Fresh Water Studies Commons^™

A Probabilistic Deep Learning Framework For Retrieving Chlorophyll-A From Hyperspectral Imagery: Integrating Channel Attention And Mixture Density Networks, Wenzhao Li, Surendra Maharjan, Rejoice Thomas, Junde Chen, Hesham Morgan, Michael J. Garay, Olga V. Kalashnikova, Shahryar Fazli, Charles Ichoku, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Accurate monitoring of Chlorophyll-a (Chla) is critical for assessing aquatic ecosystem health, yet ecological complexity often leads to ambiguous spectral signatures in satellite data. Traditional deterministic models assume a one-to-one mapping between spectra and pigments, often failing to capture these high-dimensional analytical challenges. In this study, we propose a novel deep learning architecture, the Channel Attention-Mixture Density Network (CA-MDN), to retrieve Chla from the National Aeronautics and Space Administration (NASA) Earth Surface Mineral Dust Source Investigation (EMIT) hyperspectral mission. The CA-MDN integrates an attention mechanism to dynamically select ecologically relevant spectral bands and employs a probabilistic output layer to quantify …

A Robust Deep Learning Ensemble Framework For Waterbody Detection Using High-Resolution X-Band Sar Under Data-Constrained Conditions, Soyeon Choi, Seung Hee Kim, Son V. Nghiem, Menas Kafatos, Minha Choi, Jinsoo Kim, Yangwon Lee

Institute for ECHO Articles and Research

Accurate delineation of inland waterbodies is critical for applications such as hydrological monitoring, disaster response preparedness and response, and environmental management. While optical satellite imagery is hindered by cloud cover or low-light conditions, Synthetic Aperture Radar (SAR) provides consistent surface observations regardless of weather or illumination. This study introduces a deep learning-based ensemble framework for precise inland waterbody detection using high-resolution X-band Capella SAR imagery. To improve the discrimination of water from spectrally similar non-water surfaces (e.g., roads and urban structures), an 8-channel input configuration was developed by incorporating auxiliary geospatial features such as height above nearest drainage (HAND), slope, …

Synthesis Study Of Evapotranspiration Evolution In The Mekong Delta Induced By Land Use And Land Cover Changes In The Decades Of 1990–2020, Emiliana Valentini, Serena Sapio, Son V. Nghiem, Seung Hee Kim, Sara Liburdi, Andrea Taramelli

Institute for ECHO Articles and Research

Evapotranspiration (ET) plays a key role in the water cycle and balance, and its estimation is of paramount importance in hydrological studies. This variable is also strongly influenced by the land use and land cover (LULC). This study use a synthesis approach to analyse the relationship between ET variation and LULC transformation in the period 1990–2020. The study area represents a major agricultural region in the Mekong Delta of Vietnam between the Mekong and Bassac rivers. The multivariate dataset was ingested into the hydrological model Soil and Water Assessment Tool to examine the multidecadal ET evolution across the study region. …

Captive Model Test For Hydrodynamic Derivatives Of Ship Maneuvering In Regular Head Waves, Pin-Yuan Huang, Zih-Yao Lin, Tsung-Yueh Lin, Fu-En Lee, Yan-Wei Lai

Journal of Marine Science and Technology–Taiwan

The motion of ship in wave can be discussed in seakeeping and maneuvering. In model tests, the former is found by the motion response of waves while the latter requires captive model test to acquire hydrodynamic derivatives. The hydrodynamic derivatives in waves are discovered to be different from those in calm water. To understand better the behavior of maneuverability in waves, maneuvering tests in a wide range of waves are performed in this study. This study presents an experimental investigation into the maneuvering behavior of a container ship in regular waves, covering a wide range of wavelengths from half to …

A Comprehensive Statistical And Regional Analysis Of Lng-Powered Marine Vessels On Ghg Mitigation Strategies Considering Existing Bunkering Stations And Gwp Values, Canberk Hazar, Onur Yuksel, Murat Bayraktar

