Physical Sciences and Mathematics Commons^™

Automated Tree Mortality Detection Using Ubiquitously Available Public Data, Michael T. Huggins

Master's Theses

Understanding the dynamic interplay between fire severity, topography, and tree mortality, is crucial for predicting future forest dynamics and enhancing resilience against climate change-induced wildfire regimes. This thesis develops a multi-sensor approach for automated estimation of tree mortality, then applies it to examine trends in tree mortality over a six-year period across a fire affected study site in the Trinity River basin in Northern California. The Random Forest model uses publicly available USGS 3D Elevation Program Lidar (3DEP) and NAIP imagery as inputs and is likely to be easily adaptable to other landscapes. The model had a Receiver Operating Characteristic …

A Novel Technique To Label Cover Crop Biomass Using Stable Isotopes, L. M. D. Queiroz, José C. B. Dubeux Jr., Lynn E. Sollenberger, M. Wallau, D. R. S. Loures, M. A. Bernardini, I. L. Bretas, S. F. Novo, K. R. Trumpp, K. T. Oduor, J. D. Pereira Neto, M. Ruiz-Moreno

IGC Proceedings (1997-2023)

Stable isotopes can be used as tracers for carbon and nitrogen pathways being a great tool to track nutrients in integrated systems. The objective of this experiment was to understand the partitioning of 15N and 13C within cover crop plants when they were labeled with stable isotopes, using chambers under field conditions. Cover crops were planted at the University of Florida, North Florida Research and Education Center-Marianna, located in Marianna, FL. Treatments were four cover crops, in which one was considered a typical cover crop system and the other three consisted of an integrated crop-livestock system with or without the …

Potentially Massive And Global Non-Pyrogenic Production Of Condensed "Black" Carbon Through Biomass Oxidation, Aleksandar I. Goranov, Hongmei Chen, Jianshu Duan, Satish C. B. Myneni, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

With the increased occurrences of wildfires worldwide, there has been an increase in scientific interest surrounding the chemistry of fire-derived "black" carbon (BC). Traditionally, wildfire research has assumed that condensed aromatic carbon (ConAC) is exclusively produced via combustion, and thus, ConAC is equated to BC. However, the lack of correlations between ConAC in soils or rivers and wildfire history suggests that ConAC may be produced non-pyrogenically. Here, we show quantitative evidence that this occurs during the oxidation of biomass with environmentally ubiquitous hydroxyl radicals. Pine wood boards exposed to iron nails and natural weather conditions for 12 years yielded a …

Exploring Soil Microbial Dynamics In Southern Appalachian Forests: A Systems Biology Approach To Prescribed Fire Impacts, Saad Abd Ar Rafie

Doctoral Dissertations

Prescribed fires in Southern Appalachian forests are vital in ecosystem management and wildfire risk mitigation. However, understanding the intricate dynamics between these fires, soil microbial communities, and overall ecosystem health remains challenging. This dissertation addresses this knowledge gap by exploring selected aspects of this complex relationship across three interconnected chapters.

The first chapter investigates the immediate effects of prescribed fires on soil microbial communities. It reveals subtle shifts in porewater chemistry and significant increases in microbial species richness. These findings offer valuable insights into the interplay between soil properties and microbial responses during the early stages following a prescribed fire. …

Sources And Controls Of Carbon Dioxide In Inland Waters At Watershed, Regional, And Continental Scales, Brian Saccardi

Doctoral Dissertations

Inland waters are significant sources of carbon dioxide to the atmosphere, and estimates of emissions are similar in magnitude to those of the carbon dioxide sequestered by the net terrestrial sink. Currently, methods of estimating carbon dioxide emissions are based on statistical approaches and often do not consider landscape attributes such as human development, agriculture, or the hydrologic connectivity of the stream network. The following research addresses these issues in chapter 1 by developing and validating a reactive transport model at the watershed scale, then in chapter 2 by applying the reactive transport model at the continental scale across US …

Contributions Of Tunneling In 8Π-6Π Electrocyclic Cascade Reactions Of Bicyclo[4.2.0]Octa-2,4-Diene Moieties, Ishika Jain, Claire Castro, William L. Karney

