Oceanography and Atmospheric Sciences and Meteorology Commons^™

Zebra And Quagga Mussel Early-Detection Monitoring In High Risk Oregon Waters 2014, Steve W. Wells, Mark D. Sytsma

Center for Lakes and Reservoirs Publications and Presentations

Zebra and quagga mussels (Dreissena polymorpha and D. rostriformis bugensis, respectively) were not detected by Oregon Department of Fish and Wildlife (ODFW) and Portland State University (PSU) during their early detection sampling in Oregon water bodies during 2014. Six high-risk Oregon water bodies were sampled for planktonic larvae and adult mussels during the August to September period. A total of 37 plankton samples were collected and over 520,000 liters of reservoir/lake water were filtered through 64-μm mesh nets during plankton sample collection. The greatest sampling effort occurred in Emigrant Lake, Lake Billy Chinook, and Prineville Reservoir but sampling also occurred …

Surface Temperature Probability Distributions In The Narccap Hindcast Experiment: Evaluation Methodology, Metrics, And Results, Paul C. Loikith, Duane E. Waliser, Huikyo Lee, Jinwon Kim, J. David Neelin, Benjamin R. Lintner, Seth Mcginnis, Chris A. Mattmann, Linda O. Mears

Geography Faculty Publications and Presentations

Methodology is developed and applied to evaluate the characteristics of daily surface temperature distributions in a six-member regional climate model (RCM) hindcast experiment conducted as part of the North American Regional Climate Change Assessment Program (NARCCAP). A surface temperature dataset combining gridded station observations and reanalysis is employed as the primary reference. Temperature biases are documented across the distribution, focusing on the median and tails. Temperature variance is generally higher in the RCMs than reference, while skewness is reasonably simulated in winter over the entire domain and over the western United States and Canada in summer. Substantial differences in skewness …

Oregon Lake Watch, 2015 Annual Report, Samuel Cimino, Rich Miller, Angela L. Strecker

Center for Lakes and Reservoirs Publications and Presentations

The Oregon Lake Watch (OLW) volunteer monitoring program completed its third year of operation during 2015 with a focus on early detection of aquatic invasive species (AIS) and water quality status and trend assessments for the better management of Oregon’s lakes and reservoirs. AIS surveys emphasized the detection of Watch List aquatic plant and species that can have a negative impacts on the beneficial uses of our waterbodies. Water transparency and temperature measurements were used to track the condition of volunteers' lakes.

Thirty-one Oregon lakes have been surveyed during the OLW’s three years, 16 of which were surveyed during 2015. …

Ensemble Prediction And Data Assimilation For Operational Hydrology, Dong-Jun Seo, Yuqiong Liu, Hamid Moradkhani, Albrecht Weerts

Civil and Environmental Engineering Faculty Publications and Presentations

This special section in the Journal of Hydrology will discuss the need for advancing hydrologic ensemble prediction and DA.

2014 Aquatic Weed Surveys In Timothy Lake, Lake Harriet, North Fork Reservoir, Faraday Lake, And Estacada Lake, Rich Miller, Mark D. Sytsma, Jeffrey Thomas Brittain

Center for Lakes and Reservoirs Publications and Presentations

The Clackamas River Hydroelectric Project No. 2195 (Project) is located on the Oak Grove Fork of the Clackamas River and the mainstem of the Clackamas River in Clackamas County, Oregon. Reservoirs included in the Project include Timothy Lake, Lake Harriet, North Fork Reservoir, Faraday Lake, and Estacada Lake. The operator of the Project, Portland General Electric (PGE), was issued a license on December 21, 2010 by the Federal Energy Regulatory Commission (FERC) for continued operations and maintenance. The Final Environmental Impact Statement (FEIS) for the license noted that regular surveys for invasive aquatic weed species would be conducted as part …

