Oceanography Commons^™

Characterizing Cdom Spectral Variability From Seas To Space, Brice Grunert

Dissertations, Master's Theses and Master's Reports

Colored dissolved organic matter (CDOM) absorption varies significantly across the global oceans, presumably due to differences in source and degradation pathways. Tracking this variability on a global, or even regional, scale requires broad temporal and spatial sampling at high frequency. Satellite remote sensing provides this platform; however, current and near future sensors are/will be limited to measurements within the UV and visible wavelengths (> 350 nm) while most optical proxies estimating CDOM composition, and relevant for understanding largescale biogeochemical processes, use wavelengths less than 350 nm. This dissertation examines global variability in CDOM spectral variability utilizing a variety of optical …

Conductivity, Temperature And Depth (Ctd) Data For Deepend Stations, Cruise Dp04, August 2016, David English, Chuanmin Hu, April Cook, Tracey Sutton

DEEPEND Datasets

Conductivity, temperature and depth data from the ship's CTD, which was deployed at each of the DEEPEND stations. Depth of cast was variable, but extended from near-surface waters to below the euphotic zone. This data was used in the assessment of the water column's vertical structure, and for comparison with physical models. Data were collected on cruise DP04 in August, 2016.

Testing The Underlying Chemical Principles Of The Biotic Ligand Model (Blm) To Marine Copper Systems: Measuring Copper Speciation Using Fluorescence Quenching, Tara N. Tait, James C. Mcgeer, Scott Smith

Chemistry Faculty Publications

Speciation of copper in marine systems strongly influences the ability of copper to cause toxicity. Natural organic matter (NOM) contains many binding sites which provides a protective effect on copper toxicity. The purpose of this study was to characterize copper binding with NOM using fluorescence quenching techniques. Fluorescence quenching of NOM with copper was performed on nine sea water samples. The resulting stability con- stants and binding capacities were consistent with literature values of marine NOM, show- ing strong binding with log K values from 7.64 to 10.2 and binding capacities ranging from 15 to 3110 nmole mg C ^{−1 …}

Distributions Of Krill And Antarctic Silverfish And Correlations With Environmental Variables In The Western Ross Sea, Antarctica, L. Brynn Davis, Eileen E. Hofmann, John M. Klinck, Andrea Piñones, Michael S. Dinniman

CCPO Publications

Antarctic krill Euphausia superba, crystal krill E. crystallorophias, and Antarctic silverfish Pleuragramma antarctica are key mid-trophic level species in the Ross Sea, connecting primary production to the upper trophic levels. Distributions of these species were constructed from observations made in the western Ross Sea from 1988 to 2004. Distributions of environmental conditions were obtained from a 5-km resolution circulation model (temperature, mixed layer depth, surface speed) and satellite-derived observations (chlorophyll, sea ice cover). A hierarchy of statistical methods determined correlations and relationships between species and environmental conditions. Each species occupies a localized habitat defined by different environmental characteristics. …

Cruise Data For Neuston Net And Paired Bongo Net Tows From 47 Stations In The Northern Gulf Of Mexico From R/V Pelican Cruise Lf2017a July 2017, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Shelf and slope waters in the Deep Water Horizon oil spill (DWHOS) area are known to serve as critical spawning, nursery, and foraging habitat of several important oceanic species including billfishes (e.g. blue marlin, white marlin, sailfish), tunas (bluefin tuna, yellowfin tuna), and other pelagic taxa (swordfish, dolphinfishes). The aim of this component was to further investigate potential ecological effects of the DWHOS on pelagic fishes during the early life period. Larval fishes were sampled from 48 stations in the northern Gulf of Mexico and cruise data was collected at each site including latitude/longitude, date, time and environmental data (sea …

Counting Crabs: Assessment Of Mangrove Crab Diversity And Density Among Three Sites In Ushongo, Tanzania, Clarasophia Gust

