Physical Sciences and Mathematics Commons^™

Plague Risk In The Western United States Over Seven Decades Of Environmental Change, Colin J. Carlson, Sarah N. Bevins, Boris V. Schmid

United States Department of Agriculture Wildlife Services: Staff Publications

After several pandemics over the last two millennia, the wildlife reservoirs of plague (Yersinia pestis) now persist around the world, including in the western United States. Routine surveillance in this region has generated comprehensive records of human cases and animal seroprevalence, creating a unique opportunity to test how plague reservoirs are responding to environmental change. Here, we test whether animal and human data suggest that plague reservoirs and spillover risk have shifted since 1950. To do so, we develop a new method for detecting the impact of climate change on infectious disease distributions, capable of disentangling long-term trends (signal) and …

Wild Pig Removal Reduces Pathogenic Bacteria In Low-Order Streams, Sara A. Bolds, B. Graeme Lockaby, Latif Kalin, Stephen S. Ditchkoff, Mark D. Smith, Kurt Vercauteren

United States Department of Agriculture Wildlife Services: Staff Publications

Invasive wild pig populations have undergone enormous increases in the United States and particularly across the southern U.S. in recent years. High fecundity rates and abilities to adapt quickly to varied habitats have enabled pig populations to become entrenched and difficult to eliminate. The pigs cause many negative impacts on ecosystems including degradation of water quality through infusion of fecal contamination and other non-point source pollutants. Our goal was to determine the effects of pig removal on water quality in streams that were known to be significantly polluted by pig activity Bolds (J Environ Qual 50: 441–453, 2021). We compared …

A Model For Leveraging Animal Movement To Understand Spatio-Temporal Disease Dynamics, Mark Q. Wilber, Anni Yang, Raoul Boughton, Kezia R. Manlove, Ryan S. Miller, Kim M. Pepin, George Wittemyer

United States Department of Agriculture Wildlife Services: Staff Publications

The ongoing explosion of fine-resolution movement data in animal systems provides a unique opportunity to empirically quantify spatial, temporal and individual variation in transmission risk and improve our ability to forecast disease outbreaks. However, we lack a generalizable model that can leverage movement data to quantify transmission risk and how it affects pathogen invasion and persistence on heterogeneous landscapes. We developed a flexible model ‘Movement-driven modelling of spatio-temporal infection risk’ (MoveSTIR) that leverages diverse data on animal movement to derive metrics of direct and indirect contact by decomposing transmission into constituent processes of contact formation and duration and pathogen deposition …

Transverse Oscillating Bubble Enhanced Laser‑Driven Betatron X‑Ray Radiation Generation, Rafal Rakowski, Ping Zhang, Kyle Jensen, Brendan Kettle, Tim Kawamoto, Sudeep Banerjee, Colton Fruhling, Grigory Golovin, Daniel Haden, Matthew S. Robinson, Donald Umstadter, Bradley A. Shadwick, Matthias Fuchs

Department of Physics and Astronomy: Faculty Publications

Ultrafast high-brightness X-ray pulses have proven invaluable for a broad range of research. Such pulses are typically generated via synchrotron emission from relativistic electron bunches using large-scale facilities. Recently, significantly more compact X-ray sources based on laser-wakefield accelerated (LWFA) electron beams have been demonstrated. In particular, laser-driven sources, where the radiation is generated by transverse oscillations of electrons within the plasma accelerator structure (so-called betatron oscillations) can generate highly-brilliant ultrashort X-ray pulses using a comparably simple setup. Here, we experimentally demonstrate a method to markedly enhance the parameters of LWFA-driven betatron X-ray emission in a proof-of-principle experiment. We show a …

Spin Hall Effect Of Vorticity, Edward Schwartz, Hamed Vakili, Moaz Ali, Alexey Kovalev

Department of Physics and Astronomy: Faculty Publications

Using mapping between topological defects in an easy-plane magnet and electrical charges, we study interplay between vorticity and spin currents. We demonstrate that the flow of vorticity is accompanied by the transverse spin current generation; an effect which can be termed as the spin Hall effect of vorticity. We study this effect across the BKT transition and establish the role of dissipation and spin nonconservation in the crossover from spin superfluidity to diffusive spin transport. Our results pave the way for low power computing devices relying on vorticity and spin flows that can propagate over long distances.

