Physical Sciences and Mathematics Commons^™

Estimation And Variable Selection In High-Dimensional Settings With Mismeasured Observations, Michael Byrd

Statistical Science Theses and Dissertations

Understanding high-dimensional data has become essential for practitioners across many disciplines. The general increase in ability to collect large amounts of data has prompted statistical methods to adapt for the rising number of possible relationships to be uncovered. The key to this adaptation has been the notion of sparse models, or, rather, models where most relationships between variables are assumed to be negligible at best. Driving these sparse models have been constraints on the solution set, yielding regularization penalties imposed on the optimization procedure. While these penalties have found great success, they are typically formulated with strong assumptions on the …

Modeling Stochastically Intransitive Relationships In Paired Comparison Data, Ryan Patrick Alexander Mcshane

Statistical Science Theses and Dissertations

If the Warriors beat the Rockets and the Rockets beat the Spurs, does that mean that the Warriors are better than the Spurs? Sophisticated fans would argue that the Warriors are better by the transitive property, but could Spurs fans make a legitimate argument that their team is better despite this chain of evidence?

We first explore the nature of intransitive (rock-scissors-paper) relationships with a graph theoretic approach to the method of paired comparisons framework popularized by Kendall and Smith (1940). Then, we focus on the setting where all pairs of items, teams, players, or objects have been compared to …

Bayesian Hierarchical Meta-Analysis Of Asymptomatic Ebola Seroprevalence, Peter Brody-Moore

CMC Senior Theses

The continued study of asymptomatic Ebolavirus infection is necessary to develop a more complete understanding of Ebola transmission dynamics. This paper conducts a meta-analysis of eight studies that measure seroprevalence (the number of subjects that test positive for anti-Ebolavirus antibodies in their blood) in subjects with household exposure or known case-contact with Ebola, but that have shown no symptoms. In our two random effects Bayesian hierarchical models, we find estimated seroprevalences of 8.76% and 9.72%, significantly higher than the 3.3% found by a previous meta-analysis of these eight studies. We also produce a variation of this meta-analysis where we exclude …

Utilizing Multi-Level Classification Techniques To Predict Adverse Drug Effects And Reactions, Victoria Puhl

Undergraduate Honors Thesis Collection

Multi-class classification models are used to predict categorical response variables with more than two possible outcomes. A collection of multi-class classification techniques such as Multinomial Logistic Regression, Na\"{i}ve Bayes, and Support Vector Machine is used in predicting patients’ drug reactions and adverse drug effects based on patients’ demographic and drug administration. The newly released 2018 data on drug reactions and adverse drug effects from U.S. Food and Drug Administration are tested with the models. The applicability of model evaluation measures such as sensitivity, specificity and prediction accuracy in multi-class settings, are also discussed.

Basketball Charts, Kevin Lewis

Williams Honors College, Honors Research Projects

The purpose of this project was to develop an interactive web application with access to a self-updating database of basketball statistics. This data would then be used to allow users to generate informative visuals about specific sets of players. Obtaining statistics from the National Basketball Association (NBA) for the 2018-19 season was the original target goal. By utilizing an open source and community driven API, this goal was successfully achieved. With the data in place, the development of the chart building tool that was intended to be the primary functionality of the web application could begin. Highcharts was used as …

Reporting Number Needed To Treat In Clinical Trials Published In Physical Therapy Specific Literature 1989 - 2018, Susan Ann Talley

Wayne State University Dissertations

Evidence-based practice requires physical therapists to make clinical decisions about the best intervention to use when providing services to patients/clients. Although null hypothesis significance testing (NHST) is frequently used to interpret the outcome of a clinical trial investigating the comparative effectiveness of an intervention, statistical significance does not directly translate into clinical importance. Number needed to treat (NNT) is a measure of effect size (ES) that may be particularly useful when translating the results from clinical trials to PT clinical practice. The purpose of this study was to conduct a bibliometric content analysis of the methods of reporting research results …

A Self-Contained Course In The Mathematical Theory Of Statistics For Scientists & Engineers With An Emphasis On Predictive Regression Modeling & Financial Applications., Tim Smith

Open Access Textbooks

Preface & Acknowledgments

This textbook is designed for a higher level undergraduate, perhaps even first year graduate, course for engineering or science students who are interested to gain knowledge of using data analysis to make predictive models. While there is no statistical perquisite knowledge required to read this book, due to the fact that the study is designed for the reader to truly understand the underlying theory rather than just learn how to read computer output, it would be best read with some familiarity of elementary statistics. The book is self-contained and the only true perquisite knowledge is a solid …

The Effect Of Using A Project-Based Learning (Pbl) Approach To Improve Engineering Students' Understanding Of Statistics, Fionnuala Farrell, Michael Carr