Independent Study Project (ISP) Collection

This study assessed the density and diversity of crabs across three mangrove forest zones in Ushongo, Tanzania. The aim was to understand variance in the composition and distribution of mangrove crabs in relation to mangrove tree composition gradients in the area. Sites were measured using a 200m line transect and 40-plot method. Data was also collected from a sand beach habitat to compare to the diversity and distribution of mangrove habitats. Diversity was analyzed using Simpson’s Index of Diversity and an ANOVA test on the average number of species found per plot in each site. Density was analyzed using an …

Bacteria Mitigation In Sponge Mariculture, Jambiani Zanzibar, Claire Johnston

Independent Study Project (ISP) Collection

The declining seaweed industry coupled with efforts by the NGO Marine Cultures have led to the establishment of sponge mariculture in Jambiani, Zanzibar. However, growing cyanobacteria levels have substantially increased sponge mortality rates. In order to determine successful cyanobacteria mitigation treatments, six populations of farm ropes, support lines, and sponges were (a) untreated, (b) manually cleaned or submerged in solutions of (c) 2% hydrogen peroxide, (d) 4% hydrogen peroxide, (e) 50 g/L salt, or (f) 70 g/L salt. No conclusions were drawn from rope treatments, no techniques were effective for support line treatments, and both concentrations of hydrogen peroxide were …

A Synergistic Approach For Evaluating Climate Model Output For Ecological Applications, Rachel D. Cavanagh, Eugene J. Murphy, Thomas J. Bracegirdle, John Turner, Cheryl A. Knowland, Stuart P. Corney, Walker O. Smith Jr., Claire M. Waluda, Nadine M. Johnston, Richard G. J. Bellerby, Eileen E. Hofmann

CCPO Publications

Increasing concern about the impacts of climate change on ecosystems is prompting ecologists and ecosystem managers to seek reliable projections of physical drivers of change. The use of global climate models in ecology is growing, although drawing ecologically meaningful conclusions can be problematic. The expertise required to access and interpret output from climate and earth system models is hampering progress in utilizing them most effectively to determine the wider implications of climate change. To address this issue, we present a joint approach between climate scientists and ecologists that explores key challenges and opportunities for progress. As an exemplar, our focus …

Vertical And Cross-Shore Distributions Of Barnacle Larvae In La Jolla, Ca Nearshore Waters: Implications For Larval Transport Processes, Malloree Lynn Hagerty

Theses

Many marine organisms begin their lives as tiny larvae that are at the mercy of ocean currents. Understanding the transport and subsequent dispersal of larvae is crucial, as it drives population connectivity in the ocean. Larval transport is a complex process involving both physical motions of the water and larval behavior. Vertical positioning is especially important because currents vary throughout the water column, and larvae at different depths will be advected differently. With swimming speeds insufficient to swim against currents, marine larvae can mediate cross-shore transport by controlling their depth distributions. Thus, the overall objective of this study was to …

Environmentally-Driven Variation In The Population Dynamics Of Gulf Menhaden (Brevoortia Patronus), Grant D. Adams

Master's Theses

Gulf Menhaden (Brevoortia patronus) is an abundant forage fish distributed throughout the Northern Gulf of Mexico (NGOM). Gulf Menhaden support the second largest fishery, by weight, in the United States and represent a key linkage between upper and lower trophic levels. Variation in the population dynamics can, therefore, pose consequences for the ecology and economy in the NGOM. Here we aim to understand variation in the individual and population dynamics of Gulf Menhaden throughout ontogeny and how such variation relates to environmental processes. We utilized a suite of fishery-dependent and –independent, remote sensing, modeled, and in situ data …

Synergistic Use Of Remote Sensing And Modeling To Assess An Anomalously High Chlorophyll-A Event During Summer 2015 In The South Central Red Sea, Wenzhao Li, Hesham El-Askary, K. P. Manikandan, Mohamed A. Qurban, Michael J. Garay, Olga V. Kalishnikova

