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Articles 1 - 24 of 24
Full-Text Articles in Soil Science
Lowland Tropical Forests Remain A Methane Sink Under Warming And Long-Term Hurricane Disturbance Recovery, Gabriele Larocca Conte, Lucia Zuvela, Rachel Cruz-Pérez, Tatiana Barreto-Vélez, Nibia Becerra-Santillan, Sophia F. Campbell, Hieu P. Chu, Trung Dam, Iana F. Grullón-Penkova, Miriam Kleit, Deyaneira A. Ortiz-Iglesias, Laura C. Rubio-Lebrón, Molly A. Cavaleri, Sasha C. Reed, Debjani Sihi, Tana E. Wood, Christine S. O'Connell
Lowland Tropical Forests Remain A Methane Sink Under Warming And Long-Term Hurricane Disturbance Recovery, Gabriele Larocca Conte, Lucia Zuvela, Rachel Cruz-Pérez, Tatiana Barreto-Vélez, Nibia Becerra-Santillan, Sophia F. Campbell, Hieu P. Chu, Trung Dam, Iana F. Grullón-Penkova, Miriam Kleit, Deyaneira A. Ortiz-Iglesias, Laura C. Rubio-Lebrón, Molly A. Cavaleri, Sasha C. Reed, Debjani Sihi, Tana E. Wood, Christine S. O'Connell
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Methane (CH4) is a potent greenhouse gas, and tropical forests account for roughly one–third of global atmospheric CH4 uptake by soils. Projected warming and more frequent hurricanes in these ecosystems may alter soil CH4 sink strength, as warmer and wetter soils enhance methanogenesis activity. We measured soil CH4 and CO2 efflux during the calendar summer months of 2023 and 2024 alongside continuous records of soil moisture, soil and air temperature, and precipitation in an in–situ warming experiment (TRACE) located in a lowland tropical forest in Puerto Rico, six to seven years after Hurricanes Irma …
Warming Climate Amplifies Vapor Pressure Deficit Limits On Gross Primary Productivity, Shiqin Xu, Nate G. Mcdowell, Tim R. Mcvicar, Diego G. Miralles, Stephen Sitch, Pablo Sanchez-Martinez, Joshua B. Fisher, Pierre Friedlingstein, Hylke E. Beck, Matthew F. Mccabe
Warming Climate Amplifies Vapor Pressure Deficit Limits On Gross Primary Productivity, Shiqin Xu, Nate G. Mcdowell, Tim R. Mcvicar, Diego G. Miralles, Stephen Sitch, Pablo Sanchez-Martinez, Joshua B. Fisher, Pierre Friedlingstein, Hylke E. Beck, Matthew F. Mccabe
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Ongoing climate warming may profoundly impact terrestrial gross primary productivity (GPP), a key component of the global carbon cycle. However, uncertainty in the relative roles of atmospheric water demand (vapor pressure deficit, VPD) and root-zone soil moisture (SM) limits predictions of drought impacts on GPP. Here, we show that growing-season GPP was more strongly constrained by VPD than SM globally, based on observation-constrained model estimates, satellite retrievals and Dynamic Global Vegetation Model simulations. The importance of VPD increased with higher temperatures and more severe and prolonged droughts. This pattern reflects VPD’s critical role in regulating stomatal conductance and plant hydraulic …
Warming Induces Unexpectedly High Soil Respiration In A Wet Tropical Forest, Tana E. Wood, Colin Tucker, Aura M. Alonso-Rodríguez, M. Isabel Loza, Iana F. Grullón-Penkova, Molly A. Cavaleri, Christine S. O'Connell, Sasha C. Reed
Warming Induces Unexpectedly High Soil Respiration In A Wet Tropical Forest, Tana E. Wood, Colin Tucker, Aura M. Alonso-Rodríguez, M. Isabel Loza, Iana F. Grullón-Penkova, Molly A. Cavaleri, Christine S. O'Connell, Sasha C. Reed
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Tropical forests are a dominant regulator of the global carbon cycle, exchanging more carbon dioxide with the atmosphere than any other terrestrial biome. Climate models predict unprecedented climatic warming in tropical regions in the coming decades; however, in situ field warming studies are severely lacking in tropical forests. Here we present results from an in situ warming experiment in Puerto Rico, where soil respiration responses to +4 oC warming were assessed half-hourly for a year. Soil respiration rates were 42-204% higher in warmed relative to ambient plots, representing some of the highest soil respiration rates reported for any …