Efficacy Of Plastic Mesh Tubes In Reducing Herbivory Damage By The Invasive Nutria (Myocastor Coypus) In An Urban Restoration Site, Trevor R. Sheffels, Mark D. Sytsma, Jacoby Carter, Jimmy D. Taylor

Environmental Science and Management Faculty Publications and Presentations

The restoration of stream corridors is becoming an increasingly important component of urban landscape planning, and the high cost of these projects necessitates the need to understand and address potential ecological obstacles to project success. The nutria (Myocastor coypus) is an invasive, semi-aquatic rodent native to South America that causes detrimental ecological impacts in riparian and wetland habitats throughout its introduced range, and techniques are needed to reduce nutria herbivory damage to urban stream restoration projects. We assessed the efficacy of standard Vexar® plastic mesh tubes in reducing nutria herbivory damage to newly established woody plants. The study was conducted …

Physical, Chemical And Biological Assessment Of Yoncalla Log Ponds, Rich Miller, Mark D. Sytsma, Angela L. Strecker

Center for Lakes and Reservoirs Publications and Presentations

The Yoncalla Log Ponds are a series of four ponds located in within the city limits of the town in Yoncalla in northern Douglas County, Oregon. The ponds were created in stages between the late 1930s and the 1950s and used for log storage through the 1970s (North Douglas Betterment 2014). North Douglas Betterment purchased the land surrounding the ponds and contracted with the Center for Lakes and Reservoirs at Portland State University to assess the current morphometry, vegetation and water quality status of the ponds and provide recommendations for management of the aquatic vegetation. The scope of this document …

Secondary Organic Aerosol Formation And Organic Nitrate Yield From No3 Oxidation Of Biogenic Hydrocarbons, Juliane L. Fry, Danielle C. Draper, Kelley C. Barsanti, James N. Smith, John Ortega, Paul M. Winkler, Michael J. Lawler, Steven S. Brown, Peter M. Edwards, Ronald C. Cohen, Lance Lee

Civil and Environmental Engineering Faculty Publications and Presentations

The secondary organic aerosol (SOA) mass yields from NO3 oxidation of a series of biogenic volatile organic compounds (BVOCs), consisting of five monoterpenes and one sesquiterpene (α-pinene, β-pinene, Δ-3-carene, limonene, sabinene, and β-caryophyllene), were investigated in a series of continuous flow experiments in a 10 m3 indoor Teflon chamber. By making in situ measurements of the nitrate radical and employing a kinetics box model, we generate time-dependent yield curves as a function of reacted BVOC. SOA yields varied dramatically among the different BVOCs, from zero for α-pinene to 38−65% for Δ-3-carene and 86% for β-caryophyllene at mass loading of 10 …

Macroinvertebrates And Excessive Fine Sediment Conditions In Oregon Coastal Streams, Patrick M. Edwards

Dissertations and Theses

The Pacific Coastal ecoregion contains large tracts of economically important forest lands that also serve as critical stream habitat for endangered Salmonids. Excessive fine sediment deposition in streams of this region is a major environmental concern in the region but difficult to measure directly. The use of stream invertebrates to monitor fine sediment conditions in streams requires careful consideration of several important factors that complicate their use as bioindicators including high spatial and temporal variability and covariance with other environmental variables.

To evaluate the use of stream invertebrates as bioindicators of excessive fine sediment, three hypotheses were tested. The first …

Quantifying The Impacts Of Initial Condition And Model Uncertainty On Hydrological Forecasts, Caleb Matthew Dechant

Dissertations and Theses

Forecasts of hydrological information are vital for many of society's functions. Availability of water is a requirement for any civilization, and this necessitates quantitative estimates of water for effective resource management. The research in this dissertation will focus on the forecasting of hydrological quantities, with emphasis on times of anomalously low water availability, commonly referred to as droughts. Of particular focus is the quantification of uncertainty in hydrological forecasts, and the factors that affect that uncertainty. With this focus, Bayesian methods, including ensemble data assimilation and multi-model combinations, are utilized to develop a probabilistic forecasting system. This system is applied …