Journal of Marine Science and Technology–Taiwan

This study aims to quantify and analyse emissions from marine vessels that can operate on liquefied natural gas (LNG) but continue to use conventional fuels, largely due to the limited availability of LNG bunkering stations (BSs) over long distances. Four regions have been identified as having high concentrations of LNG-fueled vessels but limited access to operational BSs: the West Coast of the United States of America (USA), South Africa–Good Hope–Madagascar, Northwest Africa, and Brazil. This selection is based on the geographical distribution of these ships and the existing infrastructure. Hourly greenhouse gas (GHG) emissions have been calculated by considering the …

Electronic Bills Of Lading And Blockchain Technology: A Regulatory Perspective, Hsin-Hua Tsai

Journal of Marine Science and Technology–Taiwan

Information and communications technology (ICT) systems are increasingly relevant to the maritime sector. Regarding the revolution of the bill of lading, many shipping lines and other technology startups have been looking into developing viable electronic transport documents that have the same functions as paper bills of lading to reduce supply chain risks. The limitations of the paper-based process have become increasingly visible in the COVID-19 crisis. The main purpose of the article is to analyze the application of blockchain bills of lading, which utilizes computational logic to create the digital ledger, and users can set up algorithms and rules to …

Intelligent Formation Control Using Orfbls And Adaptive Backstepping Sliding-Mode Control To Address Uncertain Tilting In Multi-Quadrotors During Wind Gusts, Ching-Chih Tsai, Chun-Fu Mao, Kumail Hussain

Journal of Marine Science and Technology–Taiwan

In terms of aerial robotics, stable and precise formation control is a significant challenge for tilting multi-quadrotors during disturbances. This paper proposes a fixed-time formation control strategy for tilting multi-quadrotors to address the effect of external wind gusts. The observer accurately predicts environmental disturbances and an adaptive backstepping sliding-mode control (ABSMC) method with an output recurrent fuzzy broad learning system (ORFBLS) addresses these disturbances within a finite time. ORFBLS dynamically adjusts its structure through a growing ORFBLS structure to allow nodes to be added as needed. The method's stability is validated using Lyapunov stability theory and ensures the convergence of …

Visually Guided Landing System On Ship Deck For Multicopter, Dong-Lin Li, Shih-Kai Lee, Tzu-Hsiang Chou

Journal of Marine Science and Technology–Taiwan

Traditionally, high-value fish have been located at sea using helicopters. However, with advancements in technology, maritime drones have become increasingly important in recent years. Compared to traditional helicopter-based methods, drones offer significantly lower operational costs, making them cost-effective. However, the challenging sea conditions, including strong winds and the swaying motion of vessels, pose significant challenges for drone landings.

This paper proposes a stable approach for multicopter landing on ships at sea, incorporating improved marker detection, enhanced wind resistance control, and more accurate deck motion prediction. In the marker detection phase, we introduce a method to improve the accuracy of ArUco …

Hydrodynamic Tipping Points In The Mississippi Sound In Response To Bonnet Carré Spillway Openings, Mustafa Kemal Cambazoglu, Brandy N. Armstrong, Mohsena Lopa, Marc Diard, Jerry D. Wiggert

Faculty Publications

This project examines the current operational strategy of the Bonnet Carré Spillway (BCS), a Mississippi River flood-control structure located about 21 miles northwest of New Orleans, Louisiana, and managed by the U.S. Army Corps of Engineers. The BCS is part of the larger Mississippi River and Tributaries Project, a network of levees and control structures designed to minimize flooding from the American plains to southern Louisiana. The spillway is opened when river discharge at New Orleans is forecasted to exceed 1,250,000 cubic feet per second, diverting significant volumes of Mississippi River water into Lake Pontchartrain which subsequently flows into Mississippi …

Typology And Spatiotemporal Patterns Of Illegal Fishing Activities In The Philippines: Implications For Fisheries Management, Marlowe O. Acevedo, Tzu-Yun Ching, Chih-Shin Chen