Superfluid Spin Transistor, Edward Schwartz, Bo Li, Alexey Kovalev

Alexey Kovalev Papers

We propose to use the Hall response of topological defects, such as merons and antimerons, to spin currents in two-dimensional magnetic insulator with in-plane anisotropy for identification of the Berezinskii-Kosterlitz-Thouless (BKT) transition in a transistorlike geometry. Our numerical results relying on a combination of Monte Carlo and spin dynamics simulations show transition from spin superfluidity to conventional spin transport, accompanied by the universal jump of the spin stiffness and exponential growth of the transverse vorticity current. We propose a superfluid spin transistor in which the spin and vorticity currents are modulated by changes in density of free topological defects, e.g., …

Second Twenty-Five Year Index: Volumes 26–50, 1994–2018, Jane E. Austin

The Prairie Naturalist

The first 50 years of the Prairie Naturalist reside on the shelves of libraries and personal collections. The articles and notes published over those years provide invaluable knowledge about Great Plains biota, communities, conservation, and landscape ecologies. Awareness of the wealth of information in those 50 print volumes has been limited, relying on references from other published papers or the limited number of articles that have been made available online by authors. This index serves as resource for individuals to digitally tap into the information published since 1994. This index, together with the first 25-year index, serves to complement the …

Review Of Loon Lessons: Uncommon Encounters With The Great Northern Diver, By James D. Paruk, Kristin Bianchini

The Prairie Naturalist

Gavia immer Brunnich (Common Loon) is a bird that has captivated bird watchers, wildlife enthusiasts, campers, cottagers, and others interested in the natural world for centuries. The loon also features prominently in Native American mythology. For many, the loon symbolizes the wildness of the north, and it is often used as a sentinel of lake health. Indeed, the Common Loon has inspired a wealth of literature, both scientific and popular, describing this species’ ecology, behavior, and fitness in the face of environmental changes. To this literature, Loon Lessons: Uncommon Encounters with the Great Northern Diver adds a complete and accurate …

Infrared Dielectric Functions And Brillouin Zone Center Phonons Of Α-Ga2O3 Compared To Α-Al2O3, Megan Stokey, Rafal Korlacki, Matthew J. Hilfiker, Sean Knight, Steffen Richter, Vanya Darakchieva, Riena Jinno, Yongjin Cho, Huili Grace Xing, Debdeep Jena, Yuichi Oshima, Kamruzzaman Khan, Elaheh Ahmadi, Mathias Schubert

Department of Electrical and Computer Engineering: Faculty Publications

We determine the anisotropic dielectric functions of rhombohedral α-Ga₂O₃ by far-infrared and infrared generalized spectroscopic ellipsometry and derive all transverse optical and longitudinal optical phonon mode frequencies and broadening parameters. We also determine the high-frequency and static dielectric constants. We perform density functional theory computations and determine the phonon dispersion for all branches in the Brillouin zone, and we derive all phonon mode parameters at the Brillouin zone center including Raman-active, infrared-active, and silent modes. Excellent agreement is obtained between our experimental and computation results as well as among all previously reported partial information from experiment …

Male Mastodon Landscape Use Changed With Maturation (Late Pleistocene, North America), Joshua H. Miller, Daniel C. Fisher, Brooke E. Crowley, Ross Secord, Bledar A. Konomi

Department of Earth and Atmospheric Sciences: Faculty Publications

Under harsh Pleistocene climates, migration and other forms of seasonally patterned landscape use were likely critical for reproductive success of mastodons (Mammut americanum) and other megafauna. However, little is known about how their geographic ranges and mobility fluctuated seasonally or changed with sexual maturity. We used a spatially explicit movement model that coupled strontium and oxygen isotopes from two serially sampled intervals (5+ adolescent years and 3+ adult years) in a male mastodon tusk to test for changes in landscape use associated with maturation and reproductive phenology. The mastodon’s early adolescent home range was geographically restricted, with no evidence of …

Cloud Radiative Effects On Mjo Development In Dynamo, Qi Hu, Zihang Han, Shuguang Wang

Department of Earth and Atmospheric Sciences: Faculty Publications

Observed Madden–Julian oscillation (MJO) events are examined with the aid of regional model simulations to understand the role of cloud radiative effects in the MJO development. The importance of this role is demonstrated by the absence of the MJO in the model simulations that contain no cloud radiative effects. Comparisons of model simulations with and without the cloud radiative effects and observation help identify the major processes arising from those effects. Those processes develop essentially from heating in the upper troposphere due to shortwave absorption within anvil clouds in the upper troposphere and the convergence of longwave radiation in the …

Recent Advances Toward Transparent Methane Emissions Monitoring: A Review, Broghan M. Erland, Andrew K. Thorpe, John Gamon