Featured Student Work

Six-electron electrocyclic reactions usually require relatively high temperatures; however recent research has shown that such reactions can occur at significantly lower temperatures in biosynthetic and biomimetic pathways. Pathways resulting in bicyclo[4.2.0]octa-2,4-diene moieties arise from thermally allowed 8π-6π electrocyclization cascade reactions of 1,3,5,7-octatetraenes, as in the biosynthesis of endiandric acids, elysiapyrones, and numerous other natural products. We report multidimensional tunneling calculations to explore the possible contribution of heavy-atom tunneling (e.g. by carbon) to biosynthetic pathways and biomimetic syntheses, and thus to provide a more complete picture of biochemical kinetics. M06-2X/cc-pVDZ calculations on the 8π-6π cascade cyclizations of methylated octatetraene model systems …

Upgraded Carbon Ores To Products, University Of North Dakota. Energy And Environmental Research Center

EERC Brochures and Fact Sheets

Fact sheet on the Energy & Environmental Research Center (EERC) project to develop domestic battery materials from upgraded carbon ores. Includes information on upgraded carbon ores to products (UCOP) technology and a timeline for development.

Carbon Nanotubes Animated, Nicholas Onyemeke

Chemistry Summer Fellows

In this project, I implemented the knowledge about carbon nanotubes into an animated short. The animated short is meant to simplify the research so that anyone can understand regardless of their background in science. The research I did was on how nanotubes can be used in the medical field as a measure to inhibit bacteria growth. A nanotube dye solution was synthesized to inoculate bacteria along with an antibiotic solution with the nanotubes. This was done to observe how well the nanotubes can inhibit bacteria growth without the need for a drug compared to the effectiveness when it has a …

Battery Design, Construction, And Characterization For Small Motor Use Focusing On Anodic Zinc For Electron Flow, Amber Veach

Chemical Engineering Undergraduate Honors Theses

This thesis explores the construction, characterization, and application of anodic zinc batteries for powering a small electric motor for the ChemE Car competition. Two zinc galvanic cell batteries were studied: zinc-carbon and zinc-air batteries. Prototype batteries were constructed and tested for voltage, amperage, and power production. In the zinc-carbon trials, a 3:1 mixture of manganese dioxide and graphite was determined to be the best cathode for power production. The size which allowed for sufficient power while maintaining the smallest footprint on the car was a zinc can six cm tall and two cm in diameter. Analysis of paper zinc-air battery …

Modeling Spatial Distributions Of Tidal Marsh Blue Carbon Using Morphometric Parameters From Lidar, Bonnie Turek

Masters Theses

Tidal marshes serve as important “blue carbon” ecosystems that accrete large amounts of carbon with limited area. While much attention has been paid to the spatial variability of sedimentation within salt marshes, less work has been done to characterize spatial variability in marsh carbon density. Driven by tidal inundation, surface topography, and sediment supply, soil properties in marshes vary spatially with several parameters, including marsh platform elevation and proximity to the marsh edge and tidal creek network. We used lidar to extract these morphometric parameters from tidal marshes to map soil organic carbon (SOC) at the meter scale. Fixed volume …

Carbon Sequestration Capacities Of Different Land Cover Types And Climate Change, Nicole L. Melnick, Annabel Gorman, Adam F. Warren

Student Publications

Human-caused climate change creates a positive feedback loop that emits more carbon dioxide into the atmosphere instead of being sequestered in the Earth or its oceans. A major contributor to this feedback loop is deforestation in order to use land for agriculture and livestock. This study aims to investigate differences in carbon sequestration capabilities of forests, pastures, and cropland through soil and tree sampling in Gettysburg, Pennsylvania. The main hypothesis of this study is that forested land will be the most effective at carbon sequestration. The loss on ignition method (LOI) was used to determine the percent organic material in …

Timing And Magnitude Of Drought Impacts On Carbon Uptake Across A Grassland Biome, Andrew Felton, Gregory R. Goldsmith