Mathematics, Physics, and Computer Science Faculty Articles and Research

An anomalously high chlorophyll-a (Chl-a) event (>2 mg/m3) during June 2015 in the South Central Red Sea (17.5° to 22°N, 37° to 42°E) was observed using Moderate Resolution Imaging Spectroradiometer (MODIS) data from the Terra and Aqua satellite platforms. This differs from the low Chl-a values (<0.5 mg/m3) usually encountered over the same region during summertime. To assess this anomaly and possible causes, we used a wide range of oceanographical and meteorological datasets, including Chl-a concentrations, sea surface temperature (SST), sea surface height (SSH), mixed layer depth (MLD), ocean current velocity and aerosol optical depth (AOD) obtained from different sensors and models. Findings confirmed this anomalous behavior in the spatial domain using Hovmöller data analysis techniques, while a time series analysis addressed monthly and daily variability. Our analysis suggests that a combination of factors controlling nutrient supply contributed to the anomalous phytoplankton growth. These factors include horizontal transfer of upwelling water through eddy circulation and possible mineral fertilization from atmospheric dust deposition. Coral reefs might have provided extra nutrient supply, yet this is out of the scope of our analysis. We thought that dust deposition from a coastal dust jet event in late June, coinciding with the phytoplankton blooms in the area under investigation, might have also contributed as shown by our AOD findings. However, a lag cross correlation showed a two- month lag between strong dust outbreak and the high Chl-a anomaly. The high Chl-a concentration at the edge of the eddy emphasizes the importance of horizontal advection in fertilizing oligotrophic (nutrient poor) Red Sea waters.

Estimation Of Bubble-Mediated Air–Sea Gas Exchange From Concurrent Dms And Co2 Transfer Velocities At Intermediate–High Wind Speeds, Thomas G. Bell, Sebastian Landwehr, Scott D. Miller, Warren J. De Bruyn, Adrian H. Callaghan, Brian Scanlon, Brian Ward, Mingxi Yang, Eric S. Saltzman

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Simultaneous air–sea fluxes and concentration differences of dimethylsulfide (DMS) and carbon dioxide (CO2/ were measured during a summertime North Atlantic cruise in 2011. This data set reveals significant differences between the gas transfer velocities of these two gases (1kw/ over a range of wind speeds up to 21ms􀀀1. These differences occur at and above the approximate wind speed threshold when waves begin breaking. Whitecap fraction (a proxy for bubbles) was also measured and has a positive relationship with 1kw, consistent with enhanced bubble-mediated transfer of the less soluble CO2 relative to that of the more soluble DMS. However, the correlation …

Strategies For Environmental Education For Youths And Adults, Chumbe Island Coral Park, Zanzibar, Samantha Pfeffer

Independent Study Project (ISP) Collection

Chumbe Island Coral Park (CHICOP) is a privately-owned business that strives to follow the best principles of ecotourism, conservation, and environmental education. Their environmental education initiative is award-winning and has affected thousands of students and community members in Zanzibar. This study looked at the environmental education techniques that CHICOP already has in place by observing two pre-visits, three island-visits and one-post visit, and determined where there was a need for enhanced and new techniques for teaching about the environment. Evidence of climate change on Chumbe Island was also recorded to aid in the educational tools and to create a database …

Micro-Spi Sediment Profile Imaging Micro-Inspector, Andrew P. Corvin, Caleb T. Davies, Matt R. Ferrari

Mechanical Engineering

This project was proposed by Dr. Brian Paavo through a desire to more easily study the benthic sediment layers of the ocean. To do so, he asked us to build a simple and compact machine for use in sediment profile imagery (SPI). Although devices like this already exist, they are all large scale devices that require a ship with a crane to deploy, which is expensive and time consuming. Instead, he desired a “micro” SPI, which is capable of being deployed from a small vessel that can easily navigate shallow waters. Our interpretation of these requirements was as follows: a …