Journal of Marine Science and Technology–Taiwan

Illegal, unreported, and unregulated (IUU) fishing activity is a global threat and continues to undermine the effectiveness of fisheries regulations and management measures. However, the extent of illegal fishing in Philippine waters remains unclear. This study aims to identify the types of illegal fishing in Philippine waters and analyzed their temporal and spatial patterns. Data were obtained from the records of the Philippine Coast Guards (PCG) and Maritime Law Enforcement Agencies from 2015 to 2020. A total of 602 apprehensions were recorded, resulting in 813 violations, of which 630 cases were fishery violations. Most of the watercrafts involved in the …

Environmental Monitoring In Shallow Lakes: Public Health Threats In Urban Waters, Kyleigh E. Johnson

Theses and Dissertations

Lakes are an integral part of urban and suburban communities, providing ecological, recreational, and public health benefits. Many of these lakes are located in densely populated areas and are subject to urban influences on water quality. Algal toxins and Escherichia coli are two common recreational concerns. Algal toxins come from harmful algal blooms that are influenced by nutrient availability and temperature, while bacteria are often introduced through run-off and animal waste. Sampling every 3-4 weeks from May-October 2025 allowed for the assessment of seasonal patterns and site-specific differences across nine lakes in the Richmond area. The highest bacterial concentrations appeared …

Assessment Of Soybean Response To Irrigation Variability In Eastern Nebraska Using The Aquacrop Model, Anmol Singh, Saleh Taghvaeian, Yufeng Ge, Derek M. Heeren, Frank Bai

Department of Agricultural and Biological Systems Engineering: Faculty Publications

Soybean [Glycine max (L.) Merr.] is a major irrigated crop in eastern Nebraska, where recent expansions in irrigated agriculture and projected trends in irrigation demand necessitate thorough investigations of approaches that can optimize its irrigation management. In this study, the AquaCrop model was calibrated and validated using 19 variable irrigation treatments from a five-year field experiment. The model accurately simulated canopy cover, soil water content, and grain yield, with validation normalized root mean square error (nRMSE) of 12%, 7%, and 7%, respectively. The model was subsequently applied to estimate soybean yield and water requirement during a 15-year period (2010–2024) …

A Quantitative Analysis Of Burrowing And Subterranean Locomotion In The Sand Lance Using A Transparent Sediment, Issei Fujita, Makoto Tomiyasu, Jun Yamamoto, Yasuzumi Fujimori

Journal of Marine Science and Technology–Taiwan

Sand lances (Ammodytes spp.) rely on rapid burrowing into sediment for predator avoidance. Although their sediment grain-size preferences are well documented, the biomechanics underlying burrowing success remain unclear because natural substrates are opaque. Using a transparent-sediment system, we directly visualized and quantified burrowing kinematics to: (1) test the effect of body size (total length, TL) on burrowing success; (2) examine entry mechanisms (e.g., swimming speed, entry angle); and (3) describe locomotion within sediment. Logistic regression on the full dataset (N = 28 fish) identified TL as the primary determinant of success, with larger individuals exhibiting significantly higher success …

Cruise Network Design Under Sequential Duopolistic Entry, Ta-Hui Yang, Ching-Hui Tang, Wan-Tien O

Journal of Marine Science and Technology–Taiwan

This study addresses the network design for international cruise services in a duopolistic market, where carriers enter and make decisions sequentially. The leader, who makes the first move, makes decisions as there is no competitor in the market. The follower, who makes decisions later, has to design their network considering the existing leader’s network. The leader’s model is a mixed integer linear problem while the follower’s model is a mixed integer nonlinear problem. Therefore, a heuristic is proposed to solve the problem. The commercially available general algebraic modeling system is used in conjunction with its different solvers to solve the …

Effect Of Heat Treatment On The Corrosion And Wear Behavior Of 17-4 Ph Stainless Steel For Marine Applications, Syuan Tai, I-Kon Lee, Ming-Yuan Lin, Kang-Yu Liao, Chin-Chun Chang, Hung-Bin Lee

