Oceanography Commons^™

Abcds Of Triggerfish In Pemba And Misali Island: Abundance, Biodiversity, Behaviour, Cultural Significance And Distribution, Hannah Ng Shueh Yi

Independent Study Project (ISP) Collection

This study takes a socioecological approach to understanding triggerfish (Balistidae) in Pemba Island, using Misali Island reefs as a sample ecological site. Two reef sites on Misali Island and three of four districts in Pemba were observed during the study. The abundance of Balistipus undulatus at one of two study sites is close to the maximum carrying capacity of the reef. Overall observed biodiversity was low. Behavioural trends point to distinct species specific defence strategies and species aggression taking different forms. Triggerfishes cultural significance was primarily as a food fish, though it is not highly sought after. With polarised responses …

Rocky Intertidal Community Structure Along An Upwelling Gradient Between Playa Venao And Nueva Gorgona On Panama’S Pacific Coast, Claire Brady

Independent Study Project (ISP) Collection

Ecological research on rocky intertidal ecosystems has increasingly focused on the regional oceanographic processes that shape community structure over functional group interactions. Intertidal communities’ dependence on onshore and offshore transport of intertidal species larvae, dissolved inorganic nutrients, and phytoplankton signal that upwelling and nearshore currents can have an influential role in determining the growth and composition of intertidal systems. The community structure of rocky intertidal areas was compared between two locations along an upwelling gradient in the Gulf of Panama: Nueva Gorgona, with intermittent seasonal upwelling, and Playa Venao, with fringe seasonal upwelling. The surface cover of algae, barnacles, and …

Sea Ice Formation, Glacial Melt And The Solubility Pump Boundary Conditions In The Ross Sea, Brice Loose, Sharon Stammerjohn, Peter Sedwick, Stephen Ackley

OES Faculty Publications

Seasonal formation of Dense Shelf Water (DSW) in the Ross Sea is a direct precursor to Antarctic Bottom Water, which fills the deep ocean with atmospheric gases in what composes the southern limb of the solubility pump. Measurements of seawater noble gas concentrations during katabatic wind events in two Ross Sea polynyas reveal the physical processes that determine the boundary value properties for DSW. This decomposition reveals 5–6 g kg⁻¹ of glacial meltwater in DSW and sea-ice production rates of up to 14 m yr⁻¹ within the Terra Nova Bay polynya. Despite winds upwards of 35 m s …

Laguncularia Racemosa Top-Layer Sediment Microorganism Makeup In Relation To Differing Levels Of Perceived Anthropogenic Impact In Bocas Del Drago, Bocas Del Toro, Panama, Gabrielle Glendening

Independent Study Project (ISP) Collection

As mangrove forests are destroyed by human factors across the earth, many crucial ecological processes that take place in these systems of trees are obstructed. One of the most important roles played by mangroves is their ability to sequester carbon in the sediment, as this storage of carbon helps diminish atmospheric warming. Many sediment microorganisms help in this process of carbon sequestration and play various other vital roles in mangrove ecosystems. Microorganisms in marine sediments can be used to assess the health of the surrounding environment. Past research has found significant differences in sediment microorganism composition, abundance, and diversity in …

Sea Level Rise Estimation On The Pacific Coast From Southern California To Vancouver Island, Xiaoxing He, Jean-Philippe Montillet, Rui Fernandes, Timothy I. Melbourne, Weiping Jiang, Zhengkai Huang

Geological Sciences Faculty Scholarship

Previous studies have estimated the sea level rise (SLR) at various locations on the west coast of the USA and Vancouver Island in Canada. Here, we construct an entire SLR profile from Vancouver Island in the Pacific Northwest to San Diego in Southern California. First, we process global navigation satellite system (GNSS) measurements at 405 stations blanketing the whole coast to generate a profile of vertical land motion (VLM) known to bias century-long tide gauge (TG) measurements recording relative SLR (RSLR). We are then able to estimate the absolute SLR (ASLR) by correcting the SLR with the VLM. Our study …

Supporting Dataset For Observed And Projected Global Warming Pressure On Coastal Hypoxia, Michael M. Whitney