The Effect Of Watershed Runoff And Sediment Resuspension On Turbidity And Sediment Deposition In St. John, Us Virgin Islands: Implications For Watershed And Marine Development And Restoration In Bays With Coral Reefs, Stephen E. Campbell

Theses

In the US Virgin Islands (USVI), land-based (terrigenous) sedimentation has been identified as a major cause of coral stress. Development, such as the building of unpaved roads in steep coastal watersheds, has increased sediment yields and marine terrigenous sedimentation by up to an order of magnitude above background levels. When activated during storm events, ephemeral streams transport sediment from the watershed to coastal waters. Once deposited on the seafloor, resuspension of benthic sediments can further increase turbidity and deposition. However, isolating the relative contributions of runoff and resuspension to turbidity and deposition using conventional sediment trap monitoring has been challenging. …

Larval Rockfish Diversity Abundance Dynamics In Association With A Marine Protected Area In The Southern California Bight, Dustin Chen

Theses

Marine protected areas (MPAs) are areas aimed at protecting natural and cultural resources that are often proposed as a way to alleviate the effects of overfishing on populations of targeted species; these areas have varying degrees of fishing and recreational use restrictions. In order to assess MPA efficacy, it is important to determine the mechanisms by which the presence of MPAs affect reproductive output within and potentially even beyond their boundaries. I attempted to address this through studying the responses of rockfish (Sebastes spp.) larval abundances to the presence of the Cowcod Conservation Areas (CCAs) located within the Southern California …

Small-Scale Farming Of Sandfish (Holothuria Scabra) At Unguja Ukuu, Zanzibar, Claire Hacker

Independent Study Project (ISP) Collection

The biological and social components of sandfish farming were studied at Unguja Ukuu, Zanzibar. Measurement of temperature and depth, along with quadrat sampling of substrate and sea cucumbers, led to recommendations for future management of depth, biomass per area, disease and crabs, and substrate. Interviews revealed the role and potential benefits of sea cucumber farming for communities. Several barriers to, and complications with, the expansion of sea cucumber farming were also identified. This study provided information for improvement of this farm and hoped to spread knowledge of sandfish farming to Zanzibaris, who may benefit economically from the practice.

Tourism In Raja Ampat: New Chances And Challenges, Chloe King

Independent Study Project (ISP) Collection

This study focuses on the ways in which the tourism industry in Raja Ampat has contributed to local livelihoods and encouraged the preservation of marine resources, looking specifically at the case of a dive operator and a volunteer tourism operation. The study illuminates the challenges that these operators face when engaging with the local community to protect the environment, and recommends more effective strategies for improving relations between tourism operators and the communities in which they reside. The study ultimately makes the case that the legacy of colonial rule in Western Papua must be a consideration in tourism planning, as …

Cruise Data For Neuston Net And Paired Bongo Net Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2016a And Lf2016b, June-July 2016, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Shelf and slope waters in the Deep Water Horizon oil spill (DWHOS) area are known to serve as critical spawning, nursery, and foraging habitat of several important oceanic species including billfishes (e.g. blue marlin, white marlin, sailfish), tunas (bluefin tuna, yellowfin tuna), and other pelagic taxa (swordfish, dolphinfishes). The aim of this component was to further investigate potential ecological effects of the DWHOS on pelagic fishes during the early life period. Larval fishes were sampled from 48 stations in the northern Gulf of Mexico and cruise data was collected at each site including latitude/longitude, date, time and environmental data (sea …