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Although drought is known to negatively impact grassland functioning, the timing and magnitude of these impacts within a growing season remains unresolved. Previous small-scale assessments indicate grasslands may only respond to drought during narrow periods within a year; however, large-scale assessments are now needed to uncover the general patterns and determinants of this timing. We combined remote sensing datasets of gross primary productivity and weather to assess the timing and magnitude of grassland responses to drought at 5 km² temporal resolution across two expansive ecoregions of the western US Great Plains biome: the C₄-dominated shortgrass steppe and …

First Measurement Of Λ Electroproduction Off Nuclei In The Current And Target Fragmentation Regions, T. Chetry, L. El Fassi, W. K. Brooks, R. Dupré, A. El Alaoui, K. Hafidi, P. Achenbach, K. P. Adhikari, Z. Akbar, W.R. Armstrong, M. Arratia, H. Atac, H. Avakian, L. Baashen, N.A. Baltzell, M. Bashkanov, M. Battaglieri, I. Bedlinsky, B. Benkel, M. Zurek, Et Al., Clas Collaboration

Physics Faculty Publications

We report results of Λ hyperon production in semi-inclusive deep-inelastic scattering off deuterium, carbon, iron, and lead targets obtained with the CLAS detector and the Continuous Electron Beam Accelerator Facility 5.014 GeV electron beam. These results represent the first measurements of the Λ multiplicity ratio and transverse momentum broadening as a function of the energy fraction (z) in the current and target fragmentation regions. The multiplicity ratio exhibits a strong suppression at high zand an enhancement at low z. The measured transverse momentum broadening is an order of magnitude greater than that seen for light mesons. This …

Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. Mcmahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards

Biological Sciences Faculty Publications

Mesophotic corals live at ~30-150 m depth and can sustain metabolic processes under light-limited conditions by enhancing autotrophy through specialized photoadaptations or increasing heterotrophic nutrient acquisition. These acclimatory processes are often species-specific, however mesophotic ecosystems are largely unexplored and acclimation limits for most species are unknown. This study examined mesophotic coral ecosystems using a remotely operated vehicle (Ashmore Reef, Western Australia at 40–75m depth) to investigate the trophic ecology of five species of scleractinian coral (from genera Leptoseris, Pachyseris, and Craterastrea) using stable isotope analyses (δ¹³C and δ¹⁵N) of host and symbiont tissues …

Long-Term Stability Of Ferri-/Ferrocyanide As An Electroactive Component For Redox Flow Battery Applications: On The Origin Of Apparent Capacity Fade, Eric M. Fell, Diana De Porcellinis, Yan Jing, Valeria Gutierrez-Venegas, Thomas Y. George, Roy G. Gordon, Sergio Granados-Focil, Michael Aziz

Chemistry

We assess the suitability of potassium ferri-/ferrocyanide as an electroactive species for long-term utilization in aqueous organic redox flow batteries. A series of electrochemical and chemical characterization experiments was performed to distinguish between structural decomposition and apparent capacity fade of ferri-/ferrocyanide solutions used in the capacity-limiting side of a flow battery. Our results indicate that, in contrast with previous reports, no structural decomposition of ferri-/ferrocyanide occurs at tested pH values as high as 14 in the dark or in diffuse indoor light. Instead, an apparent capacity fade takes place due to a chemical reduction of ferricyanide to ferrocyanide, via chemical …

Potential Interactions Between Diatoms And Bacteria Are Shaped By Trace Element Gradients In The Southern Ocean, Alexa R. Sterling, Laura Z. Holland, Randelle M. Bundy, Shannon M. Burns, Kristen N. Buck, P. Dreux Chappell, Bethany D. Jenkins

OES Faculty Publications

The growth of diatoms in the Southern Ocean, especially the region surrounding the West Antarctic Peninsula, is frequently constrained by low dissolved iron and other trace metal concentrations. This challenge may be overcome by mutualisms between diatoms and co-occurring associated bacteria, in which diatoms produce organic carbon as a substrate for bacterial growth, and bacteria produce siderophores, metal-binding ligands that can supply diatoms with metals upon uptake as well as other useful secondary compounds for diatom growth like vitamins. To examine the relationships between diatoms and bacteria in the plankton (diatom) size class (> 3 mu m), we sampled both …

