Soil Science Commons^™

Noncanonical Alternative Polyadenylation Contributes To Gene Regulation In Response To Hypoxia, Laura De Lorenzo, Reed Sorenson, Julia Bailey-Serres, Arthur G. Hunt

Plant and Soil Sciences Faculty Publications

Stresses from various environmental challenges continually confront plants, and their responses are important for growth and survival. One molecular response to such challenges involves the alternative polyadenylation of mRNA. In plants, it is unclear how stress affects the production and fate of alternative mRNA isoforms. Using a genome-scale approach, we show that in Arabidopsis thaliana, hypoxia leads to increases in the number of mRNA isoforms with polyadenylated 3′ ends that map to 5′-untranslated regions (UTRs), introns, and protein-coding regions. RNAs with 3′ ends within protein-coding regions and introns were less stable than mRNAs that end at 3′-UTR poly(A) sites. …

Global Land Carbon Sink Response To Temperature And Precipitation Varies With Enso Phase, Yuanyuan Fang, Anna M. Michalak, Christopher R. Schwalm, Deborah N. Huntzinger, Joseph A. Berry, Philippe Ciais, Shilong Piao, Benjamin Poulter, Joshua B. Fisher, Robert B. Cook, Daniel Hayes, Maoyi Huang, Akihiko Ito, Atul Jain, Huimin Lei, Chaoqun Lu, Jiafu Mao, Nicholas C. Parazoo, Shushi Peng, Daniel M. Ricciuto, Xiaoying Shi, Bo Tao, Hanqin Tian, Weile Wang, Yaxing Wei, Jia Yang

Plant and Soil Sciences Faculty Publications

Climate variability associated with the El Niño-Southern Oscillation (ENSO) and its consequent impacts on land carbon sink interannual variability have been used as a basis for investigating carbon cycle responses to climate variability more broadly, and to inform the sensitivity of the tropical carbon budget to climate change. Past studies have presented opposing views about whether temperature or precipitation is the primary factor driving the response of the land carbon sink to ENSO. Here, we show that the dominant driver varies with ENSO phase. Whereas tropical temperature explains sink dynamics following El Niño conditions (r TG,P = 0.59, p …

Interpretive Geologic Cross Sections Across Lower Platte North Natural Resources District, Nebraska (Ccs-20), Dana Divine

Conservation and Survey Division: Faculty and Staff Publications

No abstract provided.

Nutrient Addition Shifts Plant Community Composition Towards Earlier Flowering Species In Some Prairie Ecoregions In The U.S. Central Plains, Lori Biederman, Brent Mortensen, Philip Fay, Nicole Hagenah, Johannes Knops, Kimberly La Pierre, Ramesh Laungani, Eric Lind, Rebecca L. Mcculley, Sally Power, Eric Seabloom, Pedro Tognetti

Plant and Soil Sciences Faculty Publications

The distribution of flowering across the growing season is governed by each species’ evolutionary history and climatic variability. However, global change factors, such as eutrophication and invasion, can alter plant community composition and thus change the distribution of flowering across the growing season. We examined three ecoregions (tall-, mixed, and short-grass prairie) across the U.S. Central Plains to determine how nutrient (nitrogen (N), phosphorus, and potassium (+micronutrient)) addition alters the temporal patterns of plant flowering traits. We calculated total community flowering potential (FP) by distributing peak-season plant cover values across the growing season, allocating each species’ cover to only those …

Use Of Annual Phosphorus Loss Estimator (Aple) Model To Evaluate A Phosphorus Index, Nicole M. Fiorellino, Joshua M. Mcgrath, Peter A. Vadas, Carl H. Bolster, Frank J. Coale

Plant and Soil Sciences Faculty Publications

The Phosphorus (P) Index was developed to provide a relative ranking of agricultural fields according to their potential for P loss to surface water. Recent efforts have focused on updating and evaluating P Indices against measured or modeled P loss data to ensure agreement in magnitude and direction. Following a recently published method, we modified the Maryland P Site Index (MD-PSI) from a multiplicative to a component index structure and evaluated the MD-PSI outputs against P loss data estimated by the Annual P Loss Estimator (APLE) model, a validated, field-scale, annual P loss model. We created a theoretical dataset of …