Journal of Marine Science and Technology–Taiwan

This study explores the tribocorrosion behavior of conventionally cast 17-4 PH stainless steel under real seawater conditions, focusing on the effects of three heat treatments (Solution, H900, H1100). Electrochemical tests, tribocorrosion experiments, SEM, XPS, and quantitative analysis were used to establish a three-stage tribocorrosion mechanism. Results show that H900 exhibits superior corrosion and wear resistance, while H1100 suffers increased material loss and surface cracking at high potentials. Elemental analysis revealed NbC migration forming third-body particles, which, although briefly reducing friction, induced local stress concentration and crack initiation. The findings highlight the critical influence of microstructure, passive film stability, and third-body …

Enhancing Underwater Imagery And Organism Detection Using Reinforcement Learning, K. Arul Deepa, P. Ramya, Karpaga Vinodha, Dharmaraja C

Journal of Marine Science and Technology–Taiwan

Underwater environments pose significant challenges in assessing image quality and organism detection due to light scattering and absorption, which limits visibility and color fidelity. Existing solutions often fail to effectively address these challenges, resulting in suboptimal image quality and hindering organism identification. This paper examines the problem through a dual-focused approach: enhancing underwater images and detecting organisms using the Underwater Image Enhancement Benchmark (UIEB) dataset. The first step introduces a state-of-the-art method for image enhancement by applying reinforcement learning (RL) principles. By formulating the enhancement process as a Markov Decision Process (MDP)—where states are represented by image features and actions …

Investigation Of Mercury Bioaccessibility In Subsistence Fishes From The Canadian Subarctic, Kiran Mateo Sharma Mr

Theses and Dissertations (Comprehensive)

Fish consumption is the primary pathway for human exposure to methylmercury (MeHg), a global contaminant of concern known to cause adverse health effects. Fort Albany First Nation, a remote Indigenous community in northern Ontario that relies on fish for both subsistence and cultural practices, has expressed concern regarding the safety of local fish consumption. Community members and leaders have communicated several priorities for scientific research that are the foundation of this thesis. Specifically, consumers of wild-caught fish have asked how traditional cooking methods may affect mercury concentrations in fish, and how mercury concentrations in little-studied organs, such as liver and …

Aquatic Invasive Species Survey And Treatment On Lake Umatilla And Lake Celilo 2024-2025 Report, Jacob Rose, Gabriel E. Campbell

Center for Lakes and Reservoirs Publications and Presentations

Flowering Rush (Butomus umbellatus) is an invasive aquatic plant in the Pacific Northwest that threatens salmon habitat. The Center for Lakes and Reservoirs staff surveyed for this and other aquatic species from 2024 and 2025 in the Columbia River in Lake Umatilla and Lake Celilo. This document summarizes their survey efforts including their protocols, data, and small-scale removal efforts.

Flood Resilience Through Working-Land Conservation: Assessment Of Wetland Inundation Dynamics Across Wrp, Wma, Wpa, Padus And Crp Lands In Nebraska (2018–2024), Pranjay Joshi

Community and Regional Planning Program: Theses

This study first confirms whether Nebraska’s wetlands are still functioning hydrologically in ways that reduce flood impacts. Wetlands are known to lessen flood damage by storing water, slowing runoff, and moderating peak flows, but these benefits depend on the wetlands’ ability to maintain inundation and saturation through time. Many wetlands across the state have undergone drainage, hydrologic alteration, or isolation from surrounding watersheds, raising uncertainty about their present-day functioning. Using seven years of Sentinel-2 imagery processed in Google Earth Engine, this research establishes a clear, long-term record of inundation patterns across thousands of wetland parcels. This analysis verifies which wetlands …

An Integrated Modeling Framework To Evaluate Circularity Of The Corn–Water–Ethanol–Beef Nexus, Heydi Han

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This dissertation examines the transition from conventional linear agricultural and food bioenergy systems toward more circular, resilient, and resource-efficient configurations. Prior research indicates that spatial and temporal variability in soil, weather, animal biological responses, and management decisions strongly influences productivity, nutrient-use efficiency, and profitability. Studies have also shown that a diversified circular system can buffer these sources of variability, improving stability and adaptive capacity. Building on these insights, the central focus of this work is to develop an integrated modeling framework to evaluate circularity within the Corn-Water-Ethanol-Beef (CWEB) nexus and explore how climate variability and management choices shape system-wide performance. …

