepik River and Rabaul volcano water) are characterized by crustal values. In seawater, Fe is mainly supplied in the particulate form and is found with a δ⁵⁶Fe between −0.49 and 0.34 ± 0.07‰. The particulate Fe seems to be brought mainly by runoff and transported across continental shelves and slopes. …

Utilizing Remote Sensing To Detect Deepwater Horizon Oil Spill Properties, Amanda Kristedja

e-Research: A Journal of Undergraduate Work

This paper focuses on the detection of oil spills using satellite information. ��For this research project, the focus will be primarily on the Deepwater Horizon Oil Spill, which is the largest accidental oil spill. In order to detect an oil spill, the chlorophyll a content must be observed with data from the SeaWiFs at 9km and the MODIS-aqua at 9km and 4km. There is conflicting evidence of whether or not chlorophyll a concentration is positively correlated with the presence of an oil spill. This will be further investigated in the experiment. Also, by utilizing the MODIS instrument aboard the terra …

Loggerhead Sea Turtle (Caretta Caretta) Hatchling Disorientation In Broward County, Florida, Allison Durland Donahou

HCNSO Student Theses and Dissertations

Hatchling disorientation after emergence is a major factor impacting sea turtle populations. This study utilized data from over 1,200 Florida Fish and Wildlife Conservation Commission (FWC) Marine Turtle Disorientation Report forms from years 2006 to 2011 to assess changes in the severity and locations of disorientation events and the impact of municipal beach lighting ordinances. While the FWC forms were completed for all sea turtle species observed, this study focused only on loggerhead sea turtles (Caretta caretta). A Disorientation Severity Index (DSI) was derived from the number of hatchlings and the direction of their tracks leaving the nests …

Exploring The Link Between Otolith Growth And Function Along The Biological Continuum In The Context Of Ocean Acidification, Eric D. Wilcox Freeburg

Graduate Doctoral Dissertations

Oceans are acidifying as atmospheric CO₂ is drawn down. This process, known as ocean acidification (OA), is well known and documented. Over the next 100 years, pH of the surface ocean is projected to decrease by up to 0.35 units. This CO₂ draw down has a direct effect on dissolved inorganic carbon (DIC) balance in the ocean. OA is expected to impact calcifying organisms that rely on constituencies of the DIC system, specifically carbonate ion [CO₃2-]. It is clear that externally calcified structures, such as coral skeletons, bivalve shells, etc., will be significantly affected as pH, …

Degradable Plastics And Their Potential To Affect Solid Waste Systems, Krista L. Thyberg, David J. Tonjes

Technology & Society Faculty Publications

Plastic waste forms a substantial part of municipal solid waste and has caused environmental concerns, particularly due to chemical contamination of the environment and effects from persistent litter. Plastics also complicate waste management processes, such as by having poor recovery rates through recycling, and causing contamination in composting operations. One potential means to address some of these challenges is through degradable plastics which, unlike conventional plastics, are designed to decompose at an accelerated rate in specific environments. Degradable plastics aim to address the end-of-life of plastic products and are intended to reduce the environmental impacts associated with their use and …

Weekly Gridded Aquarius L-Band Radiometer/Scatterometer Observations And Salinity Retrievals Over The Polar Regions - Part 1: Product Description, L. Brucker, Emmanuel P. Dinnat, L. S. Koenig

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Passive and active observations at L band (frequency similar to 1.4 GHz) from the Aquarius/SAC-D mission offer new capabilities to study the polar regions. Due to the lack of polar-gridded products, however, applications over the cryosphere have been limited. We present three weekly polar-gridded products of Aquarius data to improve our understanding of L-band observations of ice sheets, sea ice, permafrost, and the polar oceans. Additionally, these products intend to facilitate access to L-band data, and can be used to assist in algorithm developments. Aquarius data at latitudes higher than 50 degrees are averaged and gridded into weekly products of …

Detection Of Seagrass Scars Using Sparse Coding And Morphological Filter, Ender Oguslu, Sertan Erkanli, Victoria J. Hill, W. Paul Bissett, Richard C. Zimmerman, Jiang Li, Charles R. Bostater Jr. (Ed.), Stelios P. Mertikas (Ed.), Xavier Neyt (Ed.)