Validating A Universal Model Of Particle Transport Lengths With Laboratory Measurements Of Suspended Grain Motions, Robert C. Mahon, Brandon Mcelroy, Suleyman Naqshband

Earth and Environmental Sciences Faculty Publications

t The mechanics of sediment transport are of fundamental importance for fluvio-deltaic morphodynamics. The present study focuses on quantifying particle motions and trajectories across a wide range of flow conditions. In particular, a continuous model is presented that predicts particle travel distances for saltation and suspension based on Rouse number and relative grain roughness. By utilizing a series of eight video cameras in a plexiglass flume direct measurements of the distributions of particle travel distances (excursion lengths) were obtained. To this end, experiments were carried out in dark under black lights with fluorescent painted plastic and quartz sand particles. For …

Soil Science Lesson Plan For The Cal Poly Learn By Doing Lab, Kelsey Ormonde

Natural Resources Management and Environmental Sciences

To increase interest in soil science and other related sciences, educational materials need to be tailored to appeal to younger students. The purpose of this project was to create a soil science lesson plan that could be utilized by the Cal Poly Learn By Doing Lab. Information from several articles, textbooks, lesson plans, and websites was reviewed to create a soil science lesson plan for students in 5-8^th grade. The lesson plan focused on the three sub-disciplines of soil science; physical, chemical, and biological. Activities were created to correspond to the three sub-disciplines. Alternate activities were created to allow …

Development Of A Multiband Remote Sensing System For Determination Of Unsaturated Soil Properties, Cyrus D. Garner

Graduate Theses and Dissertations

A multiband system including active microwave sensing and visible-near infrared reflectance spectroscopy was developed to measure unsaturated soil properties in both field and laboratory environments. Remote measurements of soil volumetric water content (θv), soil water matric potential (ψ), and soil index properties (liquid limit [LL], plastic limit [PL], and clay fraction [CF]) were conducted. Field-based measurement of θv was conducted using a ground-based radar system and field measurements within 10 percentage points of measurements acquired with traditional sampling techniques were obtained. Laboratory-based, visible and near infrared spectroscopy was found to be capable of obtaining empirical, soil specific regression functions (partial …

Influence Of Prescribed Burning On Upland Soil Properties In Mark Twain National Forest, Southeast Missouri Ozarks, Megan Lynn Hente

Graduate Theses/Dissertations

In the Mark Twain National forest there is a collaborative effort to restore parts of the forest to its original shortleaf pine-oak woodland areas by using a combination of silviculture and prescribed fire. The purpose of this project is to assess the effects of prescribed burning on upland forest and soil physical properties that influence erosion processes across a gradient of burned sites of different ages and unburned sites. A combination of geospatial, field, laboratory, statistical (one-way ANOVA) and modeling (USLE) methods were used to assess the effects of prescribed burns on forest and soil characteristics in Big Barren Creek …

Effect Of Foliage And Root Carbon Quantity, Quality, And Fluxes On Soil Organic Carbon Stabilization In Montane Aspen And Conifer Stands In Utah, Antra Boča

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Soil organic carbon (SOC) positively affects many soil properties (e.g., fertility and water holding capacity), and the amount of carbon (C) in soil exceeds the amount in the atmosphere by about three times. Forest soils store as much C as is found in trees. Tree species differ in their effect on SOC pools. Quaking aspen forests in the Western US often store more stable SOC in the mineral soil than nearby conifers. During the last decades a decline in aspen cover, often followed by conifer encroachment, has been documented. A shift from aspen to conifer overstories may negatively affect the …

Sclerocactus Wetlandicus: Habitat Characterization, Seed Germination And Mycorrhizal Analysis, Kourtney T. Harding

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Uinta Basin hookless cactus (Sclerocactus wetlandicus) is a threatened species native to Eastern Utah. The cactus is found in a landscape highly disturbed by non-renewable energy production. To understand the environmental conditions that support natural growth of this cactus, we asked what types of plants were present in the same areas as the cactus, and if the types of plants were different in environments that were disturbed. From our assessment, we determined that the types of plants present in disturbed areas were drastically different from those present in undisturbed locations. Areas previously used for energy production are …