Articles

Over the last number of years we have gradually been introducing a project based learning approach to the teaching of engineering mathematics inDublin Institute of Technology. Several projects are now in existence for the teaching of both second-order differential equations and first order differential equations.We intend to incrementally extend this approach acrossmore of the engineering mathematics curriculum. As part of this ongoing process, practical realworld projects in statistics were incorporated into a second year ordinary degree mathematics module. This paper provides an overview of these projects and their implementation. As a means to measure the success of this initiative, we …

Conceptualizing And Interpreting Mean And Median With Future Teachers, Eryn Stehr Maher, Ha Nguyen, Gregory Chamblee, Sharon Taylor

Mathematical Sciences: Faculty Publications

Mathematical Education of Teachers II (METII), echoed by the American Statistical Association publication, Statistical Education of Teachers, recommended teacher preparation programs support future teachers in developing deep understandings of mean and median, such that middle grades teachers may use them to “summarize, describe, and compare distributions” (Conference Board of Mathematical Sciences, 2012, p. 44; Franklin et al., 2015). Georgia Standards of Excellence require statistical reasoning from students beginning as early as 6-7 years old, including interpretation of measures of center and statistical reasoning about best measures of center (Georgia Department of Education, 2015). This level of understanding and interpretation of …

Conceptualizing And Interpreting Mean And Median With Future Teachers, Eryn M. Stehr, Ha Nguyen, Gregory Chamblee, Sharon Taylor

Proceedings of the Annual Meeting of the Georgia Association of Mathematics Teacher Educators

Mathematical Education of Teachers II (METII), echoed by the American Statistical Association publication, Statistical Education of Teachers, recommended teacher preparation programs support future teachers in developing deep understandings of mean and median, such that middle grades teachers may use them to “summarize, describe, and compare distributions” (Conference Board of Mathematical Sciences, 2012, p. 44; Franklin et al., 2015). Georgia Standards of Excellence require statistical reasoning from students beginning as early as 6-7 years old, including interpretation of measures of center and statistical reasoning about best measures of center (Georgia Department of Education, 2015). This level of understanding and interpretation of …

Toward Collaborative Open Data Science In Metabolomics Using Jupyter Notebooks And Cloud Computing, Kevin M. Mendez, Leighton Pritchard, Stacey N. Reinke, David I. Broadhurst

Research outputs 2014 to 2021

Background

A lack of transparency and reporting standards in the scientific community has led to increasing and widespread concerns relating to reproduction and integrity of results. As an omics science, which generates vast amounts of data and relies heavily on data science for deriving biological meaning, metabolomics is highly vulnerable to irreproducibility. The metabolomics community has made substantial efforts to align with FAIR data standards by promoting open data formats, data repositories, online spectral libraries, and metabolite databases. Open data analysis platforms also exist; however, they tend to be inflexible and rely on the user to adequately report their methods …

Optical Vortex And Poincaré Analysis For Biophysical Dynamics, Anindya Majumdar

Dissertations, Master's Theses and Master's Reports

Coherent light - such as that from a laser - on interaction with biological tissues, undergoes scattering. This scattered light undergoes interference and the resultant field has randomly added phases and amplitudes. This random interference pattern is known as speckles, and has been the subject of multiple applications, including imaging techniques. These speckle fields inherently contain optical vortices, or phase singularities. These are locations where the intensity (or amplitude) of the interference pattern is zero, and the phase is undefined.

In the research presented in this dissertation, dynamic speckle patterns were obtained through computer simulations as well as laboratory setups …

Re-Describing Surface Roughness, Vincent Wagner

Essential Studies UNDergraduate Showcase

The purpose of this project is to explore a non-traditional method of identifying and describing variance in data. The original goal was to provide a more useful description of surface roughness for use in calculating pressure loss due to pipe friction in the oil and gas industry. This approach uses simple trigonometric calculations to capture more information about the point to point variance of a given data set, as well as information related to the ratio of measured length vs total contact length. This method utilizes steps similar to the bootstrap method in statistics, however, rather than sampling a data …

Rfviz: An Interactive Visualization Package For Random Forests In R, Christopher Beckett

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Random forests are very popular tools for predictive analysis and data science. They work for both classification (where there is a categorical response variable) and regression (where the response is continuous). Random forests provide proximities, and both local and global measures of variable importance. However, these quantities require special tools to be effectively used to interpret the forest. Rfviz is a sophisticated interactive visualization package and toolkit in R, specially designed for interpreting the results of a random forest in a user-friendly way. Rfviz uses a recently developed R package (loon) from the Comprehensive R Archive Network (CRAN) to create …

Comparing Performance Of Gene Set Test Methods Using Biologically Relevant Simulated Data, Richard M. Lambert