Department of Earth and Atmospheric Sciences: Faculty Publications

Given that anthropogenic greenhouse gas (GHG) emissions must be immediately reduced to avoid drastic increases in global temperature, methane emissions have been placed center stage in the fight against climate change. Methane has a significantly larger warming potential than carbon dioxide. A large percentage of methane emissions are in the form of industry emissions, some of which can now be readily identified and mitigated. This review considers recent advances in methane detection that allow accurate and transparent monitoring, which are needed for reducing uncertainty in source attribution and evaluating progress in emissions reductions. A particular focus is on complementary methods …

High Throughput Analysis Of Leaf Chlorophyll Content In Sorghum Using Rgb, Hyperspectral, And Fluorescence Imaging And Sensor Fusion, Huichun Zhang, Yufeng Ge, Xinyan Xie, Abbas Atefi, Nuwan Wijewardane,, Suresh Thapa

School of Computing: Faculty Publications

Leaf chlorophyll content plays an important role in indicating plant stresses and nutrient status. Traditional approaches for the quantification of chlorophyll content mainly include acetone ethanol extraction, spectrophotometry and high-performance liquid chromatography. Such destructive methods based on laboratory procedures are time consuming, expensive, and not suitable for high-throughput analysis. High throughput imaging techniques are now widely used for non-destructive analysis of plant phenotypic traits. In this study three imaging modules (RGB, hyperspectral, and fluorescence imaging) were, separately and in combination, used to estimate chlorophyll content of sorghum plants in a greenhouse environment. Color features, spectral indices, and chlorophyll fluorescence intensity …

Strange Stones Of Skull Creek: Basalt Glacial Erratics And Omars In Eastern Nebraska, Robert M. Joeckel, Jesse T. Korus, Judith Turk, C. C. Arps, N. V. Arps, Leslie M. Howard

Conservation and Survey Division: Faculty and Staff Publications

We describe unusual stream- reworked glacially transported rocks (erratics) from a locality 50 km east of the limit of all pre- Illinoian (pre- 190 ka) Pleistocene glaciations in the central USA. Almost all these erratics consist of the igneous rock basalt, and of those, the vast majority have at least one fl at, smooth face. Some have two or more such faces that meet at obtuse angles along one or more well- defi ned, straight edges. We attribute these features, as well as laminations, plumose marks, and other features, to columnar jointing in ancient lava fl ows and shallow intrusions. …

The Impact Of Sampling Methodology On Soil Bulk Density Measurement By The Clod Method, Aldi J. Airori, Trinity Baker, Judith Turk

Conservation and Survey Division: Faculty and Staff Publications

The clod method is a widely used and accurate bulk density method. However, its use is limited to sampling from soil pits. This study was conducted to: 1) determine whether clods collected from cores provide similar bulk density measurements to those collected from soil pits and 2) evaluate the impact of various clod bulk density methods on carbon stock calculation. Clods were collected from soil pits, 5.1 cm soil cores, and 8.9 cm soil cores. Three-dimensional laser scanning was used to measure the volume of the soil clods before and after oven-drying and bulk density was calculated as the dry …

Amphibians And Reptiles Of Nebraska Coloring Pages, John Lokke

Conservation and Survey Division: Faculty and Staff Publications

Black and white images from original art by John Lokke. Suitable for coloring pages. Published by the Nebraska Maps & More Store at the School of Natural Resources, University of Nebraska - Lincoln.

Using Deep Learning To Detect Digitally Encoded Dna Trigger For Trojan Malware In Bio‑Cyber Attacks, M. S. Islam, S. Ivanov, H. Awan, J. Drohan, Sasitharan Balasubramaniam, L. Coffey, Srivatsan Kidambi, W. Sri-Saan

School of Computing: Faculty Publications

This article uses Deep Learning technologies to safeguard DNA sequencing against Bio-Cyber attacks. We consider a hybrid attack scenario where the payload is encoded into a DNA sequence to activate a Trojan malware implanted in a software tool used in the sequencing pipeline in order to allow the perpetrators to gain control over the resources used in that pipeline during sequence analysis. The scenario considered in the paper is based on perpetrators submitting synthetically engineered DNA samples that contain digitally encoded IP address and port number of the perpetrator’s machine in the DNA. Genetic analysis of the sample’s DNA will …

Mr-Pipa: An Integrated Multi-Level Rram (Hfox) Based Processing-In-Pixel Accelerator, Minhaz Abedin, Arman Roohi, Maximilian Liehr, Nathaniel Cady, Shaahin Angizi