Occurrence Of Per And Polyfluoroalkyl Substances In Rural Wastewater Treatment Plants And Comparison To Large Treatments Plants, Madeleine Rauhauser

Department of Civil and Environmental Engineering: Dissertations, Theses, and Student Research

Per and polyfluoroalkyl substances (PFAS) are a class of compounds defined by their carbon – fluorine bonds, which are incredibly strong. The strength of this bond makes these compounds very useful industrially, they are used as waterproof and grease proof coatings, and as fire retardants. The same thing that makes them useful industrially makes them incredibly recalcitrant in the environment, it is difficult to destroy these compounds. PFAS are also suspected to cause health impacts in people, such as kidney cancer and low birth weights. Wastewater has been commonly identified as a contributor to the amount of PFAS in the …

Climate Change Has Increased Global Evaporative Demand Except In South Asia, Saeed Karimzadeh, Arman Ahmadi, Dennis Baldocchi, Joshua B. Fisher

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Climate change alters how strongly the atmosphere draws water from the land, yet a consistent global assessment of this evaporative demand has been lacking. Here, we analyze 45 years of climate data and global models to quantify trends in the key drivers—air temperature, humidity, radiation, wind speed, and cloud cover—that determine the atmosphere’s drying power. We find that evaporative demand has increased worldwide, indicating a stronger atmospheric thirst, except in South Asia, where it has declined. There, widespread irrigation has increased soil and air moisture, enhanced cloud formation, and reduced sunlight reaching the surface, counteracting the global signal. These contrasting …

Resource Assessment Report No.6: Western Rock Lobster Resource - 2025 Update Assessment, Simon De Lestang, Emma-Jade Tuffley

Resource Assessment Reports

Executive Summary

The western rock lobster (WRL) fishery is considered sustainable with catches being slightly below those associated with the maximum economic yield (MEY) proxy (39% harvest rate), which ensures the large lobster biomass and economical catch rates are maintained. The marine environment continues to be the biggest driver in stock dynamics with post larval recruitment (puerulus) and adult behaviour, including catchability, strongly influenced by oceanic conditions. Recent seasons have seen strong Leeuwin Currents and warm ocean conditions. Over the past few seasons, puerulus settlement levels have been below average at numerous locations and it has been almost 10 years …

Direct And Indirect Effects Of Water-Table Levels On Redox-Active Organic Matter Reduction In An Alaskan Rich Fen, J. E. Rush, E. S. Kane, Jason K. Keller, J. C. Bowen, Cassandra A. Zalman, E. S. Euskirchen, K. H. Wyatt, A. R. Rober, E. S. Hinckley

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Redox-active organic matter (RAOM) reduction is an important control on methane production in northern peatlands, but it is unclear how global climate change will affect RAOM reduction. We investigated the effects of water-table levels on RAOM reduction by leveraging a long-term water-table manipulation experiment in an Alaskan fen, which includes Lowered and Raised treatment plots relative to a Control. Common substrate peat was incubated in each plot during one summer of experimental manipulation and another summer of site-wide flooding. During experimental manipulation, common substrate RAOM was more reduced in the Raised plot than the Lowered plot at both 10–20 cm …

Quantifying Single, Compound And Cascading Climate Extremes: Implications For Agricultural Resilience In California, Shahryar Fazli, Wenzhao Li, Rejoice Thomas, Surendra Maharjan, Mohammad Sina Jahangiri, Andre Daccache, Hesham Morgan, Mohamed Allali, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

As climate change intensifies, extreme weather increasingly threatens California’s Central Valley (CV), a vital agricultural region exposed to rising risks from heatwaves (HW), droughts (DR), and compound extremes. These events disrupt crop productivity and broader processes like water demand, pest dynamics, and soil stability, posing systemic risks. This study examines the spatiotemporal dynamics of HW, coldwaves (CW), DR, excessive rainfall (ER), and their compound (e.g., HWDR) and cascading forms from 1951 to 2025, using NOAA nClimGrid-Daily data. We assessed trends in frequency, intensity, and duration over long-term (1951–2025) and mid-term (1981–2025) periods. Results show increasing HW and DR in the …