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Today we know that there are many genetically driven diseases and health conditions. These problems often manifest only when a set of genes are either active or inactive. Recent technology allows us to measure the activity level of genes in cells, which we call gene expression. It is of great interest to society to be able to statistically compare the gene expression of a large number of genes between two or more groups. For example, we may want to compare the gene expression of a group of cancer patients with a group of non-cancer patients to better understand the genetic …

Using Machine Learning To Accurately Predict Ambient Soundscapes From Limited Data Sets, Katrina Lynn Pedersen

Theses and Dissertations

The ability to accurately characterize the soundscape, or combination of sounds, of diverse geographic areas has many practical implications. Interested parties include the United States military and the National Park Service, but applications also exist in areas such as public health, ecology, community and social justice noise analyses, and real estate. I use an ensemble of machine learning models to predict ambient sound levels throughout the contiguous United States. Our data set consists of 607 training sites, where various acoustic metrics, such as overall daytime L50 levels and one-third octave frequency band levels, have been obtained. I have data for …

Seeing And Understanding Data, Beverly Wood, Charlotte Bolch

Statistics and Probability

No abstract provided.

Elementary Statistics (Ghc), Camille Pace, Katie Bridges, Laura Ralston, Elizabeth Clark, Brent Griffin, Kamisha Decoudreaux, Zac Johnston, Vincent Manatsa

Mathematics Grants Collections

This Grants Collection for Elementary Statistics was created under a Round Eleven ALG Textbook Transformation Grant.

Affordable Learning Georgia Grants Collections are intended to provide faculty with the frameworks to quickly implement or revise the same materials as a Textbook Transformation Grants team, along with the aims and lessons learned from project teams during the implementation process.

Documents are in .pdf format, with a separate .docx (Word) version available for download. Each collection contains the following materials:

• Linked Syllabus
• Initial Proposal
• Final Report

Statistics (Abac), April Abbott, Gary Dicks, Jan Gregus, Buddhi Pantha, Melanie Partlow, Lori Pearman, Amanda Urquhart, Eunkyung You

Mathematics Grants Collections

This Grants Collection for Statistics was created under a Round Ten ALG Textbook Transformation Grant.

Affordable Learning Georgia Grants Collections are intended to provide faculty with the frameworks to quickly implement or revise the same materials as a Textbook Transformation Grants team, along with the aims and lessons learned from project teams during the implementation process.

Documents are in .pdf format, with a separate .docx (Word) version available for download. Each collection contains the following materials:

• Linked Syllabus
• Initial Proposal
• Final Report

Statistical Design Of Experiment Techniques In Manufacturing, Caroline M. Kerfonta

Senior Theses

There are many statistical techniques used to design experiments. These techniques are used in many different fields. This thesis will focus on the use of the three most common techniques used to design statistical experiments in manufacturing.

The three techniques that will be investigated are completely randomized design, randomized block design, and factorial design. These techniques will be compared, contrasted, and explained. Research examples will be presented along with sample R code for each technique. These examples will be accompanied by analysis of the techniques as well as an overview of the uses and history of experiments in manufacturing

Minimizing The Perceived Financial Burden Due To Cancer, Hassan Azhar, Zoheb Allam, Gino Varghese, Daniel W. Engels, Sajiny John

SMU Data Science Review

In this paper, we present a regression model that predicts perceived financial burden that a cancer patient experiences in the treatment and management of the disease. Cancer patients do not fully understand the burden associated with the cost of cancer, and their lack of understanding can increase the difficulties associated with living with the disease, in particular coping with the cost. The relationship between demographic characteristics and financial burden were examined in order to better understand the characteristics of a cancer patient and their burden, while all subsets regression was used to determine the best predictors of financial burden. Age, …

Secondary Data Analysis Project, Jonathan M. Gallimore

SF 420 PR - Gallimore - Fall 2018

This activity is designed to give students an opportunity to apply what they have learned in statistics to a real dataset.

This activity will help students apply what they have learned in statistics to real world data and answer their own research questions. Students will also practice reporting their results in a paper using APA format.

Deep Machine Learning For Mechanical Performance And Failure Prediction, Elijah Reber, Nickolas D. Winovich, Guang Lin

The Summer Undergraduate Research Fellowship (SURF) Symposium

Deep learning has provided opportunities for advancement in many fields. One such opportunity is being able to accurately predict real world events. Ensuring proper motor function and being able to predict energy output is a valuable asset for owners of wind turbines. In this paper, we look at how effective a deep neural network is at predicting the failure or energy output of a wind turbine. A data set was obtained that contained sensor data from 17 wind turbines over 13 months, measuring numerous variables, such as spindle speed and blade position and whether or not the wind turbine experienced …