School of Computing: Faculty Publications

This work paves the way to realize a processing-in-pixel accelerator based on a multi-level HfO_x RRAM as a flexible, energy-efficient, and high-performance solution for real-time and smart image processing at edge devices. The proposed design intrinsically implements and supports a coarse-grained convolution operation in low-bit-width neural networks leveraging a novel compute-pixel with non-volatile weight storage at the sensor side. Our evaluations show that such a design can remarkably reduce the power consumption of data conversion and transmission to an off-chip processor maintaining accuracy compared with the recent in-sensor computing designs. Our proposed design, namely MR-PIPA, achieves a frame rate …

Decision-Theoretic Planning With Communication In Open Multiagent Systems, Anirudh Kakarlapudi, Gayathri Anil, Adam Eck, Prashant Doshi, Leen-Kiat Soh

School of Computing: Faculty Publications

In open multiagent systems, the set of agents operating in the environment changes over time and in ways that are nontrivial to predict. For example, if collaborative robots were tasked with fighting wildfires, they may run out of suppressants and be temporarily unavailable to assist their peers. Because an agent’s optimal action depends on the actions of others, each agent must not only predict the actions of its peers, but, before that, reason whether they are even present to perform an action. Addressing openness thus requires agents to model each other’s presence, which can be enhanced through agents communicating about …

The Three-Way Interplay Among Early Life Exposures, The Gut Microbiome, And Outcomes In Infancy, Yuka Moroishi

Dartmouth College Ph.D Dissertations

The bidirectional relationship between the gut microbiome and immune system plays an important role in host immune status: the immune system provides the gut microbiome the optimal environment to thrive in, and the gut microbiome helps regulate the immune system. This relationship is especially important in infants, whose immune system is still premature and rely on innate immunity.

We investigated the three-way interplay among early-life exposures, the developing gut microbiome, and outcomes in infancy from the general population in New Hampshire, US. We used prospective cohort data from the New Hampshire Birth Cohort study to 1) determine whether timing of …

Consultation Summary For Proposed Declared Pest Rates 2022/2023, Department Of Primary Industries And Regional Development, Western Australia

Biosecurity published reports

In accordance with the Biosecurity and Agriculture Management (Declared Pest Account) Regulations 2014, the Minister for Agriculture and Food carries out consultation on Declared Pest Rates, to be considered prior to the rates being determined and gazetted.

This document is the Department of Primary Industries and Regional Development's response to the submissions received.

Habitat Use And Diel Movements Of Silver Carp Hypophthalmichthys Molitrix In Two Southeastern Reservoirs, Levi Umland

Murray State Theses and Dissertations

Bigheaded carp have spread rampantly throughout the Mississippi watershed and continue to spread by navigating through rivers, locks, and dams. The long-term effects these species will have on our ecosystems and natural resources is unknown. Their movements, behavior, and general seasonal patterns are well studied within rivers. However, their movements and behavior within reservoirs is poorly understood due to their initial numbers within reservoirs being lower than in rivers. To address this gap, I investigated the distribution and movement rates of Silver Carp within two reservoirs, Kentucky Reservoir and Barkley Reservoir, and possible correlative variables, including wind, temperature, residency, sex, …

Tunneling Magnetoresistance In Noncollinear Antiferromagnetic Tunnel Junctions, J. Dong, X. Li, G. Gurung, M. Zhu, P. Zhang, F. Zheng, Evgeny Y. Tsymbal, J. Zhang

Evgeny Tsymbal Publications

Antiferromagnetic (AFM) spintronics has emerged as a subfield of spintronics driven by the advantages of antiferromagnets producing no stray fields and exhibiting ultrafast magnetization dynamics. The efficient method to detect an AFM order parameter, known as the Néel vector, by electric means is critical to realize concepts of AFM spintronics. Here, we demonstrate that noncollinear AFM metals, such as Mn₃Sn, exhibit a momentum dependent spin polarization which can be exploited in AFM tunnel junctions to detect the Néel vector. Using first-principles calculations, we predict a tunneling magnetoresistance (TMR) effect as high as 300% in AFM tunnel junctions with …

Gaia Contributions To Agroecology By James Lovelock (1919-2022), Steve Gliessman, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

In writing about the history of agroecology we too often ignore the valuable contributions of British scientist James Lovelock who recently died on his 103rd birthday. A prolific inventor and influential theorist, Lovelock is best known for the Gaia hypothesis first proposed during his innovative work in the 1960s with the United States National Aeronautics and Space Administration. He suggested that ‘the biosphere has a regulatory effect on the Earth’s environment that acts to sustain life’ as written in Gaia: A New Look at Life on Earth (Lovelock 1979). Lovelock further proposed that humans have strongly impacted the planet’s capacity …

The Influence Of Hydrogen Peroxide On The Enrichment Of Fe(Iii) Reducing Bacteria From Acid Mine Drainage, Susami Seth