Isotopic Evidence For Sources Of Dissolved Carbon And The Role Of Organic Matter Respiration In The Fraser River Basin, Canada, Britta M. Voss, Timothy I. Eglinton, Bernhard Peucker-Ehrenbrink, Valier Galy, Susan Q. Lang, Cameron Mcintyre, Robert G.M. Spencer, Ekaterina Bulygina, Zhaohui Aleck Wang, Katherine A. Guay

OES Faculty Publications

Sources of dissolved and particulate carbon to the Fraser River system vary significantly in space and time. Tributaries in the northern interior of the basin consistently deliver higher concentrations of dissolved organic carbon (DOC) to the main stem than other tributaries. Based on samples collected near the Fraser River mouth throughout 2013, the radiocarbon age of DOC exported from the Fraser River does not change significantly across seasons despite a spike in DOC concentration during the freshet, suggesting modulation of heterogeneous upstream chemical and isotopic signals during transit through the river basin. Dissolved inorganic carbon (DIC) concentrations are highest in …

The Role Of Grass Tussocks In Maintaining Soil Condition In North East Australia, B. K. Northup, J. R. Brown

IGC Proceedings (1997-2023)

Soils of the grazing lands of north eastern Australia are inherently nutrient-poor. Heterogeneously distributed plants are important to the conservation of the limited amounts of nutrients, through storage in plant tissues or in soil sinks close to plants (Ludwig et al., 1997). Loss of perennial vegetation through disturbance reduces conservation of these resources, to the detriment of feedback mechanisms, and ultimately causes loss of soil condition. Large areas of north east Australia have been degraded, or threatened by degradation, through combinations of variability in precipitation and heavy grazing (Gardener et al., 1990). This study examined the inter-related responses …

Manganese Bioavailability Drives Organic Matter Transformations Across Oxic-Anoxic Interfaces Via Biotic And Abiotic Pathways, Nathan A. Chin

Masters Theses

Soil organic matter decomposition is a critical process that affects nutrient cycling, CO₂ emissions, and carbon storage in terrestrial environments. Recent evidence suggests reactive manganese (Mn) phases, potent oxidants that depolymerize compounds like lignocellulose in soil organic matter, act as critical drivers of organic matter decomposition in soil and sediment environments. Furthermore, oxic-anoxic interfaces (OAIs) have been shown to be crucial hotspots for the formation of reactive Mn(III) species and associated organic matter degradation. However, the extent to which microbially mediated Mn(III) formation and subsequently Mn(III)-driven organic matter oxidation depends on Mn availability remains largely unknown. Additionally, the relative …

Saturable Absorption Of Free-Electron Laser Radiation By Graphite Near The Carbon K-Edge, Lars Hoffmann, Sasawat Jamnuch, Craig P. Schwartz, Tobias Helk, Sumana L. Raj, Hikaru Mizuno, Riccardo Mincigrucci, Laura Foglia, Emiliano Principi, Shervin Fatehi

Chemistry Faculty Publications and Presentations

The interaction of intense light with matter gives rise to competing nonlinear responses that can dynamically change material properties. Prominent examples are saturable absorption (SA) and two-photon absorption (TPA), which dynamically increase and decrease the transmission of a sample depending on pulse intensity, respectively. The availability of intense soft X-ray pulses from free-electron lasers (FELs) has led to observations of SA and TPA in separate experiments, leaving open questions about the possible interplay between and relative strength of the two phenomena. Here, we systematically study both phenomena in one experiment by exposing graphite films to soft X-ray FEL pulses of …

Analysis Of Soil Change Across Nebraska, Trinity Baker

School of Natural Resources: Dissertations, Theses, and Student Research

The world’s population is growing and an increasing populace requires more resources. These requirements place increasing pressure on the environment and the soil. Soils serve many important functions throughout the world. These functions range from offering a media for food production, providing a sink for organic carbon, nutrient cycling, and improving water quality. It is important to focus on the human impact on soils and their change over time.