New Precipitation Is Scarce In Deep Soils: Findings From 47 Forest Plots Spanning Switzerland, Emily I. Burt, Scott T. Allen, Sabine Braun, Simon Tresch, James W. Kirchner, Gregory R. Goldsmith
New Precipitation Is Scarce In Deep Soils: Findings From 47 Forest Plots Spanning Switzerland, Emily I. Burt, Scott T. Allen, Sabine Braun, Simon Tresch, James W. Kirchner, Gregory R. Goldsmith
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
As precipitation infiltrates into soils, it can recharge them, displace previously stored waters, or bypass already-filled pores. Using 3,697 δ2H and δ18O measurements of water collected nearly monthly over >3 years in 47 forest plots across Switzerland, we present a systematic investigation of the controls on mobile soil water transport. We quantified the lags and damping of water as it percolates downward using young water fraction analysis (Fyw), and the fractions of soil water composed by precipitation that fell within the previous month (new water fractions, Fnew). The Fnew of water sampled in surface soils ranged …
Remote Sensing-Based Assessment Of Evapotranspiration Patterns In A Unesco World Heritage Site Under Increasing Water Competition, Maria C. Moyano, Monica Garcia, Luis Juana, Laura Recuero, Lucia Tornos, Joshua B. Fisher, Néstor Fernández, Alicia Palacias-Orueta
Remote Sensing-Based Assessment Of Evapotranspiration Patterns In A Unesco World Heritage Site Under Increasing Water Competition, Maria C. Moyano, Monica Garcia, Luis Juana, Laura Recuero, Lucia Tornos, Joshua B. Fisher, Néstor Fernández, Alicia Palacias-Orueta
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
In water-scarce regions, natural ecosystems and agriculture increasingly compete for limited water resources, intensifying stress during periods of drought. To assess these competing demands, we applied a modified PT-JPL model that incorporates the thermal inertial approach as a substitute for relative humidity (RH) in estimating soil evaporation—a method that significantly outperforms the original PT-JPL formulation in Mediterranean semi-arid irrigated areas. This remote sensing framework enabled us to quantify spatial and temporal variations in water use across both natural and agricultural systems within the UNESCO World Heritage site of Doñana. Our analysis revealed an increasing evapotranspiration (ET) trend in intensified agricultural …
Remotely Sensed High-Resolution Soil Moisture And Evapotranspiration: Bridging The Gap Between Science And Society, Jingyi Huang, Vinit Sehgal, Laura V. Alvarez, Luca Brocca, Shuohao Cai, Rui Cheng, Xinghua Cheng, Jinyang Du, Bassil El Masri, K. Arthur Endsley, Yilin Fang, Jie Hu, Mahesh Jampani, Md Golam Kibria, Gerbrand Koren, Lingcheng Li, Laibao Liu, Jiafu Mao, Hernan A. Moreno, Angela Rigden, Mingjie Shi, Xiaoying Shi, Yaoping Wang, Xi Zhang, Joshua B. Fisher
Remotely Sensed High-Resolution Soil Moisture And Evapotranspiration: Bridging The Gap Between Science And Society, Jingyi Huang, Vinit Sehgal, Laura V. Alvarez, Luca Brocca, Shuohao Cai, Rui Cheng, Xinghua Cheng, Jinyang Du, Bassil El Masri, K. Arthur Endsley, Yilin Fang, Jie Hu, Mahesh Jampani, Md Golam Kibria, Gerbrand Koren, Lingcheng Li, Laibao Liu, Jiafu Mao, Hernan A. Moreno, Angela Rigden, Mingjie Shi, Xiaoying Shi, Yaoping Wang, Xi Zhang, Joshua B. Fisher
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
This paper reviews the current state of high-resolution remotely sensed soil moisture (SM) and evapotranspiration (ET) products and modeling, and the coupling relationship between SM and ET. SM downscaling approaches for satellite passive microwave products leverage advances in artificial intelligence and high-resolution remote sensing using visible, near-infrared, thermal-infrared, and synthetic aperture radar sensors. Remotely sensed ET continues to advance in spatiotemporal resolutions from MODIS to ECOSTRESS to Hydrosat and beyond. These advances enable a new understanding of bio-geo-physical controls and coupled feedback mechanisms between SM and ET reflecting the land cover and land use at field scale (3–30 m, daily). …