Impact Of Soil Moisture–Atmosphere Interactions On Surface Temperature Distribution, Alexis Berg, Benjamin R. Lintner, Kirsten L. Findell, Sergey Malyshev, Paul C. Loikith, Pierre Gentine

Geography Faculty Publications and Presentations

Understanding how different physical processes can shape the probability distribution function (PDF) of surface temperature, in particular the tails of the distribution, is essential for the attribution and projection of future extreme temperature events. In this study, the contribution of soil moisture–atmosphere interactions to surface temperature PDFs is investigated. Soil moisture represents a key variable in the coupling of the land and atmosphere, since it controls the partitioning of available energy between sensible and latent heat flux at the surface. Consequently, soil moisture variability driven by the atmosphere may feed back onto the near-surface climate—in particular, temperature. In this study, …

Osmb Final Report, Task 7: Online Atlas Of Oregon Lakes - Aquatic Invasive Species Interface, Rich Miller, Mark D. Sytsma

Center for Lakes and Reservoirs Publications and Presentations

In order to educate a broad cross section of the public about Aquatic Invasive Species (AIS) distributions and survey efforts in Oregon’s lakes and reservoirs, database connections were created to display AIS information on the Online Atlas of Oregon Lakes (aol.research.pdx.edu/). The connections allowed for the dynamic display of AIS survey records stored in three separate databases: the Center for Lakes and Reservoir’s Oregon Aquatic Plant and Mussel Databases and the iMapInvasives database. AIS survey records collected by the Center for Lakes and Reservoirs were also reported to the iMapInvasives database.

Osmb Final Report, Task 4: Oregon Lake Watch, Angela L. Strecker, Rich Miller, Vanessa Morgan

Center for Lakes and Reservoirs Publications and Presentations

The Oregon Lake Watch (OLW) volunteer monitoring program was resurrected after over a decade in hibernation. The new program was designed to educate the public about threats of aquatic invasive species (AIS), provide early detection of AIS invasions, and provide long term water quality data for the better management of Oregon’s lakes and reservoirs. Protocols were created for citizen scientists to survey for AIS, collect temperature and water clarity data, and record the data through an online data entry portal. An OLW website was developed to educate about AIS and provide survey protocols and identification materials to volunteers. AIS surveys …

The Influence Of Recurrent Modes Of Climate Variability On The Occurrence Of Winter And Summer Extreme Temperatures Over North America, Paul C. Loikith, Anthony J. Broccoli

Geography Faculty Publications and Presentations

The influence of the Pacific–North American (PNA) pattern, the northern annular mode (NAM), and the El Ni~no–Southern Oscillation (ENSO) on extreme temperature days and months over North America is examined. Associations between extreme temperature days and months are strongest with the PNA and NAM andweaker for ENSO. In general, the associationwith extremes tends to be stronger onmonthly than daily time scales and for winter as compared to summer. Extreme temperatures are associated with the PNAandNAMin the vicinity of the centers of action of these circulation patterns; however, many extremes also occur on days when the amplitude and polarity of these …

Osmb Final Report: Task 5. Zebra And Quagga Mussel Early-Detection Monitoring In High Risk Oregon Waters, Steve W. Wells, Mark Sytsma

Center for Lakes and Reservoirs Publications and Presentations

Neither zebra nor quagga mussels (Dreissena polymorpha and D. rostriformis bugensis, respectively) were detected by Portland State University (PSU) during their early detection sampling in Oregon water bodies during 2013. PSU conducted sampling for planktonic larvae, juvenile, and adult mussels at nine Oregon water bodies during the July to August period coinciding with water temperatures favorable for mussel spawning. A total of 113 plankton samples were collected and over 1.6 million liters of lake water were filtered through 63-μm mesh nets during plankton sample collection. The greatest sampling effort occurred in East Lake, Prineville Reservoir, and Paulina Lake; these water …