For my research I examined how soils across Nebraska have changed over a time period of roughly 65 years. I sampled and analyzed 39 pedons from four Major Land Resource Areas …

Sedimentary Characteristics And Associated Carbon And Nutrients Of Overbank Sediments Deposited During The 2018, 2019, And 2020 Floods In Embanked Floodplains Along The Lower Mississippi River Near Natchez, Mississippi, Rachel Kelk

Master's Theses

The Lower Mississippi River (LMR) experienced major floods in 2018, 2019, and 2020. Sediment deposition in the embanked floodplains during floods represent important storage and sequestration opportunities for carbon and nutrients from ~40% of the continental USA. This research aims to compare depositional thicknesses, organic matter (OM), carbon (C), nitrogen (N), phosphorous (P) concentrations, and grain sizes in floodplain sediments deposited by the combined 2018-19 floods to the 2020 flood along the LMR near Natchez, Mississippi. Greater depositional thicknesses in 2018-19 are best explained by their combined flood durations; the 2019 flood was the longest in recorded history. Slightly higher …

Stable Carbon And Nitrogen Isotopes Of Shell Bound Organic Matter, Implications For Modern And Ancient Food Web Dynamics, Shibajyoti Das

Dissertations - ALL

Stable isotopes are an important tool for solving biogeochemical problems and have been increasingly applied in ecosystem studies because of their utility as source-to-sink tracers and for ecological information. Elements like C and N have more than one stable isotope, and their isotopic compositions (δ15N and δ13C) vary in a foreseeable way and are specifically useful in studying global elemental cycles and energy flow through ecosystems. δ15N and δ13C of organic matter (OM) are diagnostic of an organism's diet and have been used as a proxy for trophic level reconstructions. However, because of several analytical constraints, the use of stable …

Concentrating On Carbon Concentration In Algae, Chandra Davies, Steven Burgess

PRECS student projects

Carbon Concentrating Mechanisms Improve Photosynthesis Rates in Low-Carbon Environments. CCMs allow the aggregation of carbon near the site of rubisco, that way even small amounts of available carbon are being utilized.

Yes, this is important to you!

Albeit somewhat indirectly, but massively nonetheless! Algae are a driving force behind the global carbon cycle, they sequester CO2 in the oceans. Understanding the mechanisms behind the tiny marine alga O. tauri gives us a better understanding of a vital global process.

Black Carbon And Organic Carbon Dataset Over The Third Pole, Shichang Kang, Yulan Zhang, Pengfei Chen, Junming Guo, Qianggong Zhang, Zhiyuan Cong, Susan Kaspari, Lekhendra Tripathee, Tanguang Gao, Hewen Niu, Xinyue Zhong, Xintong Chen, Zhaofu Hu, Xiaofei Li, Yang Li, Bigyan Neupane, Fangping Yan, Dipesh Rupakheti, Chaman Gul, Wei Zhang, Guangming Wu, Ling Yang, Zhaoqing Wang, Chaoliu Li

Geological Sciences Faculty Scholarship

The Tibetan Plateau and its surroundings, also known as the Third Pole, play an important role in the global and regional climate and hydrological cycle. Carbonaceous aerosols (CAs), including black carbon (BC) and organic carbon (OC), can directly or indirectly absorb and scatter solar radiation and change the energy balance on the Earth. CAs, along with the other atmospheric pollutants (e.g., mercury), can be frequently transported over long distances into the inland Tibetan Plateau. During the last decades, a coordinated monitoring network and research program named “Atmospheric Pollution and Cryospheric Changes” (APCC) has been gradually set up and continuously operated …

Geomorphic Gradients In Shallow Seagrass Carbon Stocks, Jahson Berhane Alemu, Siti Maryam Yaakub, Erik S. Yando, Rachel Yu San Lau, Cheng Chang Lim, Jun Yu Puah, Daniel A. Friess