Department of Marine Sciences

This archive contains the supporting dataset for the Biogeosciences article “Observed and projected global warming pressure on coastal hypoxia” by Michael M. Whitney. The main objective of the article is studying global patterns exacerbating coastal hypoxia by analyzing linear trends in SST, surface oxygen capacity (saturation concentration), and (vertical-minimum) oxygen concentration. Observations from a satellite-derived SST global climate dataset are analyzed to provide a context of coastal SST and oxygen-capacity trends observed over the last four decades. New analysis of 21st century projections from the Community Earth System Model (CESM) Large Ensemble Project is completed for coastal areas. Observed and …

Developing A Miniature Smart Boat For Marine Research, Michael Isaac Eirinberg

Computer Engineering

This project examines the development of a smart boat which could serve as a possible marine research apparatus. The smart boat consists of a miniature vessel containing a low-cost microcontroller to live stream a camera feed, GPS telemetry, and compass data through its own WiFi access point. The smart boat also has the potential for autonomous navigation. My project captivated the interest of several members of California Polytechnic State University, San Luis Obispo’s (Cal Poly SLO) Marine Science Department faculty, who proposed a variety of fascinating and valuable smart boat applications.

Murphy Scale: A Locational Equivalent Intensity Scale For Hazard Events, Yi Victor Wang, Antonia Sebastian

Institute for ECHO Articles and Research

Empirical cross-hazard analysis and prediction of disaster vulnerability, resilience, and risk requires a common metric of hazard strengths across hazard types. In this paper, the authors propose an equivalent intensity scale for cross-hazard evaluation of hazard strengths of events for entire durations at locations. The proposed scale is called the Murphy Scale, after Professor Colleen Murphy. A systematic review and typology of hazard strength metrics is presented to facilitate the delineation of the defining dimensions of the proposed scale. An empirical methodology is introduced to derive equivalent intensities of hazard events on a Murphy Scale. Using historical data on …

Assessing The Threat Of Coral Decline On Fish Diversity In Response To Temperature, Ryland Talmadge

Independent Study Project (ISP) Collection

Misali, a PECCA-protected island off the east coast of Pemba, Tanzania, is considered to be a marine biodiversity hotspot with a protected Non-Extractive Zone (NEZ) and remaining Extractive Zone (EZ). Upon protection, the island’s fringe reefs faced severe coral bleaching during the 1998 bleaching event, estimated to kill up to 70% of corals. Since the event, several others have occurred in addition to restructuring the management plan in 2006 to expand the region to 1000km. While the damage from the most recent coral bleaching event in 2020 has yet to be surveyed, this study investigates the current reef health in …

The Relationship Between Substrate Composition, Community Structure And Feeding Preferences Of Parrot Fishes (Scaridae) In Anmardub, Guna Yala Coastal Reefs, Caitlin Amman

Independent Study Project (ISP) Collection

Coral reefs are important marine ecosystems, as they support biodiversity and generate buffer zones, yet their abundance is incredibly limited globally. One of the main threats that coral reefs face is excessive macroalgal coverage, which limits sunlight from reaching corals, and thus, limits the energy that can reach them. Parrot fish (Scaridae) are keystone herbivores, as they consume macroalgae growing on corals, which aids in reef survivability. While there is previous research on the abundances, sizes, and feeding habits of Scaridae species in the Caribbean, there is no published research on how community structure and feeding preferences of parrot fishes …

Connecticut Embayment Characteristics 2022, Jamie M.P. Vaudrey, James E. O'Donnell

Department of Marine Sciences

Data on Connecticut embayment characteristics. This Excel file is the centerpiece for capturing embayment characteristics as presented in RESPEC (2022), developed specifically for this project. Some parameters such as watershed size, embayment size, and tidal range were pulled from other sources described in Appendix A of RESPEC (2022), but much of the data and indicators in the Excel file were developed for this project. Each parameter included in the spreadsheet is fully defined in Appendix A of RESPEC (2022). All data available in the spreadsheet are provided by embayment in Appendix C of RESPEC (2022), including the results of bathymetric …