From The Ground Up: Community-Based Participatory Research Reclaiming The Science Of Lead, Juan Manuel Rubio, Bavisha Kaylan, Anthony Diaz, Patricia Flores, Maya Cheav, David C. Bañuelas, Ashley Green, Annika Hjelmstad, Ariane Jong-Levinger, Tim Schütz, Maya Carrasquillo, Alana M. W. Lebron, Jun Wu
From The Ground Up: Community-Based Participatory Research Reclaiming The Science Of Lead, Juan Manuel Rubio, Bavisha Kaylan, Anthony Diaz, Patricia Flores, Maya Cheav, David C. Bañuelas, Ashley Green, Annika Hjelmstad, Ariane Jong-Levinger, Tim Schütz, Maya Carrasquillo, Alana M. W. Lebron, Jun Wu
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
For decades, the dominant approach to lead poisoning has been to focus on homes affected by lead paint and to treat children who are already suffering from lead poisoning. This individualizing approach developed in the context of the defunding and deregulation of government agencies in the 1980s. In recent years, however, community–academic partnerships have reframed lead as an environmental issue produced by the development of the lead industry in the twentieth century and connected to overlapping histories of exploitation, discrimination, and inaction. These community-based projects have contributed to shifting research agendas (by emphasizing historical analysis and the study of the …
Emerging Sensing, Imaging, And Computational Technologies To Scale Nano-To Macroscale Rhizosphere Dynamics – Review And Research Perspectives, Amir H. Ahkami, Odeta Qafoku, Tiina Roose, Quanbing Mou, Yi Lu, Zoe G. Cardon, Yuxin Wu, Chunwei Chou, Joshua B. Fisher, Tamas Varga, Pubudu Handakumbura, Jayde A. Aufrecht, Arunima Bhattacharjee, James J. Moran
Emerging Sensing, Imaging, And Computational Technologies To Scale Nano-To Macroscale Rhizosphere Dynamics – Review And Research Perspectives, Amir H. Ahkami, Odeta Qafoku, Tiina Roose, Quanbing Mou, Yi Lu, Zoe G. Cardon, Yuxin Wu, Chunwei Chou, Joshua B. Fisher, Tamas Varga, Pubudu Handakumbura, Jayde A. Aufrecht, Arunima Bhattacharjee, James J. Moran
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
The soil region influenced by plant roots, i.e., the rhizosphere, is one of the most complex biological habitats on Earth and significantly impacts global carbon flow and transformation. Understanding the structure and function of the rhizosphere is critically important for maintaining sustainable plant ecosystem services, designing engineered ecosystems for long-term soil carbon storage, and mitigating the effects of climate change. However, studying the biological and ecological processes and interactions in the rhizosphere requires advanced integrated technologies capable of decoding such a complex system at different scales. Here, we review how emerging approaches in sensing, imaging, and computational modeling …
Inhibition Of Chromium(Iii) Oxidation Through Manganese(Iv) Oxide Passivation And Iron(Ii) Abiotic Reduction, Miranda L. Aiken, Macon J. Abernathy, Michael V. Schaefer, Ilkeun Lee, Samantha C. Ying
Inhibition Of Chromium(Iii) Oxidation Through Manganese(Iv) Oxide Passivation And Iron(Ii) Abiotic Reduction, Miranda L. Aiken, Macon J. Abernathy, Michael V. Schaefer, Ilkeun Lee, Samantha C. Ying
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Manganese (Mn) oxides are strong oxidants that are ubiquitous in soils and can oxidize redox-active metals, including chromium (Cr). In soil environments, trivalent chromium (Cr(III)) is a benign, immobile micronutrient, whereas the hexavalent Cr(VI) form is present as a highly mobile, toxic chromate oxyanion. Although many studies have characterized the capacity of Mn(III/IV) oxides to oxidize Cr(III) to toxic Cr(VI), the oxidative capacity of Mn oxides in the presence of potentially passivating soil constituents, specifically reduced soluble iron (Fe(II)aq), remains unresolved. We hypothesized that chemical processes at redox interfaces, such as diffusion-limited environments within soil aggregates, can lead to decreased …
Dinitrogen Emissions Dominate Nitrogen Gas Emissions From Soils With Low Oxygen Availability In A Moist Tropical Forest, Maya Almaraz, Peter M. Groffman, Whendee L. Silver, Steven J. Hall, Yang Lin, Christine S. O'Connell, Stephen Porder