Presence/Absence And Density Data For Epipelagic Tows From 48 Stations In The Northern Gulf Of Mexico From R/V Blazing Seven Cruises Lf2015a And Lf2015b June 2015 And July 2015, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Larval catch data after the oil spill is being used to improve our understanding of the causes of temporal variability as it relates to the Deep Water Horizon oil spill (DWHOS). Bongo and neuston net tows were conducted at 48 stations in both June and July, 2015 in the northern Gulf of Mexico. Cruise data collected at each site included latitude/longitude, date, time and environmental data (temperature, salinity, dissolved oxygen). The occurrence and density of selected epipelagic (e.g., billfishes, tunas, dolphinfishes, flyingfishes) and deep pelagic (e.g., lanternfishes, bristlemouths, marine hatchetfishes) fish larvae were quantified and are being used to extend …

Experimental Impacts Of Climate Warming And Ocean Carbonation On Eelgrass Zostera Marina, Richard C. Zimmerman, Victoria J. Hill, Malee Jinuntuya, Billur Celebi, David Ruble, Miranda Smith, Tiffany Cedeno, W. Mark Swingle

OES Faculty Publications

CO₂ is a critical and potentially limiting substrate for photosynthesis of both terrestrial and aquatic ecosystems. In addition to being a climate-warming greenhouse gas, increasing concentrations of CO₂ will dissolve in the oceans, eliciting both negative and positive responses among organisms in a process commonly known as ocean acidification. The dissolution of CO₂ into ocean surface waters, however, also increases its availability for photosynthesis, to which the highly successful, and ecologically important, seagrasses respond positively. Thus, the process might be more accurately characterized as ocean carbonation. This experiment demonstrated that CO₂ stimulation of primary production enhances …

Multiple Metabolisms Constrain The Anaerobic Nitrite Budget In The Eastern Tropical South Pacific, Andrew R. Babbin, Brian D. Peters, Calvin W. Mordy, Brittany Widner, Karen L. Casciotti, Bess B. Ward

OES Faculty Publications

The Eastern Tropical South Pacific is one of the three major oxygen deficient zones (ODZs) in the global ocean and is responsible for approximately one third of marine water column nitrogen loss. It is the best studied of the ODZs and, like the others, features a broad nitrite maximum across the low oxygen layer. How the microbial processes that produce and consume nitrite in anoxic waters interact to sustain this feature is unknown. Here we used ¹⁵N-tracer experiments to disentangle five of the biologically mediated processes that control the nitrite pool, including a high-resolution profile of nitrogen loss rates. …

Multiple Mating By Females In The Chesapeake Bay Blue Crab Callinectes Sapidus Population, S. Wells, J. Mcconaugha, L. Horth

OES Faculty Publications

Mature females of the Chesapeake Bay (USA) blue crab Callinectes sapidus population mate multiple times. Microsatellite DNA analysis of sperm stored in the spermathecae has shown that virtually all (~97%, 104 out of 107) females collected in a 2009−2010 study mated with at least 2 males. Enumeration of stored sperm revealed that despite multiple mating, some females did not have enough sperm to fulfill their lifetime reproductive potential, suggesting that female blue crabs may experience varying levels of sperm limitation. This could result from multiple factors. The average body size of males in the population has decreased, which reduces the …

A Six Thousand-Year Record Of Climate And Land-Use Change From Mediterranean Seagrass Mats, Lourdes Lopez-Merino, Nieves Colas-Ruiz, Maria Adame, Oscar Serrano, Antonio Cortizas, Miguel-Angel Mateo

Research outputs 2014 to 2021

The Mediterranean seagrass Posidonia oceanica maintains a biodiverse ecosystem and it is a world-wide important carbon sink. It grows for millennia, accumulating organic-rich soils (mats) beneath the meadows. This marine habitat is protected by the European Union; however, it is declining rapidly due to coastal development. Understanding its response to disturbances could inform habitat restoration, but many environmental impacts predate monitoring programs (years).
This research explores the palaeoecological potential of Posidonia mats to reconstruct six thousand years of environmental change that could have affected Posidonia meadows and, in turn, left an imprint on the mats.
Palynological, microcharcoal, magnetic susceptibility and …

Coral Bleaching And The Effect Of Disturbances On The Damselfish Community On Lizard Island, Australia, Alejandra Munoz

Independent Study Project (ISP) Collection

Coral reefs are characterized by their dynamic ecological processes that supports a high diversity through the recruitment of marine species and temporal disturbances that can have positive effects on the system. In the face of global climate change however, coral reefs face intense coral bleaching and increased degradation as they may begin to have less time to recover between bleaching events in the near future. Little is known on the long term effects of coral bleaching and habitat degradation on reef fish communities and much less is known about the mechanisms that bring about changes to reef fish assemblages.