Williams Honors College, Honors Research Projects

It is hypothesized that the ocean of Europa, a Jupiter moon, hosts bacteria on its oceanic floor. Understanding how Fe(III) reducing bacteria (FeRB) from AMD utilize organic materials within its surrounding environment outlines how FeRB could thrive and tolerate extreme conditions. FeRB are known to tolerate metals and highly reactive oxidants species (ROS), but in this experiment, H₂O₂ was the experimental factor to further test FeRB tolerance. H₂O₂ is a common ROS and is damaging to living material such as proteins, DNA, and RNA. A range of H₂O₂ concentrations were fed …

Effect Of Pre-Existing Fault Orientation On Strain Localization In A Foliated Granitic Gneiss, Geoffrey Hilliard

Williams Honors College, Honors Research Projects

The effect of fault orientation relative to the applied stress on reactivation of pre-existing brittle faults instead of forming new faults is well-explained by Mohr-Coulomb theory. However, Mohr-Coulomb theory does not explain the effect of orientation on reactivation of faults with a ductile rheology and no work has been performed to assess the effect of orientation of a pre-existing ductile fault on fault strength. In order to determine how rock strength and localization of strain into a ductile fault is affected when the orientation of the pre-existing fault (artificial fault) is changed, experiments were performed on pre-faulted cores of a …

Using Skeleton Correction To Improve Flash Lidar-Based Gait Recognition, Nasrin Sadeghzadehyazdi, Tamal Batabyal, Alexander Glandon, Nibir Dhar, Babajide Familoni, Khan Iftekharuddin, Scott T. Acton

Electrical & Computer Engineering Faculty Publications

This paper presents GlidarPoly, an efficacious pipeline of 3D gait recognition for flash lidar data based on pose estimation and robust correction of erroneous and missing joint measurements. A flash lidar can provide new opportunities for gait recognition through a fast acquisition of depth and intensity data over an extended range of distance. However, the flash lidar data are plagued by artifacts, outliers, noise, and sometimes missing measurements, which negatively affects the performance of existing analytics solutions. We present a filtering mechanism that corrects noisy and missing skeleton joint measurements to improve gait recognition. Furthermore, robust statistics are integrated with …

A Channel State Information Based Virtual Mac Spoofing Detector, Peng Jiang, Hongyi Wu, Chunsheng Xin

Electrical & Computer Engineering Faculty Publications

Physical layer security has attracted lots of attention with the expansion of wireless devices to the edge networks in recent years. Due to limited authentication mechanisms, MAC spoofing attack, also known as the identity attack, threatens wireless systems. In this paper, we study a new type of MAC spoofing attack, the virtual MAC spoofing attack, in a tight environment with strong spatial similarities, which can create multiple counterfeits entities powered by the virtualization technologies to interrupt regular services. We develop a system to effectively detect such virtual MAC spoofing attacks via the deep learning method as a countermeasure. …

Broadband Dielectric Spectroscopic Detection Of Aliphatic Alcohol Vapors With Surface-Mounted Hkust-1 Mofs As Sensing Media, Papa K. Amoah, Zeinab Mohammed Hassan, Rhonda R. Franklin, Helmut Baumgart, Engelbert Redel, Yaw S. Obeng

Electrical & Computer Engineering Faculty Publications

We leveraged chemical-induced changes to microwave signal propagation characteristics (i.e., S-parameters) to characterize the detection of aliphatic alcohol (methanol, ethanol, and 2-propanol) vapors using TCNQ-doped HKUST-1 metal-organic-framework films as the sensing material, at temperatures under 100 °C. We show that the sensitivity of aliphatic alcohol detection depends on the oxidation potential of the analyte, and the impedance of the detection setup depends on the analyte-loading of the sensing medium. The microwaves-based detection technique can also afford new mechanistic insights into VOC detection, with surface-anchored metal-organic frameworks (SURMOFs), which is inaccessible with the traditional coulometric (i.e., resistance-based) measurements.

Analysis Of Minor League Rule Changes Effect On Stolen Bases, Zachary Houghtaling

Williams Honors College, Honors Research Projects

This study uses various statistical analyses to evaluate the justification of rule changes for Major League Baseball that were implemented within the Minor Leagues during the 2021 minor league season. The primary focus of the study is predicting how some of these Minor League rule changes could affect the stolen base success rate and the number of attempts per game within the Major Leagues. A survey was conducted to evaluate how fans feel about stolen bases within the current game and if rules should be altered to increase the number of stolen bases that occur. Additionally, recorded Major and Minor …