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2011

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Articles 181 - 210 of 7728

Full-Text Articles in Physical Sciences and Mathematics

Overview Of Contrast Data Mining As A Field And Preview Of An Upcoming Book, Guozhu Dong, James Bailey Dec 2011

Overview Of Contrast Data Mining As A Field And Preview Of An Upcoming Book, Guozhu Dong, James Bailey

Kno.e.sis Publications

This report provides an overview of the field of contrast data mining and its applications, and offers a preview of an upcoming book on the topic. The importance of contrasting is discussed and a brief survey is given covering the following topics: general definitions and terminology for contrast patterns, representative contrast pattern mining algorithms, applications of contrast mining for fundamental data mining tasks such as classification and clustering, applications of contrast mining in bioinformatics, medicine, blog analysis, image analysis and subgroup mining, results on contrast based dataset similarity measure, and on analyzing item interaction in contrast patterns, and open research …

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Computing Inconsistency Measure Based On Paraconsistent Semantics, Pascal Hitzler, Yue Ma, Guilin Qi Dec 2011

Computing Inconsistency Measure Based On Paraconsistent Semantics, Pascal Hitzler, Yue Ma, Guilin Qi

Computer Science and Engineering Faculty Publications

Measuring inconsistency in knowledge bases has been recognized as an important problem in several research areas. Many methods have been proposed to solve this problem and a main class of them is based on some kind of paraconsistent semantics. However, existing methods suffer from two limitations: (i) they are mostly restricted to propositional knowledge bases; (ii) very few of them discuss computational aspects of computing inconsistency measures. In this article, we try to solve these two limitations by exploring algorithms for computing an inconsistency measure of first-order knowledge bases. After introducing a four-valued semantics for first-order logic, we define an …

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Inhibition Of Cysteine Protease By Platinum (Ii) Diamine Complexes, Chaitanya Rapolu Dec 2011

Inhibition Of Cysteine Protease By Platinum (Ii) Diamine Complexes, Chaitanya Rapolu

Masters Theses & Specialist Projects

Chemotherapy is the first line of treatment used in cancer. Chemotherapy drugs such as cisplatin, carboplatin and oxaliplatin are used in treatment. Cisplatin enters the cell through copper transporter CTR1 by passive diffusion and bind to DNA and proteins. Cisplatin is found to inhibit several enzymes targeting cysteine, histidine and methionine residues, which are expected to be responsible for its anticancer activity. A better understanding of how the size and shape and leaving ligands of platinum complexes affect cysteine protease, papain enzyme are studied. This could give new ways to optimize anticancer activity. The activity of papain enzyme was measured …

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Stability And Classification Performance Of Feature Selection Techniques, Huanjing Wang, Taghi Khoshgoftaar, Qianhui Liang Dec 2011

Stability And Classification Performance Of Feature Selection Techniques, Huanjing Wang, Taghi Khoshgoftaar, Qianhui Liang

Computer Science Faculty Publications

Feature selection techniques can be evaluated based on either model performance or the stability (robustness) of the technique. The ideal situation is to choose a feature selec- tion technique that is robust to change, while also ensuring that models built with the selected features perform well. One domain where feature selection is especially important is software defect prediction, where large numbers of met- rics collected from previous software projects are used to help engineers focus their efforts on the most faulty mod- ules. This study presents a comprehensive empirical ex- amination of seven filter-based feature ranking techniques (rankers) applied to …

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Using The Google Visualisation Api With R, Markus Gesmann, Diego De Castillo Dec 2011

Using The Google Visualisation Api With R, Markus Gesmann, Diego De Castillo

The R Journal

The googleVis package provides an interface between R and the Google Visualisation API to create interactive charts which can be embedded into web pages. The best known of these charts is probably the Motion Chart, popularised by Hans Rosling in his TED talks. With the googleVis package users can easily create web pages with interactive charts based on R data frames and display them either via the local R HTTPhelp server or within their own sites.