Aquatic Invasive Species Surveys Of Eastern Oregon Waterbodies In 2013 And 2014, Rich Miller, Mark D. Sytsma

Center for Lakes and Reservoirs Publications and Presentations

Early detection aquatic invasive species (AIS) surveys were conducted at 33 Eastern Oregon waterbodies during the summers of 2013 and 2014. Submerged aquatic plants, gastropods, bivalves, and crayfish were collected using a thatch rake, benthic dredge, plankton net, and modified minnow traps. Shoreline aquatic noxious weeds were noted when present and water quality characteristics were measured. Two AIS snail species, one AIS crayfish species, and five AIS plant species were detected during the surveys. Big-ear radix snails (Radix auricularia) were newly detected at 14 waterbodies distributed across the survey area. Chinese mystery snails (Cipangopaludina chinensis) were …

Fish Species Introductions Provide Novel Insights Into The Patterns And Drivers Of Phylogenetic Structure In Freshwaters, Angela L. Strecker, Julian D. Olden

Environmental Science and Management Faculty Publications and Presentations

Despite long-standing interest of terrestrial ecologists, freshwater ecosystems are a fertile, yet unappreciated, testing ground for applying community phylogenetics to uncover mechanisms of species assembly. We quantify phylogenetic clustering and overdispersion of native and non-native fishes of a large river basin in the American Southwest to test for the mechanisms (environmental filtering versus competitive exclusion) and spatial scales influencing community structure. Contrary to expectations, non-native species were phylogenetically clustered and related to natural environmental conditions, whereas native species were not phylogenetically structured, likely reflecting human-related changes to the basin. The species that are most invasive (in terms of ecological impacts) …

Osmb Final Report: Task 3. Containment Strategies For Eurasian Watermilfoil Infested Central Or Lakes, Vanessa Morgan, Mark Sytsma

Center for Lakes and Reservoirs Publications and Presentations

In recent years, public awareness of aquatic invasive species (AIS) has increased considerably in Oregon and elsewhere in the western U.S.. News articles, boat inspection stations and AIS permit programs have drawn attention to the threat of aquatic invasive species, especially animals like zebra mussels (Dreissena polymorpha), quagga mussels (Dreissena bugensis), and New Zealand mudsnails (Potamopyrgus antipodarum). However, invasive aquatic plants are also capable of causing severe impacts and may similarly be transferred between waterbodies on boats, trailers or other equipment. Heavy infestations can hinder recreational use by motorized and non-motorized boats, snag fishing lines, threaten the safety of swimmers …

Osmb Final Report: Task 6. Tenmile Lake Boat Wash Effectiveness Monitoring, Samuel Cimino, Angela L. Strecker

Center for Lakes and Reservoirs Publications and Presentations

Public awareness of aquatic invasive species and proper boat cleaning procedures may prove to be beneficial in reducing the transport and establishment of aquatic invasive species like New Zealand mud snails and zebra and quagga mussels as well as hydrilla and Eurasian watermilfoil. The primary objectives of this research project were to observe the use and determine the efficacy of a public boat wash station as well as increase the public’s awareness of proper boat cleaning procedures and aquatic invasive species. The Tenmile Lakes Basin Partnership, Oregon State Marine Board, and the United States Forest Service (USFS) have undertaken an …

Scenario Development And Analysis Of Freshwater Ecosystem Services Under Land Cover And Climate Change In The Tualatin And Yamhill River Basins, Oregon, Robert Wesley Hoyer

Dissertations and Theses

Humans make decisions within ecosystems to enhance their well-being, but choices can lead to unintended consequences. The ecosystem services (ES) approach supports decision-making that considers all environmental goods and services. Many challenges remain in the implementation of the ES approach like how specific ES vary through space and time. We address this research problem using the Tualatin and Yamhill river basins in northwestern Oregon as a study area. Freshwater ES are quantified and mapped with the spatially-explicit ES modeling tool, Integrated Valuation of Ecosystem Services and Tradeoffs (InVEST). In chapter II, we develop a simple urban land cover change modeling …