A General Pattern Of Trade-Offs Between Ecosystem Resistance And Resilience To Tropical Cyclones, Christopher J. Patrick, John S. Kominoski, William H. Mcdowell, Benjamin Branoff, David Lagomasino, Miguel Leon, Enie Hensel, Marc J. S. Hensel, Bradley A. Strickland, T. Mitchell Aide, Anna Armitage, Marconi Campos-Cerqueira, Victoria M. Congdon, Todd A. Crowl, Donna J. Devlin, Sarah Douglas, Brad E. Erisman, Rusty A. Feagin, Simon J. Geist, Nathan S. Hall, Amber K. Hardison, Michael R. Heithaus, J. Aaron Hogan, J. Derek Hogan, Sean Kinard, Jeremy J. Kiszka, Teng-Chiu Lin, Kaijun Lu, Christopher J. Madden, Paul A. Montagna, Christine S. O'Connell, C. Edward Proffitt, Brandi Kiel Reese, Joseph W. Reustle, Kelly L. Robinson, Scott A. Rush, Rolando O. Santos, Astrid Schnetzer, Delbert L. Smee, Rachel S. Smith, Gregory Starr, Beth A. Stauffer, Lily M. Walker, Carolyn A. Weaver, Michael S. Wetz, Elizabeth R. Whitman, Sara S. Wilson, Jianhong Xue, Xiaoming Zou

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Tropical cyclones drive coastal ecosystem dynamics, and their frequency, intensity, and spatial distribution are predicted to shift with climate change. Patterns of resistance and resilience were synthesized for 4138 ecosystem time series from n = 26 storms occurring between 1985 and 2018 in the Northern Hemisphere to predict how coastal ecosystems will respond to future disturbance regimes. Data were grouped by ecosystems (fresh water, salt water, terrestrial, and wetland) and response categories (biogeochemistry, hydrography, mobile biota, sedentary fauna, and vascular plants). We observed a repeated pattern of trade-offs between resistance and resilience across analyses. These patterns are likely the outcomes …

Supporting Dataset For Observed And Forecasted Global Warming Pressure On Coastal Hypoxia, Michael M. Whitney

Department of Marine Sciences

This archive contains the supporting dataset for the Biogeosciences manuscript “Observed and forecasted global warming pressure on coastal hypoxia” by Michael M. Whitney. The main objective of the manuscript is studying global patterns exacerbating coastal hypoxia by analyzing linear trends in SST, surface oxygen capacity, and (vertical-minimum) oxygen concentration. Observations from a satellite-derived SST global climate data are analyzed to provide context for coastal SST and oxygen-capacity trends over the last four decades. New analysis of 21st century forecasts from the Community Earth System Model (CESM) Large Ensemble Project is completed for coastal areas. Observed and forecasted coastal SST and …

An Evaluation Of The Organic Carbon Content Found In Fucus Vesiculosus And Ascophyllum Nodosum From Skutulsfjörður And Eyjafjörður, Iceland, Sylvie Alexander

Independent Study Project (ISP) Collection

In response to global warming and changing climate, carbon sequestration through macroalgal cultivation has emerged as a possible climate change mitigation technique. Macroalgal cultivation’s relationship to carbon sequestration however is still not well understood. It is imperative to understand macroalgae’s connection to carbon sequestration to evaluate if macroalgal cultivation can help combat climate change. There is a gap in literature regarding the carbon content of Icelandic macroalgae and therefore the contribution of Icelandic macroalgae to national and global carbon sequestration estimates. This paper aims to address this knowledge gap by evaluating organic carbon content of Fucus vesiculosus and Ascophyllum nodosum …

An Eventful Past Predicting A Bizarre Future: Assessing The Influence Of Ocean Circulation On Key Fish Species In Icelandic Waters. An Analysis Of Past Circulation Records In Order To Predict The State Of Demersal Fish Stocks In Future Climate Scenarios, Matthew Engfer

Independent Study Project (ISP) Collection

Feedback-driven changes in North Atlantic Ocean circulation are affecting marine ecosystems off the coast of Iceland and are predicted to have differing outcomes by 2100. In this study, data reflecting Icelandic fish stock distributions was compiled on a map with oceanographic temperature and depth in order to observe patterns of population changes with changes in ocean currents. After evaluating past temperature effects on demersal fish stocks, future habitat predictions were estimated in weaker ocean circulation scenarios. A number of assumptions were made in order to pinpoint a correlation between ocean temperature and fish habitat. Iceland’s unique location and climate offers …