Adapting To Sparsity And Heavy Tailed Data, Mohamed Abdelkader Abba

Graduate Theses and Dissertations

The Lasso and the Horseshoe, gold-standards in the frequentist and Bayesian paradigms, critically depend on learning the error variance. This causes a lack of scale invariance and adaptability to heavy-tailed data. The √ Lasso [Belloni et al., 2011] attempt to correct this by using the `1 norm on both the likelihood and the penalty for the objective function. In contrast, there is essentially no methods for uncertainty quantification or automatic parameter tuning via a formal Bayesian treatment of an unknown error distribution. On the other hand, Bayesian shrinkage priors lacking a local shrinkage term fails to adapt to the large …

Bayesian Analytical Approaches For Metabolomics : A Novel Method For Molecular Structure-Informed Metabolite Interaction Modeling, A Novel Diagnostic Model For Differentiating Myocardial Infarction Type, And Approaches For Compound Identification Given Mass Spectrometry Data., Patrick J. Trainor

Electronic Theses and Dissertations

Metabolomics, the study of small molecules in biological systems, has enjoyed great success in enabling researchers to examine disease-associated metabolic dysregulation and has been utilized for the discovery biomarkers of disease and phenotypic states. In spite of recent technological advances in the analytical platforms utilized in metabolomics and the proliferation of tools for the analysis of metabolomics data, significant challenges in metabolomics data analyses remain. In this dissertation, we present three of these challenges and Bayesian methodological solutions for each. In the first part we develop a new methodology to serve a basis for making higher order inferences in metabolomics, …

Implementing The Use Of Personal Activity Data In An Introductory Statistics Course, Lacy Christensen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Integrating real data into a classroom is one of the recommendations in the Guidelines for Assessment and Instruction in Statistics Education (GAISE) college report which lays out guidelines for an introductory statistics course (Committee, GAISE College Report ASA Revision, 2016). In order to assess the effect of using real data in a classroom, the students received physical activity trackers to wear during an undergraduate introductory statistics course taught in the summer. This tracker, a Fitbit, enabled students to monitor and record their steps, calories, and active time throughout the class. Collecting personal activity data (PAD) creates a large database which …

Calculus Of The Impossible: Review Of The Improbability Principle (2014) By David Hand And The Logic Of Miracles (2018) By Lásló Mérő, Samuel L. Tunstall

Numeracy

David J. Hand. 2014. The Improbability Principle: Why Coincidences, Miracles, and Rare Events Happen Every Day (New York, NY: Scientific American/Farrar, Straus and Giroux) 288 pp. ISBN: 978-0374175344.

Lásló Mérő. 2018. The Logic of Miracles: Making Sense of Rare, Really Rare, and Impossibly Rare Events (New Haven, CT: Yale University Press) 288 pp. ISBN: 978-0300224153.

David Hand and Lásló Mérő both grapple with the occurrence of seemingly impossible events in these two popular science books. In this comparative review, I describe the two books, and explain why I prefer Hand's treatment of the impossible.

On The Detection Of Statistical Heterogeneity In Rain Measurements, A. R. Jameson, Michael L. Larsen, A. Kostinski

Department of Physics Publications

The application of the Wiener–Khintchine theorem for translating a readily measured correlation function into the variance spectrum, important for scale analyses and for scaling transformations of data, requires that the data be wide-sense homogeneous (stationary), that is, that the first and second moments of the probability distribution of the variable are the same at all times (stationarity) or at all locations (homogeneity) over the entire observed domain. This work provides a heuristic method independent of statistical models for evaluating whether a set of data in rain is wide-sense stationary (WSS). The alternative, statistical heterogeneity, requires 1) that there be no …

Association Tests For Genetic Effect And Its Interaction With Environmental Factors, Zhengyang Zhou

Statistical Science Theses and Dissertations

My research is in the area of statistical genetics, and it contains three projects: (1) Differentiating the Cochran-Armitage (CA) trend test and Pearson’s chi-square test: location and dispersion; (2) Decomposing Pearson’s chi-square test: a linear regression and its departure from linearity; (3) Testing nonlinear gene-environment (GxE) interaction through varying coefficient and linear mixed models.

(1) In genetic case-control association studies, a standard practice is to perform the CA trend test with 1 degree-of-freedom (df) under the assumption of an additive model. However, when the true genetic model is recessive or near recessive, it is outperformed by Pearson’s chi-square test with …

Hierarchical Bayesian Data Fusion Using Autoencoders, Yevgeniy Vladimirovich Reznichenko

Master's Theses (2009 -)

In this thesis, a novel method for tracker fusion is proposed and evaluated for vision-based tracking. This work combines three distinct popular techniques into a recursive Bayesian estimation algorithm. First, semi supervised learning approaches are used to partition data and to train a deep neural network that is capable of capturing normal visual tracking operation and is able to detect anomalous data. We compare various methods by examining their respective receiver operating conditions (ROC) curves, which represent the trade off between specificity and sensitivity for various detection threshold levels. Next, we incorporate the trained neural networks into an existing data …