This …

Ecological Connectivity Of Kimberley Marine Communities. Synthesis Report Of Project 1.1.3 Prepared For The Kimberley Marine Research Program, Zoe Richards, Oliver Berry, Jim Underwood, Kathryn Mcmahon, Mike Travers, Glenn Moore, Udhi Hernawan, Joseph Dibattista, Richard Evans, James Gilmour

Research outputs 2014 to 2021

The overarching objective of KMRP Project 1.1.3 (Ecological Connectivity of Kimberley Marine Communities) was to provide the first estimates of ecological connectivity across multiple spatial scales for a suite of model/priority marine organisms in the Kimberley. More specifically, this project aimed to provide species-specific estimates of realised connectivity at a reef-scale ( < 1 > km), inter-reef scale (1-100 km) and inter-region scale (100 + km) through genetic analyses of seven key animals and plants with contrasting dispersive life histories that are representative of common taxa.

Sea Surface Temperature Rises Shift Migration Patterns Due To Ecosystem Changes, Alexia Skrbic, Hesham El-Askary

Student Scholar Symposium Abstracts and Posters

The continuing climate change is negatively impacting ecosystems, specifically oceans which are declining and food webs are being altered by the increase of greenhouse gases. The increase of the carbon dioxide and other greenhouse gases is increasing sea surface temperature of the world’s oceans. Certain organisms lower on the food chain like phytoplankton and zooplankton are directly affected by the warming which alters how they process nutrients and their productivity. The limited amount of these primary producers in the oceans and specifically the location they inhabit directly affects all the organisms above them on the food chain. Several marine animals …

Modern Fair-Weather And Storm Sediment Transport Around Ship Island, Mississippi: Implications For Coastal Habitats And Restoration Efforts, Eve Rettew Eisemann

Master's Theses

The Mississippi – Alabama barrier island chain is experiencing accelerated sea level rise, decreased sediment supply, and frequent hurricane impacts. These three factors drive unprecedented rates of morphology change and ecosystem reduction. All islands in the chain have experienced land loss on the order of hectares per year since records began in the 1840s. In 1969, Hurricane Camille impacted as a Category 5, breaching Ship Island, and significantly reduced viable seagrass habitat. Hurricane Katrina impacted as a Category 3 in 2005, further widening Camille Cut. To better understand the sustainability of these important islands and the ecosystems they support, sediment …

Wrack Lines Fall/Winter 2016, Peg Vanpatten

Wrack Lines

This is the entire Fall/Winter 2016 issue of Wrack Lines magazine. Topics include fisheries, Atlantic sturgeon, resilient gardening, healthy ecosystems, salt marshes and salinity, and Rachel Carson's rising seas.

Coral Disease In Chumbe Island Coral Park: A Baseline Survey Of The Prevalence Of Coral Disease And Other Afflictions Within Chumbe Marine Protected Area, Hannah Turley

Independent Study Project (ISP) Collection

Coral mortality from disease and other afflictions is a rising concern for reefs around the world. The aim of this study was to provide to a baseline for the prevalence of coral disease and other afflictions, which indicate compromised coral health, in Chumbe Island Coral Park, Zanzibar, Tanzania. Chumbe's reef experienced a widespread bleaching event earlier this year and this baseline study will provide a starting point to see how the bleaching event affected the prevalence of disease and other afflictions within the reef. A baseline study will also allow the park to investigate if their current monitoring procedures are …