Draft Nuclear Genome Sequence Of The Liquid Hydrocarbon–Accumulating Green Microalga Botryococcus Braunii Race B (Showa), Daniel R. Browne, Jerry Jenkins, Jeremy Schmutz, Shengqiang Shu, Kerrie Barry, Jane Grimwood, Jennifer Chiniquy, Aditi Sharma, Thomas Daniel Niehaus, Taylor L. Weiss, Andrew T. Koppisch, David T. Fox, Suraj Dhungana, Shigeru Okada, Joe Chappell, Timothy P. Devarenne

Plant and Soil Sciences Faculty Publications

Botryococcus braunii has long been known as a prodigious producer of liquid hydrocarbon oils that can be converted into combustion engine fuels. This draft genome for the B race of B. braunii will allow researchers to unravel important hydrocarbon biosynthetic pathways and identify possible regulatory networks controlling this unusual metabolism.

Catalyzed Synthesis Of Zinc Clays By Prebiotic Central Metabolites, Marcelo I. Guzman, Ruixin Zhou, Kaustuv Basu, Hyman Hartman, Christopher J. Matocha, S. Kelly Sears, Hajatollah Vali

Chemistry Faculty Publications

How primordial metabolic networks such as the reverse tricarboxylic acid (rTCA) cycle and clay mineral catalysts coevolved remains a mystery in the puzzle to understand the origin of life. While prebiotic reactions from the rTCA cycle were accomplished via photochemistry on semiconductor minerals, the synthesis of clays was demonstrated at low temperature and ambient pressure catalyzed by oxalate. Herein, the crystallization of clay minerals is catalyzed by succinate, an example of a photoproduced intermediate from central metabolism. The experiments connect the synthesis of sauconite, a model for clay minerals, to prebiotic photochemistry. We report the temperature, pH, and concentration dependence …

Accelerated Increase In The Arctic Tropospheric Warming Events Surpassing Stratospheric Warming Events During Winter, Shih-Yu (Simon) Wang, Yen-Heng Lin, Ming-Ying Lee, Jin-Ho Yoon, Jonathan D.D. Meyer, Philip J. Rasch

Plants, Soils, and Climate Faculty Publications

In January 2016, a robust reversal of the Arctic Oscillation (AO) took place associated with a rapid tropospheric warming in the Arctic region; this was followed by the occurrence of a classic sudden stratospheric warming in March-April. The succession of these two distinct Arctic warming events provides a stimulating opportunity to examine their characteristics in terms of similarities and differences. Historical cases of these two types of Arctic warming were identified and validated based upon tropical linkages with the Madden-Julian Oscillation and El Niño as well as those documented in previous studies. Our results indicate a recent and accelerated increase …

Evaluating The Impacts Of Grassland Conversions To Experimental Forest On Groundwater Recharge In The Nebraska Sand Hills, Zablon A. Adane

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

The Nebraska Sand Hills grasslands provide the greatest groundwater recharge rates in the High Plains Aquifer. However, the grasslands and their ecological services have become vulnerable to land use change and degradation. This study used a series of field data to investigate the effects of grassland conversions to forest on recharge rates in a century-old experimental forest in the Sand Hills. The results show that the impact of grassland conversion on recharge was dependent on the species and plantation density. Estimated recharge rates beneath the dense plantations represent reductions of 86–94% relative to the native grassland. Results of ¹H …

Alicyclic And Aromatic Carboxylic Acids In Soil Organic Matter: An Investigation Of Potential Origin And Association With Plutonium Using Advanced Analytical Techniques, Nicole Didonato

Chemistry & Biochemistry Theses & Dissertations

Carboxylic acids are a defining component of soil organic matter, responsible for many of the physical and chemical properties, including metal-organic matter interactions, which govern its role as an important constituent of soils. However, there is a shortage of detailed molecular level information regarding orientation and structural arrangement of carboxylic acids within soil organic matter. This dissertation utilizes electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICRMS) as well as solid-state and multi-dimensional nuclear magnetic resonance (NMR) to investigate the molecular formula composition within several organic matter sources and the primary structures that feature carboxylic acids. Soil organic matter …