Biological Sciences Faculty Publications

Seagrass meadows are important sinks of organic carbon (C_org), in particular the near-surface C_org pool (≤ 15 cm) compared to deeper sediments. Near-surface carbon is highly susceptible to disturbance and loss to the atmosphere, however, inadequate accounting for variability in this pool of carbon limits their uptake into carbon accounting frameworks. We therefore investigated the spatial variability in seagrass near-surface C_org and biomass C_org across different geomorphic (estuary, lagoonal and reef-associated) and community typologies (pioneer and persistent). Near-surface C_org stock in vegetated areas (25.78 Mg C_org ha⁻¹ ± 26.64) was twice that …

Insights Into The Deglacial Variability Of Phytoplankton Community Structure In The Eastern Equatorial Pacific Ocean Using [231Pa/230Th]Xs And Opal-Carbonate Fluxes, Danielle Schimmenti, Franco Marcantonio, Christopher T. Hayes, Jennifer Hertzberg, Matthew Schmidt, John Sarao

OES Faculty Publications

Fully and accurately reconstructing changes in oceanic productivity and carbon export and their controls is critical to determining the efficiency of the biological pump and its role in the global carbon cycle through time, particularly in modern CO₂ source regions like the eastern equatorial Pacific (EEP). Here we present new high-resolution records of sedimentary ²³⁰Th-normalized opal and nannofossil carbonate fluxes and [²³¹Pa/²³⁰Th]xs ratios from site MV1014-02-17JC in the Panama Basin. We find that, across the last deglaciation, phytoplankton community structure is driven by changing patterns of nutrient (nitrate, iron, and silica) availability which, in …

Temporal Stability Of Seagrass Extent, Leaf Area, And Carbon Storage In St. Joseph Bay, Florida: A Semi-Automated Remote Sensing Analysis, Marie Cindy Lebrasse, Blake A. Schaeffer, Megan M. Coffer, Peter J. Whitman, Richard C. Zimmerman, Victoria J. Hill, Kazi A. Islam, Jiang Li, Christopher L. Osburn

OES Faculty Publications

Seagrasses are globally recognized for their contribution to blue carbon sequestration. However, accurate quantification of their carbon storage capacity remains uncertain due, in part, to an incomplete inventory of global seagrass extent and assessment of its temporal variability. Furthermore, seagrasses are undergoing significant decline globally, which highlights the urgent need to develop change detection techniques applicable to both the scale of loss and the spatial complexity of coastal environments. This study applied a deep learning algorithm to a 30-year time series of Landsat 5 through 8 imagery to quantify seagrass extent, leaf area index (LAI), and belowground organic carbon (BGC) …

Examining Ecological Succession Of Diatoms In California Current System Cyclonic Mesoscale Eddies, Zuzanna M. Abdala, Sophie Clayton, Sveinn V. Einarsson, Kimberly Powell, Claire P. Till, Tyler H. Coale, P. Dreux Chappell

OES Faculty Publications

The California Current System is a diatom-dominated region characterized by seasonal coastal upwelling and additional elevated mesoscale activity. Cyclonic mesoscale eddies in the region trap productive coastal waters with their planktonic communities and transport them offshore with limited interaction with surrounding waters, effectively acting as natural mesocosms, where phytoplankton populations undergo ecological succession as eddies age. This study examines diatom community composition within two mesoscale cyclonic eddies that formed in the same region of the California Current System 2 months apart and in the California Current waters surrounding them. The diatom communities were analyzed in the context of shifting environmental …

Sorption Of 2-Naphthalene Sulfonate To Organic Carbon In Natural Saturated Porous Media, Jiyan Hatami

Theses and Dissertations

Organic carbon (OC) in aquifer sediments serves as a key geochemical control on contaminant fate and transport, potentially immobilizing or delaying mass transport downgradient. Quantifying the abundance of OC in aquifer sediments is therefore imperative in developing a conceptual understanding of local contaminant transport. Traditional methods involve time-intensive coring and lab analyses for total OC (TOC) at distinct intervals with depth. These methods fail to account for the heterogeneity between discrete points and do not interrogate TOC along groundwater flow pathways. 2-naphthalene sulfonate (2-NS), a novel groundwater tracer, was investigated here as a possible sorptive tracer for estimating the relative …