Taxonomic Annotation Of Near-Coral Seawater Microbiota In Kilifi, Kenya, Megan Ruoff

Independent Study Project (ISP) Collection

The general objective of this study was to analyze the microbiome of seawater above a coral reef in Kilifi, Kenya. Specific objectives included establishing a baseline microbiota profile, classifying the identified organisms at various taxonomic levels, and conjecturing about reef health from the presence or absence of bioindicator species including Vibrio bacteria. Sequenced 16S rRNA gene sequences from seawater samples at Kuruwitu Conservancy in Kilifi, Kenya were taxonomically classified by exact matching employing the Dada2 software package and the naïve Bayesian classifier method with 97% similarity cut off. The seawater microbiota contained mostly Proteobacteria (73.28%), followed by Bacteroidetes (14.08%) and …

An Assessment Of Terrestrial Decapoda Diversity Across Three Ecological Zones In Mida Creek, Kenya, Reese Yount

Independent Study Project (ISP) Collection

Mangroves make up one of the most effective natural remedies at combating climate change today. They represent great commercial interest worldwide and yet, are being degraded at an unsustainable rate. If successful mangrove conservation plans are to be implemented for our posterity, mangrove ecosystems need to be better understood at the community level. Mangrove crabs make up the most diverse and populace mangrove inhabitants. They are classified as ecosystem engineers and their potential for being used as bioindicators makes them integral to assessing mangrove health. Yet, their diversity and distribution patterns are not well understood. The aim of this study …

Variation In Coral Thermotolerance Across A Pollution Gradient Erodes As Coral Symbionts Shift To More Heat-Tolerant Genera, Melissa S. Naugle, Thomas A. Oliver, Daniel J. Barshis, Ruth D. Gates, Cheryl A. Logan

Biological Sciences Faculty Publications

Phenotypic plasticity is one mechanism whereby species may cope with stressful environmental changes associated with climate change. Reef building corals present a good model for studying phenotypic plasticity because they have experienced rapid climate-driven declines in recent decades (within a single generation of many corals), often with differential survival among individuals during heat stress. Underlying differences in thermotolerance may be driven by differences in baseline levels of environmental stress, including pollution stress. To examine this possibility, acute heat stress experiments were conducted on Acropora hyacinthus from 10 sites around Tutuila, American Samoa with differing nutrient pollution impact. A threshold-based heat …

Water Quality Assessment In The Occurrence Of Acanthaster Spp. (Crown-Of-Thorns Starfish, Cots) On Coral Reefs In Menjangan Island, Bali, Indonesia, Novia Arinda Pradisty, Eghbert Elvan Ampou, Rizki Hanintyo

Makara Journal of Science

Aquatic stressors are known to cause biological impairment that can result in biodiversity loss in several Marine Protected Areas (MPA), including in Menjangan Island, West Bali National Park. The objectives of this study were to correlate the changes in water quality parameters with the biological effect of Crown-of-Thorns starfish (CoTS) population dynamics and to assess the most applicable parameters for continuous environmental monitoring. Field observations and surveys were conducted three times in 2017, during the wet season, dry season and season transition, in order to assess the effect of seasonal variability. Redundancy Analysis (RDA) was performed to determine the relationship …

The Source Detection Of 28 September 2018 Sulawesi Tsunami By Using Ionospheric Gnss Total Electron Content Disturbance, Jann-Yenq Liu, Chi-Yen Lin, Yuh-Ing Chen, Tso-Ren Wu, Meng-Ju Chung, Tien-Chi Liu, Yu-Lin Tsai, Loren C. Chang, Chi-Kuang Chao, Dimitar Ouzounov, Katsumi Hattori

Mathematics, Physics, and Computer Science Faculty Articles and Research

The 28 September 2018 magnitude Mw7.8 Palu, Indonesia earthquake (0.178° S, 119.840° E, depth 13 km) occurred at 10:02 UTC. The major earthquake triggered catastrophic liquefaction, landslides, and a near-field tsunami. The ionospheric total electron content (TEC) derived from records of 5 ground-based global navigation satellite system (GNSS) receivers is employed to detect tsunami traveling ionospheric disturbances (TTIDs). In total, 15 TTIDs have been detected. The ray-tracing and beamforming techniques are then used to find the TTID source location. The bootstrap method is applied in order to further explore the possible location of the tsunami source based on results of …