Dinitrogen Emissions Dominate Nitrogen Gas Emissions From Soils With Low Oxygen Availability In A Moist Tropical Forest, Maya Almaraz, Peter M. Groffman, Whendee L. Silver, Steven J. Hall, Yang Lin, Christine S. O'Connell, Stephen Porder
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Lowland tropical forest soils are relatively N rich and are the largest global source of N2O (a powerful greenhouse gas) to the atmosphere. Despite the importance of tropical N cycling, there have been few direct measurements of N2 (an inert gas that can serve as an alternate fate for N2O) in tropical soils, limiting our ability to characterize N budgets, manage soils to reduce N2O production, or predict the future role that N limitation to primary productivity will play in buffering against climate change. We collected soils from across macro- and micro-topographic gradients …
Rapid Bacterial And Fungal Successional Dynamics In First Year After Chaparral Wildfire, M. Fabiola Pulido-Chavez, James W. J. Randolph, Cassandra A. Zalman, Loralee Larios, Peter M. Homyak, Sydney I. Glassman
Rapid Bacterial And Fungal Successional Dynamics In First Year After Chaparral Wildfire, M. Fabiola Pulido-Chavez, James W. J. Randolph, Cassandra A. Zalman, Loralee Larios, Peter M. Homyak, Sydney I. Glassman
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
The rise in wildfire frequency and severity across the globe has increased interest in secondary succession. However, despite the role of soil microbial communities in controlling biogeochemical cycling and their role in the regeneration of post-fire vegetation, the lack of measurements immediately post-fire and at high temporal resolution has limited understanding of microbial secondary succession. To fill this knowledge gap, we sampled soils at 17, 25, 34, 67, 95, 131, 187, 286, and 376 days after a southern California wildfire in fire-adapted chaparral shrublands. We assessed bacterial and fungal biomass with qPCR of 16S and 18S and richness and composition …
Utilizing Novel Field And Data Exploration Methods To Explore Hot Moments In High-Frequency Soil Nitrous Oxide Emissions Data: Opportunities And Challenges, Christine S. O'Connell, Tyler L. Anthony, Melanie A. Mayes, Tibisay Pérez, Debjani Sihi, Whendee L. Silver
Utilizing Novel Field And Data Exploration Methods To Explore Hot Moments In High-Frequency Soil Nitrous Oxide Emissions Data: Opportunities And Challenges, Christine S. O'Connell, Tyler L. Anthony, Melanie A. Mayes, Tibisay Pérez, Debjani Sihi, Whendee L. Silver
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Soil nitrous oxide (N2O) emissions are an important driver of climate change and are a major mechanism of labile nitrogen (N) loss from terrestrial ecosystems. Evidence increasingly suggests that locations on the landscape that experience biogeochemical fluxes disproportionate to the surrounding matrix (hot spots) and time periods that show disproportionately high fluxes relative to the background (hot moments) strongly influence landscape-scale soil N2O emissions. However, substantial uncertainties remain regarding how to measure and model where and when these extreme soil N2O fluxes occur. High-frequency datasets of soil N2O fluxes are newly possible …
Evaluating Alternative Ebullition Models For Predicting Peatland Methane Emission And Its Pathways Via Data–Model Fusion, Shuang Ma, Lifen Jiang, Rachel M. Wilson, Jeff P. Chanton, Scott Bridgham, Shuli Niu, Colleen M. Iversen, Avni Malhotra, Jiang Jiang, Xingjie Lu, Jason Keller, Xiaofeng Xu, Daniel M. Ricciuto, Paul J. Hanson, Yiqi Luo
Evaluating Alternative Ebullition Models For Predicting Peatland Methane Emission And Its Pathways Via Data–Model Fusion, Shuang Ma, Lifen Jiang, Rachel M. Wilson, Jeff P. Chanton, Scott Bridgham, Shuli Niu, Colleen M. Iversen, Avni Malhotra, Jiang Jiang, Xingjie Lu, Jason Keller, Xiaofeng Xu, Daniel M. Ricciuto, Paul J. Hanson, Yiqi Luo