Identification And Characterization Of Fine Particulate Matter Hot Spots On An Urban Arterial Corridor Integrating Probe Vehicle, Traffic And Land Use Data, Katherine Eleanor Bell

Dissertations and Theses

The purpose of this study is to explore the use of integrated probe vehicle, traffic and land use data to identify and characterize fine particulate matter (PM[subscript 2.5]) hot spot locations on urban arterial corridors. In addition, a preliminary analysis is conducted to consider volatile organic compound (VOC) hot spot locations. A pollutant hot spot is defined as a location on a corridor in which the mean pollutant concentrations are consistently above the 85th percentile of pollutant concentrations when compared to all locations along the corridor. In order to collect data for this study, an electric vehicle was equipped with …

Nineteenth Century North American And Pacific Tidal Data: Lost Or Just Forgotten?, Stefan A. Talke, David A. Jay

Civil and Environmental Engineering Faculty Publications and Presentations

Tide data are the oldest and longest oceanographic records and comprise one of the few tools for understanding, quantifying, and separating century-scale human and climate impacts on the coastal zone. Our archival research indicates that continuous measurements of tides began in 1844 in the western Atlantic, 1853 in the Eastern Pacific, and 1858 in the Western Pacific. At least 50 multiyear tide series existed by the year 1900. With few exceptions, however, these 19th and early 20th century measurements have not been analyzed in more than a century and have been forgotten and neglected by the scientific community. This article …

Methyl Halide Production By Calcareous Periphyton Mats From The Florida Everglades, Ann Eileen Raffel

Dissertations and Theses

Methyl halides are trace gases with both natural and anthropogenic origins. Once generated, these gases transport chlorine and bromine into the stratosphere, where they play an important role in ozone depleting catalytic cycles. The Florida Everglades is one location where methyl halide emissions have been proposed to be elevated due to high primary production and ionic halogens. This region also provides a unique study environment due to salt water intrusions, which occur during storm or low marsh water level-high tide events. The purpose of this research was twofold. First, quantification of methyl chloride (CH₃Cl) and methyl bromide (CH …

Environmental Factors Influencing Diatom Communities In Antarctic Cryoconite Holes, Lee F. Stanish, Elizabeth A. Bagshaw, Diane M. Mcknight, Andrew G. Fountain, Martyn Tranter

Geology Faculty Publications and Presentations

Cryoconite holes are ice-bound habitats that can act as refuges for aquatic and terrestrial microorganisms on glacier surfaces. In the McMurdo Dry Valleys of Antarctica, these holes are often capped by an ice lid that prevents the exchange of material and gases with the surrounding atmosphere and aquatic environment. Diatoms have been documented in cryoconite holes, and recent findings suggest that these habitats may harbour a distinctive diatom flora compared to the surrounding aquatic environments. In this study, we examined diatom community composition in cryoconite holes and environmental correlates across three glaciers in Taylor Valley, Antarctica. The diatom communities were …

Effects Of Runoff Sensitivity And Catchment Characteristics On Regional Actual Evapotranspiration Trends In The Conterminous Us, Il-Won Jung, Heejun Chang, John Risley

Geography Faculty Publications and Presentations

An understanding of the role of hydro-climatic and geographic regimes on regional actual evapotranspiration (AET) change is essential to improving our knowledge on predicting water availability in a changing climate. This study investigates the relationship between AET change for a 60 year period (1951–2010) and the runoff sensitivity in 255 undisturbed catchments over the US. The runoff sensitivity to climate change is simply defined as the relative magnitude between runoff and precipitation changes with time. Runoff sensitivity can readily explain the conflicting directions of AET changes under similar precipitation change. Under increasing precipitation, AET decreases when runoff is increasing more …

Oregon Dreissenid Mussel: Rapid Response Plan, Robyn Draheim, Rick Boatner, Glenn Dolphin, Lisa Debruyckere