Algal Coverage Detection And Classification Using Envi: Correlation With Dissolved Oxygen Levels In Elkhorn Slough, Ca, Jason Dawson

All HCAS Student Capstones, Theses, and Dissertations

Estuaries are exposed to varying stressors, whether they be physical, chemical, or environmental. The most notable of stressors is eutrophication of coastal and inland ecosystems. This is a result of increased supply of nutrients fueling production within the system. One outcome of this increased nutrient load to the system is that of algal blooms. These blooms can impact the aesthetic appearance and degrade the quality of health of the system. Many of these coastal zones and waterways are critical habitats for many biological (some endangered) species and serve as recreational areas for human populations. Elkhorn Slough, California is one of …

Long-Term Ndvi And Recent Vegetation Cover Profiles Of Major Offshore Island Nesting Sites Of Sea Turtles In Saudi Waters Of The Northern Arabian Gulf, Rommel H. Maneja, Jeffrey D. Miller, Wenzhao Li, Hesham El-Askary, Ace Vincent B. Flandez, Joshua J. Dagoy, Joselito Francis A. Alcaria, Abdullajid U. Basali, Khaled A. Al-Abdulkader, Ronald A. Loughland, Mohamed A. Qurban

Mathematics, Physics, and Computer Science Faculty Articles and Research

Vegetation is an important ecological component of offshore islands in the Arabian Gulf (AG), which maintains long-term resilience of these islands. This is achieved by influencing sediment retention and moisture acquisition via condensation during periods of high humidity and by providing a variety of microhabitats for island fauna. The resilience of offshore islands’ ecosystems in the Saudi waters is important because they host the largest number of nesting hawksbill and green turtles in the AG. This study defines the characteristics and the long-term trends in vegetation cover of the offshore islands used by sea turtles as nesting grounds in the …

Synergistic Use Of Remote Sensing And Modeling For Estimating Net Primary Productivity In The Red Sea With Vgpm, Eppley-Vgpm, And Cbpm Models Intercomparison, Wenzhao Li, Surya Prakash Tiwari, Hesham El-Askary, Mohamed Ali Qurban, Vassilis Amiridis, K. P. Manikandan, Michael J. Garay, Olga V. Kalashnikova, Thomas C. Piechota, Daniele C. Struppa

Mathematics, Physics, and Computer Science Faculty Articles and Research

Primary productivity (PP) has been recently investigated using remote sensing-based models over quite limited geographical areas of the Red Sea. This work sheds light on how phytoplankton and primary production would react to the effects of global warming in the extreme environment of the Red Sea and, hence, illuminates how similar regions may behave in the context of climate variability. study focuses on using satellite observations to conduct an intercomparison of three net primary production (NPP) models--the vertically generalized production model (VGPM), the Eppley-VGPM, and the carbon-based production model (CbPM)--produced over the Red Sea domain for the 1998-2018 time period. …

Surviving Under The Reign Of El Niño Southern Oscillation: An Analysis Of The Effects Of Extreme El Niño Events On The Oceanographic And Biological Environment Of The Galápagos Islands, Ava Mcilvaine

Independent Study Project (ISP) Collection

El Niño Southern Oscillation (ENSO) is commonly known as the atmospheric and oceanographic powerhouse of the Southern Pacific Ocean. From phytoplankton to apex predators, ENSO controls the stability of species’ populations within this biodiverse ocean environment. El Niño’s 9-15 month alteration of the heat storage in the tropical Pacific drastically shifts the temperature, nutrient, and circulation gradient its marine life is accustomed to. A single degree change in the ocean’s surface layer temperature can have large consequences for marine species, and El Niño is commonly associated with Sea Surface Temperature Anomalies (SSTAs) between 2°- 6° Celsius. The potential danger El …

Innovative Protection And Conservation Of Coral Reefs In Madagascar, Meghan Parker