New Precipitation Is Scarce In Deep Soils: Findings From 47 Forest Plots Spanning Switzerland, Emily I. Burt, Scott T. Allen, Sabine Braun, Simon Tresch, James W. Kirchner, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

As precipitation infiltrates into soils, it can recharge them, displace previously stored waters, or bypass already-filled pores. Using 3,697 δ2H and δ18O measurements of water collected nearly monthly over >3 years in 47 forest plots across Switzerland, we present a systematic investigation of the controls on mobile soil water transport. We quantified the lags and damping of water as it percolates downward using young water fraction analysis (Fyw), and the fractions of soil water composed by precipitation that fell within the previous month (new water fractions, Fnew). The Fnew of water sampled in surface soils ranged …

Assessing Meteorological Impacts On Hydrological Switches In The Conus, Surendra Maharjan, Wenzhao Li, Sujan Shrestha, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Hydrological switches, defined as rapid transitions between extreme meteorological events such as droughts and floods, are becoming increasingly frequent across the contiguous United States (CONUS) due to climate variability. This study analyzes the spatial and temporal patterns of these hydrological switches and their correlation with large-scale meteorological indices, such as the Standardized Precipitation Index (SPI) and Standardized Precipitation Evapotranspiration Index (SPEI). Streamflow data from the US Geological Survey (USGS) is analyzed to investigate the impact of meteorological drivers on hydrological variability. Results indicate that regions dependent on snowmelt exhibit delayed hydrological responses to climatic conditions, while areas in the Eastern …

Evaluation Of Performance Characteristics And Groundwater Contamination Risks Associated With On-Farm Swine Carcass Disposal Via Composting And Shallow Burial With Carbon, Gustavo Castro Garcia

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This dissertation evaluates the performance of three on-farm swine carcass disposal methods: whole carcass composting (WCC), ground carcass composting (GCC), and shallow burial with carbon (SBC), focusing on biosecurity factors and groundwater contamination risks. Foreign animal diseases (FADs), such as African swine fever and classical swine fever, pose severe economic and animal well-being risks if introduced to the United States. With confirmation of an FAD, swine movement will be halted, creating an urgent need for practical, biosecure, and environmentally responsible on-farm disposal strategies for swine carcasses. Nebraska, as a leading swine-producing state, exemplifies the vulnerability of high-density livestock regions to …

Surveys And Modeling: Using An Existing Survey To Describe And Compare Populations To Better Inform On Groundwater Model Inputs, M. Austin Wise

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

The Mississippi River Valley “Alluvial Aquifer” is among the most agriculturally significant aquifers in the United States. However, parts of the aquifer are exceeding sustainable yield as development of the water source continues. Survey research in other aquifers, such as the High Plains (Ogallala) Aquifer, has helped to understand the perceptions and attitudes of irrigators withdrawing from their aquifers. This led to numerous questions: What are the attitudes of irrigators in the Alluvial Aquifer region? How do they compare to irrigators in other regions of the country? Can their intentions be used to generate more accurate inputs when modeling adoption …

Exploring The Application Of Repeated Microgravity Surveys To Monitor Groundwater Level Variations In Nebraska, Kaitlin M. Steinauer

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

Groundwater is an important resource in the state of Nebraska for supporting industries and ecosystems. Monitoring this vast resource ensures its continued availability for generations to come. However, monitoring utilizes well data, and if a well is not present in a desired location, geophysical methods can be explored. This project tests the capability of repeated gravity surveys over Nebraska’s aquifers to monitor groundwater levels throughout 2024.

Two study areas were selected in Eastern Nebraska. The first is in Oakland, Nebraska, over a confined aquifer system. The second is in Plymouth, Nebraska, and exhibits unconfined conditions. Four sites were chosen to …