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Understanding the dynamics of peatland methane (CH4) emissions and quantifying sources of uncertainty in estimating peatland CH4 emissions are critical for mitigating climate change. The relative contributions of CH4 emission pathways through ebullition, plant-mediated transport, and diffusion, together with their different transport rates and vulnerability to oxidation, determine the quantity of CH4 to be oxidized before leaving the soil. Notwithstanding their importance, the relative contributions of the emission pathways are highly uncertain. In particular, the ebullition process is more uncertain and can lead to large uncertainties in modeled CH4 emissions. To improve model simulations …
Evaluating Alternative Ebullition Models For Predicting Peatland Methane Emission And Its Pathways Via Data–Model Fusion, Shuang Ma, Lifen Jiang, Rachel M. Wilson, Jeff P. Chanton, Scott Bridgham, Shuli Niu, Colleen M. Iversen, Avni Malhotra, Jiang Jiang, Xingjie Lu, Yuanyuan Huang, Jason Keller, Xiaofeng Xu, Daniel M. Ricciuto, Paul J. Hanson, Yiqi Luo
Evaluating Alternative Ebullition Models For Predicting Peatland Methane Emission And Its Pathways Via Data–Model Fusion, Shuang Ma, Lifen Jiang, Rachel M. Wilson, Jeff P. Chanton, Scott Bridgham, Shuli Niu, Colleen M. Iversen, Avni Malhotra, Jiang Jiang, Xingjie Lu, Yuanyuan Huang, Jason Keller, Xiaofeng Xu, Daniel M. Ricciuto, Paul J. Hanson, Yiqi Luo
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Understanding the dynamics of peatland methane (CH4) emissions and quantifying sources of uncertainty in estimating peatland CH4 emissions are critical for mitigating climate change. The relative contributions of CH4 emission pathways through ebullition, plant-mediated transport, and diffusion, together with their different transport rates and vulnerability to oxidation, determine the quantity of CH4 to be oxidized before leaving the soil. Notwithstanding their importance, the relative contributions of the emission pathways are highly uncertain. In particular, the ebullition process is more uncertain and can lead to large uncertainties in modeled CH4 emissions. To improve model simulations of CH4 emission and its pathways, …
Modeling Nitrous Oxide Emissions From Large-Scale Intensive Cropping Systems In The Southern Amazon, Ciniro Costa Jr., Gillian L. Galford, Michael T. Coe, Marcia Macedo, Kathijo Jankowski, Christine S. O'Connell, Christopher Neill
Modeling Nitrous Oxide Emissions From Large-Scale Intensive Cropping Systems In The Southern Amazon, Ciniro Costa Jr., Gillian L. Galford, Michael T. Coe, Marcia Macedo, Kathijo Jankowski, Christine S. O'Connell, Christopher Neill
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Nitrogen (N) fertilizer use is rapidly intensifying on tropical croplands and has the potential to increase emissions of the greenhouse gas, nitrous oxide (N2O). Since about 2005 Mato Grosso (MT), Brazil has shifted from single-cropped soybeans to double-cropping soybeans with maize, and now produces 1.5% of the world's maize. This production shift required an increase in N fertilization, but the effects on N2O emissions are poorly known. We calibrated the process-oriented biogeochemical DeNitrification-DeComposition (DNDC) model to simulate N2O emissions and crop production from soybean and soybean-maize cropping systems in MT. After model validation with …
An Integrative Model For Soil Biogeochemistry And Methane Processes: I. Model Structure And Sensitivity Analysis, Daniel M. Ricciuto, Xiaofeng Xu, Xiaoying Shi, Yihui Wang, Xia Song, Christopher W. Schadt, Natalie A. Griffiths, Jiafu Mao, Jeffrey M. Warren, Peter E. Thornton, Jeff Chanton, Jason K. Keller, Scott D. Bridgham, Jessica Gutknecht, Stephen D. Sebestyen, Adrien Finzi, Randall Kolka, Paul J. Hanson
An Integrative Model For Soil Biogeochemistry And Methane Processes: I. Model Structure And Sensitivity Analysis, Daniel M. Ricciuto, Xiaofeng Xu, Xiaoying Shi, Yihui Wang, Xia Song, Christopher W. Schadt, Natalie A. Griffiths, Jiafu Mao, Jeffrey M. Warren, Peter E. Thornton, Jeff Chanton, Jason K. Keller, Scott D. Bridgham, Jessica Gutknecht, Stephen D. Sebestyen, Adrien Finzi, Randall Kolka, Paul J. Hanson