Center for Lakes and Reservoirs Publications and Presentations

In 2007, both zebra mussels (Dreissena polymorpha) and quagga mussels (Dreissena rostriformis bugensis) were found to have established populations west of the Rocky Mountains. The risk posed to the Pacific Northwest by the proximity of these new infestations is significant. This plan was developed in response to the increasing likelihood of the successful transport and introduction of these species into the State of Oregon and Pacific Northwest. Although prevention remains the most cost-effective means of addressing potential infestations of aquatic invasive species, if prevention efforts fail, the State of Oregon must be prepared to respond rapidly …

Characterization Of Secondary Organic Aerosol Precursors Using Two-Dimensional Gas Chromatography With Time Of Flight Mass Spectrometry (Gc×Gc/Tofms), Melissa Jordan Roskamp

Dissertations and Theses

The oxidation of volatile organic compounds (VOCs) plays a role in both regional and global air quality through the formation of secondary organic aerosols (SOA). More than 1000TgC/yr of non-methane VOCs are emitted from biogenic sources (significantly greater than from anthropogenic sources). Despite this magnitude and potential importance for air quality, the body of knowledge around the identities, quantities and oxidation processes of these compounds is still incomplete (e.g., Goldstein & Galbally, 2007; Robinson et al., 2009). Two-dimensional gas chromatography paired with time-of-flight mass spectrometry (GC×GC/TOFMS) is a powerful analytical technique which is explored here for its role in better …

Incorporating Chemical Activity And Relative Humidity Effects In Regional Air Quality Modeling Of Organic Aerosol Formation, Marguerite Colasurdo Marks

Dissertations and Theses

Atmospheric particulate matter is known to have significant effects on human health, visibility, and global climate. The magnitudes of these effects, however, depend in complex ways on chemical composition, relative humidity, temperature, phase state, and other parameters. Current regional air quality models such as CMAQ (Community Multiscale Air Quality model) ignore many of these considerations, and consider that the formation of secondary organic aerosol (SOA) can be calculated by assuming thermodynamic ideality in the organic particulate matter (OPM) phase as well as negligible uptake of water into the OPM phase. Theoretical predictions and model simulations considering non-ideality and water uptake …

Ccaat/Enhancer-Binding Protein Delta (C/Ebp-Delta) Expression In Antarctic Fishes: Implications For Cell Cycle And Apoptosis, Isaac Martin Sleadd

Dissertations and Theses

Chapter 1: Antarctic fishes are extremely cold adapted. Despite their inability to upregulate heat shock proteins, recent studies have demonstrated a capacity for heat response in these animals. A cDNA microarray study looked at the Notothenioid fish Trematomus bernacchii and revealed heat sensitivities for hundreds of genes, two of which code for members of the CCAAT/Enhancer-binding protein (C/EBP) family of transcription factors. These molecular switches are best known for their roles in apoptosis, inflammation and cell cycle arrest. This dissertation further elucidates the role of C/EBP-delta in the Antarctic fishes T. bernacchii and Pagothenia borchgrevinki.

Chapter 2: C/EBP-delta is constitutively …

Classifying Reanalysis Surface Temperature Probability Density Functions (Pdfs) Over North America With Cluster Analysis, Paul C. Loikith, Benjamin R. Lintner, Jinwon Kim, Huikyo Lee

Geography Faculty Publications and Presentations

An important step in projecting future climate change impacts on extremes involves quantifying the underlying probability distribution functions (PDFs) of climate variables. However, doing so can prove challenging when multiple models and large domains are considered. Here an approach to PDF quantification using k-means clustering is considered. A standard clustering algorithm (with k = 5 clusters) is applied to 33 years of daily January surface temperature from two state-of-the-art reanalysis products, the North American Regional Reanalysis and the Modern Era Retrospective Analysis for Research and Applications. The resulting cluster assignments yield spatially coherent patterns that can be broadly related to …