Independent Study Project (ISP) Collection

Madagascar is home to approximately 3,450 kilometers of coral reefs, including some of the most biodiverse and valuable marine ecosystems in the Indian Ocean (Webster 2002). This online research project investigates the status of Madagascar’s coral reefs separated by region, threats that are facing the reefs and community-based solutions to protect and conserve the reefs. Conclusions of this online research suggest that most coral reefs in Madagascar are in relatively good health, although looming threats exist from overfishing, increased coastal populations, tourism, and warming waters. Community-based solutions are abundant and have proven effective, and can be implemented nation-wide, personalized to …

Changes In Atmospheric, Meteorological, And Ocean Parameters Associated With The 12 January 2020 Taal Volcanic Eruption, Feng Jing, Akshansa Chauhan, Ramesh P. Singh, Prasanjit Dash

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The Taal volcano erupted on 12 January 2020, the first time since 1977. About 35 mild earthquakes (magnitude greater than 4.0) were observed on 12 January 2020 induced from the eruption. In the present paper, we analyzed optical properties of volcanic aerosols, volcanic gas emission, ocean parameters using multi-satellite sensors, namely, MODIS (Moderate Resolution Imaging Spectroradiometer), AIRS (Atmospheric Infrared Sounder), OMI (Ozone Monitoring Instrument), TROPOMI (TROPOspheric Monitoring Instrument) and ground observations, namely, Argo, and AERONET (AErosol RObotic NETwork) data. Our detailed analysis shows pronounced changes in all the parameters, which mainly occurred in the western and south-western regions because the …

Assessment Of Soil Protein And Refractory Soil Organic Matter Across Two Chronosequences Of Newly Developing Marshes In Coastal Louisiana, Usa, Stuart Alexander Mcclellan

LSU Doctoral Dissertations

The impacts of sea-level rise and hydrologic manipulation are threatening the stability of coastal marshes throughout the world, thereby increasing the potential for re-mineralization of soil organic matter (SOM) in these systems. Such threats have prompted marsh restoration efforts, particularly in coastal Louisiana, yet it is unclear how the slowly decomposing (refractory) and quickly decomposing (labile) fractions of SOM may be differentially affected by different approaches to marsh restoration. Additionally, otherwise labile compounds may accumulate in the soil via a range of protective mechanisms, including rapid burial and association with organic compounds that are thought to enhance soil aggregation, such …

On The Frontlines - The Fishermen Of Ibrahim Hyderi, Muhammad Haris Aslam Khan

MSJ Capstone Projects

Climate change has become a matter of recent debate for much of the world. According to a report published by a German watch, a non-governmental organization, in 2019, Pakistan among the five countries at severe risk of climate change disasters.

During the last two decades, Pakistan saw more than 141 extreme climatic catastrophes. Only in 2016, more than 566 people died due to these conditions.

A report published by Asian Development Bank in 2017 indicates Pakistan’s climate change profile. It states that more than 1,600 people have lost their lives in the super flood of 2010 alone. A loss of …

36 Years After The Species' Mass-Mortality: Diadema Antillarum Test Sizes, Population Densities, And Substrate Preferences In Three Guna Yala Reefs Near Wichub Wala Island, Bimini Horstmann

Independent Study Project (ISP) Collection

In January 1983, a waterborne pathogen beginning near the Atlantic Panama Canal entrance caused history's largest recorded marine animal die-off, wiping out 95-99% of Diadema antillarum populations throughout the Caribbean. D. antillarum, the long-spined sea urchin, is a keystone herbivore in coral reefs and its decreased densities have caused many reefs to suffer macroalgal phase shifts. Modest recovery of this species has been documented in some Caribbean locations, but reefs in Guna Yala, Panama continued to experience population decline. This study investigates density, test size, and substrate preferences of D. antillarum in three shallow coral reef areas to update the …

Coastal Stream Salinity And Its Impacts On Pemba Agriculture, Sara Mccormack

Independent Study Project (ISP) Collection

The extent of saltwater inundation of coastal streams was assessed on Pemba Island near agricultural areas in northeastern and northwestern regions of the island. Conductivity and pH were measured from water samples collected at various distances along the stream to determine the extent of salinity at different points in the tidal cycle. This salinity data, as well as the context of recent weather events, runoff, and geological characteristics of the region were used to determine the primary factors that influence changes in surface water salinity. The primary factor that influences surface water salinity was determined to be changes in stream …