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Environmental changes are anticipated to generate substantial impacts on carbon cycling in peatlands, affecting terrestrial-climate feedbacks. Understanding how peatland methane (CH4) fluxes respond to these changing environments is critical for predicting the magnitude of feedbacks from peatlands to global climate change. To improve predictions of CH4 fluxes in response to changes such as elevated atmospheric CO2 concentrations and warming, it is essential for Earth system models to include increased realism to simulate CH4 processes in a more mechanistic way. To address this need, we incorporated a new microbial-functional group-based CH4 module into the Energy …
Representing Methane Emissions From Wet Tropical Forest Soils Using Microbial Functional Groups Constrained By Soil Diffusivity, Debjani Sihi, Xiaofeng Xu, Mónica Salazar Ortiz, Christine S. O'Connell, Whendee L. Silver, Carla López-Lloreda, Julia M. Brenner, Ryan K. Quinn, Jana R. Phillips, Brent D. Newman, Melanie A. Mayes
Representing Methane Emissions From Wet Tropical Forest Soils Using Microbial Functional Groups Constrained By Soil Diffusivity, Debjani Sihi, Xiaofeng Xu, Mónica Salazar Ortiz, Christine S. O'Connell, Whendee L. Silver, Carla López-Lloreda, Julia M. Brenner, Ryan K. Quinn, Jana R. Phillips, Brent D. Newman, Melanie A. Mayes
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Tropical ecosystems contribute significantly to global emissions of methane (CH4), and landscape topography influences the rate of CH4 emissions from wet tropical forest soils. However, extreme events such as drought can alter normal topographic patterns of emissions. Here we explain the dynamics of CH4 emissions during normal and drought conditions across a catena in the Luquillo Experimental Forest, Puerto Rico. Valley soils served as the major source of CH4 emissions in a normal precipitation year (2016), but drought recovery in 2015 resulted in dramatic pulses in CH4 emissions from all topographic positions. Geochemical parameters …
Cosore: A Community Database For Continuous Soil Respiration And Other Soil-Atmosphere Greenhouse Gas Flux Data, Ben Bond-Lamberty, Danielle S. Christianson, Avni Malhotra, Stephanie C. Pennington, Debjani Sihi, Amir Aghakouchak, Hassan Anjileli, M. Altaf Arain, Juan J. Armesto, Samaneh Ashraf, Mioko Ataka, Dennis Baldocchi, Thomas Andrew Black, Nina Buchmann, Mariah S. Carbone, Shih-Chieh Chang, Patrick Crill, Peter S. Curtis, Eric A. Davidson, Ankur R. Desai, John E. Drake, Tarek S. El-Madany, Michael Gavazzi, Carolyn-Monika Görres, Christopher M. Gough, Michael Goulden, Jillian Gregg, Omar Gutiérrez Del Arroyo, Jin-Sheng He, Takashi Hirano, Anya Hopple, Holly Hughes, Järvi Järveoja, Rachhpal Jassal, Jinshi Jian, Haiming Kan, Jason Kaye, Yuji Kominami, Naishen Liang, David Lipson, Catriona A. Macdonald, Kadmiel Maseyk, Kayla Mathes, Marguerite Mauritz, Melanie A. Mayes, Steve Mcnulty, Guofang Miao, Mirco Migliavacca, Scott Miller, Chelcy F. Miniat, Jennifer G. Nietz, Mats B. Nilsson, Asko Noormets, Hamidreza Norouzi, Christine S. O'Connell, Bruce Osborne, Cecilio Oyonarte, Zhuo Pang, Matthias Peichl, Elise Pendall, Jorge F. Perez-Quezada, Claire L. Phillips, Richard P. Phillips, James W. Raich, Alexandre A. Renchon, Nadine K. Ruehr, Enrique P. Sánchez-Cañete, Matthew Saunders, Kathleen E. Savage, Marion Schrumpf, Russell L. Scott, Ulli Seibt, Whendee L. Silver, Wu Sun, Daphne Szutu, Kentaro Takagi, Masahiro Takagi, Munemasa Teramoto, Mark G. Tjoelker, Susan Trumbore, Masahito Ueyama, Rodrigo Vargas, Ruth K. Varner, Joseph Verfaillie, Christoph Vogel, Jinsong Wang, Greg Winston, Tana E. Wood, Juying Wu, Thomas Wutzler, Jiye Zeng, Tianshan Zha, Quan Zhang, Junliang Zou