Modeling The Movement Of Septic Water Chloride Through A Soil Profile, Shawkat Kochary, Tom Byl, Bahzad Noori

Civil and Architectural Engineering Faculty Research

The purpose of this study was to investigate the movement of chloride through a vadose zone located under failed and non-regulated septic tanks of Duhok city, Kurdistan of Iraq, potentially contaminating its groundwater. A physical vadose model (PVM) of a vertical flow direction was built in the laboratory to represent the city soil profile. The size of the PVM was 210 × 122 × 9.7 cm (height, width, and depth). Preliminary soil tests were conducted to better represent the lithology of study area. The PVM was then packed with regional silt clay soil, after modifying its texture, using an innovative …

Responses Of Terrestrial Ecosystem Phosphorus Cycling To Nitrogen Addition: A Meta-Analysis, Qi Deng, Dafeng Hui, Samuel Dennis, Chandra Reddy

Agricultural and Environmental Sciences Faculty Research

Aim

Anthropogenic additions of nitrogen (N) are expected to drive terrestrial ecosystems toward greater phosphorus (P) limitation. However, a comprehensive understanding of how an ecosystem's P cycle responds to external N inputs remains elusive, making model predictions of the anthropogenic P limitation and its impacts largely uncertain.

Location

Global.

Time period

1986-2015.

Major taxa studied

Terrestrial ecosystems.

Methods

We conducted a meta-analysis including 288 independent study sites from 192 articles to evaluate global patterns and controls of 10 variables associated with ecosystem P cycling under N addition.

Results

Overall, N addition increased biomass in plants (+34%) and litter (+15%) as …

Results Of Test-Hole Drilling For Observation Well Planning In The Upper Loup Natural Resources District, Fall 2016, Douglas Hallum, Sue Olafsen Lackey

Conservation and Survey Division: Faculty and Staff Publications

The High Plains Aquifer underlies much of Nebraska (Figure 1). It is the primary source of groundwater within the Upper Loup Natural Resources District (ULNRD) of central Nebraska (Figure 2). Water derived from the aquifer is an important natural resource for the area and supplies water for recreation, wildlife and agriculture, as well as domestic, municipal, and industrial uses. A general lack of water level observations in the region (Figure 3), recently developed groundwater irrigated acres along the upper Calamus River (Figure 4), falling spring water levels measured in existing irrigation wells (Figure 5), and a stable to falling stream …

Carbon Sequestration By Australian Tidal Marshes, Peter I. Macreadie, Q. R. Oliver, J. J. Kelleway, Oscar Serrano, P. E. Carnell, C. J. Ewers Lewis, T. B. Atwood, J. Sanderman, J. Baldock, R. M. Connolly, C. M. Duarte, Paul Lavery, A. Steven, C. E, Lovelock

Research outputs 2014 to 2021

Australia’s tidal marshes have suffered significant losses but their recently recognised importance in CO2 sequestration is creating opportunities for their protection and restoration. We compiled all available data on soil organic carbon (OC) storage in Australia’s tidal marshes (323 cores). OC stocks in the surface 1 m averaged 165.41 (SE 6.96) Mg OC ha − 1 (range 14 – 963 Mg OC ha − 1). The mean OC accumulation rate was 0.55 ± 0.02 Mg OC ha − 1 yr − 1. Geomorphology was the most important predictor of OC stocks, with fluvial sites having twice the stock of OC …

Quantifying The Short-Term Dynamics Of Soil Organic Carbon Decomposition Using A Power Function Model, Weiping Zhou, Jinhong He, Dafeng Hui, Weijun Shen

Biology Faculty Research

Introduction

Soil heterotrophic respiration (R _h, an indicator of soil organic carbon decomposition) is an important carbon efflux of terrestrial ecosystems. However, the dynamics of soil R _h and its empirical relations with climatic factors have not been well understood.