OES Faculty Publications

We present a two-step algorithm for the detection of seafloor propeller seagrass scars in shallow water using panchromatic images. The first step is to classify image pixels into scar and non-scar categories based on a sparse coding algorithm. The first step produces an initial scar map in which false positive scar pixels may be present. In the second step, local orientation of each detected scar pixel is computed using the morphological directional profile, which is defined as outputs of a directional filter with a varying orientation parameter. The profile is then utilized to eliminate false positives and generate the final …

Monitoring Ship Noise To Assess The Impact Of Coastal Developments On Marine Mammals, Nathan D. Merchant, Enrico Pirotta, Tim R. Barton, Paul M. Thompson

Biology - All Scholarship

The potential impacts of underwater noise on marine mammals are widely recognised, but uncertainty over variability in baseline noise levels often constrains efforts to manage these impacts. This paper characterises natural and anthropogenic contributors to underwater noise at two sites in the Moray Firth Special Area of Conservation, an important marine mammal habitat that may be exposed to increased shipping activity from proposed offshore energy developments. We aimed to establish a pre-develop- ment baseline, and to develop ship noise monitoring methods using Automatic Identification System (AIS) and time-lapse video to record trends in noise levels and shipping activity. Our results …

Cosee Ocean Inquiry Group Report: Opportunities For Creating Lifelong Ocean Science Literacy, Paul Boyle, Vince Breslin, Lisa Craig Brisson, John Fraser, Alan J. Friedman, Katie Gardner, Sarah Schoedinger, Jerry Schubel, Steve Uzzo, Steven Yalowitz

School for the Environment General Publications

This Inquiry Group Report for the Centers for Ocean Sciences Education Excellence Ocean Communities in Education And Social Networks (COSEE OCEAN) provides a fresh look at how broader ocean science literacy can be developed, especially through less-recognized channels such as opportunistic learning, the private and “third” sectors, and the enormously varied activities under the heading of informal science education. The 10 authors of this report (see Contributors section) have been working together for two years to find and review a range of issues and resources for current and potential ocean science literacy providers, both professional and volunteer.

Several chapters provide …

Development And Application Of A Gis-Based Long Island Sound Eelgrass Habitat Suitability Index Model, Jamie M.P. Vaudrey, Justin Eddings, Christopher Pickerell, Lorne Brousseau, Charles Yarish

Department of Marine Sciences

The primary objectives of the Eelgrass Habitat Suitability Index Model (EHSI Model) are to assist in the evaluation of sites being considered for eelgrass restoration efforts in the Long Island Sound (LIS) area and to identify areas where water quality issues reduce or eliminate the potential for natural eelgrass colonization. To achieve this goal, geospatial processing of data available from the Long Island Sound area was conducted using ArcGIS v10.0 including the 3D Analyst and Spatial Analyst extensions. The result is a series of maps presented in this report and a GIS-based model available for users to interact with the …

Mass Bays Resource Inventory: Summary And Findings From The Review Of Plans And Assessments, Urban Harbors Institute, University Of Massachusetts Boston

Urban Harbors Institute Publications

The Massachusetts Bays Program (MBP) contracted with the Urban Harbors Institute (UHI) of the University of Massachusetts Boston to conduct a review of papers, presentations, reports, and other relevant material produced from 1996 (the last CCMP) to present, that might inform the MBP’s update of their Comprehensive Conservation and Management Plan (CCMP). The review focused on five topics identified as priority topics by the MBP: water quality, invasive species, climate change/vulnerability, continuity of estuarine habitat, and estuarine habitat protection in the geographic region of the Mass Bays Program, particularly the 47 nearshore estuaries and embayments identified in the 2012 MBP …