Cosore: A Community Database For Continuous Soil Respiration And Other Soil-Atmosphere Greenhouse Gas Flux Data, Ben Bond-Lamberty, Danielle S. Christianson, Avni Malhotra, Stephanie C. Pennington, Debjani Sihi, Amir Aghakouchak, Hassan Anjileli, M. Altaf Arain, Juan J. Armesto, Samaneh Ashraf, Mioko Ataka, Dennis Baldocchi, Thomas Andrew Black, Nina Buchmann, Mariah S. Carbone, Shih-Chieh Chang, Patrick Crill, Peter S. Curtis, Eric A. Davidson, Ankur R. Desai, John E. Drake, Tarek S. El-Madany, Michael Gavazzi, Carolyn-Monika Görres, Christopher M. Gough, Michael Goulden, Jillian Gregg, Omar Gutiérrez Del Arroyo, Jin-Sheng He, Takashi Hirano, Anya Hopple, Holly Hughes, Järvi Järveoja, Rachhpal Jassal, Jinshi Jian, Haiming Kan, Jason Kaye, Yuji Kominami, Naishen Liang, David Lipson, Catriona A. Macdonald, Kadmiel Maseyk, Kayla Mathes, Marguerite Mauritz, Melanie A. Mayes, Steve Mcnulty, Guofang Miao, Mirco Migliavacca, Scott Miller, Chelcy F. Miniat, Jennifer G. Nietz, Mats B. Nilsson, Asko Noormets, Hamidreza Norouzi, Christine S. O'Connell, Bruce Osborne, Cecilio Oyonarte, Zhuo Pang, Matthias Peichl, Elise Pendall, Jorge F. Perez-Quezada, Claire L. Phillips, Richard P. Phillips, James W. Raich, Alexandre A. Renchon, Nadine K. Ruehr, Enrique P. Sánchez-Cañete, Matthew Saunders, Kathleen E. Savage, Marion Schrumpf, Russell L. Scott, Ulli Seibt, Whendee L. Silver, Wu Sun, Daphne Szutu, Kentaro Takagi, Masahiro Takagi, Munemasa Teramoto, Mark G. Tjoelker, Susan Trumbore, Masahito Ueyama, Rodrigo Vargas, Ruth K. Varner, Joseph Verfaillie, Christoph Vogel, Jinsong Wang, Greg Winston, Tana E. Wood, Juying Wu, Thomas Wutzler, Jiye Zeng, Tianshan Zha, Quan Zhang, Junliang Zou
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil-to-atmosphere CO2 flux, commonly though imprecisely termed soil respiration (RS), is one of the largest carbon fluxes in the Earth system. An increasing number of high-frequency RS measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; an increasing number of methane measurements are being made with such systems …
Anoxic Conditions Maintained High Phosphorus Sorption In Humid Tropical Forest Soils, Yang Lin, Avner Gross, Christine S. O'Connell, Whendee L. Silver
Anoxic Conditions Maintained High Phosphorus Sorption In Humid Tropical Forest Soils, Yang Lin, Avner Gross, Christine S. O'Connell, Whendee L. Silver
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
The strong phosphorus (P) sorption capacity of iron (Fe) and aluminum (Al) minerals in highly weathered, acidic soils of humid tropical forests is generally assumed to be an important driver of P limitation to plants and microbial activity in these ecosystems. Humid tropical forest soils often experience fluctuating redox conditions that reduce Fe and raise pH. It is commonly thought that Fe reduction generally decreases the capacity and strength of P sorption. Here we examined the effects of 14 d oxic and anoxic incubations on soil P sorption dynamics in humid tropical forest soils from Puerto Rico. Contrary to the …
Seasonal Origins Of Soil Water Used By Trees, Scott T. Allen, James W. Kirchner, Sabine Braun, Rolf T. W. Siegwolf, Gregory R. Goldsmith
Seasonal Origins Of Soil Water Used By Trees, Scott T. Allen, James W. Kirchner, Sabine Braun, Rolf T. W. Siegwolf, Gregory R. Goldsmith
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Rain recharges soil water storages and either percolates downward into aquifers and streams or is returned to the atmosphere through evapotranspiration. Although it is commonly assumed that summer rainfall recharges plant-available water during the growing season, the seasonal origins of water used by plants have not been systematically explored. We characterize the seasonal origins of waters in soils and trees by comparing their midsummer isotopic signatures (δ2H) to seasonal isotopic cycles in precipitation, using a new seasonal origin index. Across 182 Swiss forest sites, xylem water isotopic signatures show that summer rain was not the predominant water source …
Spatial Variation In Throughfall, Soil, And Plant Water Isotopes In A Temperate Forest, Gregory R. Goldsmith, Scott T. Allen, Sabine Braun, Nadine Engbersen, Clara Romero González-Quijano, James W. Kirchner, Rolf T. W. Siegwolf
Spatial Variation In Throughfall, Soil, And Plant Water Isotopes In A Temperate Forest, Gregory R. Goldsmith, Scott T. Allen, Sabine Braun, Nadine Engbersen, Clara Romero González-Quijano, James W. Kirchner, Rolf T. W. Siegwolf