Methods

We incubated soils of three subtropical forests at five temperatures (10, 17, 24, 31, and 38 °C) and five moistures (20, 40, 60, 80, and 100% water holding capacity (WHC)) over 90 days. R _h was measured throughout the course of the incubation. Three types of models (log-linear, exponential, and power model) were fitted to the measurements …

Wayne E. Sabbe Arkansas Soil Fertility Studies 2016, Nathan A. Slaton

Arkansas Agricultural Experiment Station Research Series

Rapid technological changes in crop management and production require that the research efforts be presented in an expeditious manner. The contributions of soil fertility and fertilizers are major production factors in all Arkansas crops. The studies described within will allow producers to compare their practices with the university’s research efforts. Additionally, soil-test data and fertilizer sales are presented to allow comparisons among years, crops, and other areas within Arkansas.

Kentucky Alfalfa Awards History, Kentucky Alfalfa And Stored Forages Conference

Kentucky Alfalfa and Stored Forage Conference

The Kentucky Alfalfa Awards Program was initiated in 2000 at the 20th Anniversary of the Kentucky Alfalfa Conference. The Awards Program is funded annually from revenues generated each year for the Silent Auction during the Annual Conference.

Photo Highlights Of The 36th Kentucky Alfalfa And Stored Forages Conference, Kentucky Alfalfa And Stored Forages Conference

Kentucky Alfalfa and Stored Forage Conference

No abstract provided.

Alfalfa Conference Speakers From The Beginning, Kentucky Alfalfa And Stored Forages Conference

Kentucky Alfalfa and Stored Forage Conference

No abstract provided.

Save The Date! [Announcement], S. Ray Smith, Krista Lea

Kentucky Alfalfa and Stored Forage Conference

This is an announcement of upcoming events.

Selecting Summer Annual Varieties Using Yield And Digestibility, Christopher D. Teutsch

Kentucky Alfalfa and Stored Forage Conference

Although cool-season grasses can provide ample and high quality forage for grazing livestock in the spring and fall, forage growth during the summer months is often restricted by high temperatures (Figure 1). In contrast warm-season annual grasses are most productive during the summer months and do not reach peak growth until temperatures approach 90 degrees Fahrenheit. Summer annual grasses such as forage sorghum (Sorghum bicolor (L.) Moench), sudangrass (Sorghum bicolor (L.) Moench), sorghum-sudangrass hybrids, and pearl millet (Pennisetum americanum (L.) Leeke) can provide high quality summer grazing for ruminant livestock in many regions of the United States.

The Economics Of Hay Quality, Madeline L. Dant, Kenneth H. Burdine, Brandon Sears

Kentucky Alfalfa and Stored Forage Conference

Hay quality is often discussed when one considers the viability of cash hay operations. A great deal is known about how production impacts quality and how quality impacts animal performance. This knowledge certainly has economic implications, but the economics of hay quality has primarily been evaluated from the animal performance perspective. Analyzing the economics of hay quality from the cash hay producer’s prospective becomes more difficult due to data limitations.

There are approximately 2.5 million acres of hay produced in Kentucky annually. The vast majority of this hay is grass type hay that is produced and fed on beef cattle …

What Is New In Seed Coatings, Bill Talley

Kentucky Alfalfa and Stored Forage Conference

Seed Coatings started many centuries ago when the Chinese wrapped their rice seed in a mud ball when planting their rice fields. The ball would keep the seed from floating to the top when they flooded their fields. Seed treatment of Alfalfa first began with preinoculation of the seed to make it more convenient to plant. The farmer did not have to go through the process of inoculating the seed himself, and this was a great improvement at the time. In 1975 Ramsey Seed in California acquired technology from a New Zealand company to begin coating seed with a buildup …

Western Hay Production Vs. Eastern Hay Production, Tom Keene

Kentucky Alfalfa and Stored Forage Conference

Early in the history of mankind, man was nomadic and moved from location to location in order to gather and find sustenance for themselves as well as their livestock. At some point in time, man decided that rather than keep moving, they would establish a community in one location, usually near running water (or fresh water of some kind), and would begin to sustain themselves with production agricultural practices.

Planting and harvesting soon took the place of packing up and moving every time the current resources had been depleted. Each year a new crop would be planted; livestock also became …