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Studies of stable isotopes of water in the environment have been fundamental to advancing our understanding of how water moves through the soil‐plant‐atmosphere continuum; however, much of this research focuses on how water isotopes vary in time, rather than in space. We examined the spatial variation in the δ18O and δ2H of throughfall and bulk soil water, as well as branch xylem and bulk leaf water of Picea abies (Norway Spruce) and Fagus sylvatica (Beech), in a 1 ha forest plot in the northern Alps of Switzerland. Means and ranges of water isotope ratios varied considerably …
Hot Spots And Hot Moments Of Soil Moisture Explain Fluctuations In Iron And Carbon Cycling In A Humid Tropical Forest Soil, Diego Barcellos, Christine S. O'Connell, Whendee L. Silver, Christof Meile, Aaron Thompson
Hot Spots And Hot Moments Of Soil Moisture Explain Fluctuations In Iron And Carbon Cycling In A Humid Tropical Forest Soil, Diego Barcellos, Christine S. O'Connell, Whendee L. Silver, Christof Meile, Aaron Thompson
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Soils from humid forests undergo spatial and temporal variations in moisture and oxygen (O2) in response to rainfall, and induce changes in iron (Fe) and carbon (C) biogeochemistry. We hypothesized that high rainfall periods stimulate Fe and C cycling, with the greatest effects in areas of high soil moisture. To test this, we measured Fe and C cycling across three catenas at valley, slope, and ridge positions every two days for a two-month period in a rainforest in Puerto Rico. Over 12 days without rain, soil moisture, FeII, rapidly reducible Fe oxides (FeIIIRR), …
Drought Drives Rapid Shifts In Tropical Rainforest Soil Biogeochemistry And Greenhouse Gas Emissions, Christine S. O'Connell, Leilei Ruan, Whendee L. Silver
Drought Drives Rapid Shifts In Tropical Rainforest Soil Biogeochemistry And Greenhouse Gas Emissions, Christine S. O'Connell, Leilei Ruan, Whendee L. Silver
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Climate change models predict more frequent and severe droughts in the humid tropics. How drought will impact tropical forest carbon and greenhouse gas dynamics is poorly understood. Here we report the effects of the severe 2015 Caribbean drought on soil moisture, oxygen, phosphorus (P), and greenhouse gas emissions in a humid tropical forest in Puerto Rico. Drought significantly decreases inorganic P concentrations, an element commonly limiting to net primary productivity in tropical forests, and significantly increases organic P. High-frequency greenhouse gas measurements show varied impacts across topography. Soil carbon dioxide emissions increase by 60% on slopes and 163% in valleys. …
Automating Data Analysis For Two-Dimensional Gas Chromatography/Time-Of-Flight Mass Spectrometry Non-Targeted Analysis Of Comparative Samples, Ivan A. Titaley, O. Maduka Ogba, Leah Chibwe, Eunha Hoh, Paul H.-Y. Cheong, Staci L. Massey Simonich
Automating Data Analysis For Two-Dimensional Gas Chromatography/Time-Of-Flight Mass Spectrometry Non-Targeted Analysis Of Comparative Samples, Ivan A. Titaley, O. Maduka Ogba, Leah Chibwe, Eunha Hoh, Paul H.-Y. Cheong, Staci L. Massey Simonich
Biology, Chemistry, and Environmental Sciences Faculty Articles and Research
Non-targeted analysis of environmental samples, using comprehensive two‐dimensional gas chromatography coupled with time-of-flight mass spectrometry (GC × GC/ToF-MS), poses significant data analysis challenges due to the large number of possible analytes. Non-targeted data analysis of complex mixtures is prone to human bias and is laborious, particularly for comparative environmental samples such as contaminated soil pre- and post-bioremediation. To address this research bottleneck, we developed OCTpy, a Python™ script that acts as a data reduction filter to automate GC × GC/ToF-MS data analysis from LECO® ChromaTOF® software and facilitates selection of analytes of interest based on peak area …