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Nonparametric Goodness-Of-Fit Tests For Discrete Null Distributions, Taylor B. Arnold, John W. Emerson Dec 2011

Nonparametric Goodness-Of-Fit Tests For Discrete Null Distributions, Taylor B. Arnold, John W. Emerson

The R Journal

Methodology extending nonparametric goodness-of-fit tests to discrete null distributions has existed for several decades. However, modern statistical software has generally failed to provide this methodology to users. We offer a revision of R’s ks.test() function and a new cvm.test() function that fill this need in the R language for two of the most popular nonparametric goodness-of-fit tests. This paper describes these contributions and provides examples of their usage. Particular attention is given to various numerical issues that arise in their implementation.

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Implementing The Compendium Concept With Sweave And Docstrip, Michael Lundholm Dec 2011

Implementing The Compendium Concept With Sweave And Docstrip, Michael Lundholm

The R Journal

This article suggests an implementation of the compendium concept by combining Sweave and the LATEX literate programming environment DOCSTRIP.

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Content-Based Social Network Analysis Of Mailing Lists, Angela Bohn, Ingo Feinerer, Kurt Hornik, Patrick Mair Dec 2011

Content-Based Social Network Analysis Of Mailing Lists, Angela Bohn, Ingo Feinerer, Kurt Hornik, Patrick Mair

The R Journal

Social Network Analysis (SNA) provides tools to examine relationships between people. Text Mining (TM) allows capturing the text they produce in Web 2.0 applications, for example, however it neglects their social structure. This paper applies an approach to combine the two methods named “content-based SNA”. Using the R mailing lists, R-help and R-devel, we show how this combination can be used to describe people’s interests and to find out if authors who have similar interests actually communicate. We find that the expected positive relationship between sharing interests and communicating gets stronger as the centrality scores of authors in the communication …

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Grapher: A Multiplatform Gui For Drawing Customizable Graphs In R, Maxime Hervé Dec 2011

Grapher: A Multiplatform Gui For Drawing Customizable Graphs In R, Maxime Hervé

The R Journal

This article presents GrapheR, a Graphical User Interface allowing the user to draw customizable and high-quality graphs without knowing any R commands. Six kinds of graph are available: histograms, box-and-whisker plots, bar plots, pie charts, curves and scatter plots. The complete process is described with the examples of a bar plot and a scatter plot illustrating the legendary puzzle of African and European swallows’ migrations.

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Ckmeans.1d.Dp: Optimal K-Means Clustering In One Dimension By Dynamic Programming, Haizhou Wang, Mingzhou Song Dec 2011

Ckmeans.1d.Dp: Optimal K-Means Clustering In One Dimension By Dynamic Programming, Haizhou Wang, Mingzhou Song

The R Journal

The heuristic k-means algorithm, widely used for cluster analysis, does not guarantee optimality. We developed a dynamic programming algorithm for optimal one-dimensional clustering. The algorithm is implemented as an R package called Ckmeans.1d.dp. We demonstrate its ad vantage in optimality and runtime over the standard iterative k-means algorithm.

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Watch Your Spelling!, Kurt Hornik, Duncan Murdoch Dec 2011

Watch Your Spelling!, Kurt Hornik, Duncan Murdoch

The R Journal

We discuss the facilities in base R for spell checking via Aspell, Hunspell or Ispell, which are useful in particular for conveniently checking the spelling of natural language texts in package Rd files and vignettes. Spell checking performance is illustrated using the Rd files in package stats. This example clearly indicates the need for a domain-specific statistical dictionary. We analyze the results of spell checking all Rd files in all CRAN packages and show how these can be employed for building such a dictionary.

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Quantifying Computer Network Security, Ian Burchett Dec 2011

Quantifying Computer Network Security, Ian Burchett

Masters Theses & Specialist Projects

Simplifying network security data to the point that it is readily accessible and usable by a wider audience is increasingly becoming important, as networks become larger and security conditions and threats become more dynamic and complex, requiring a broader and more varied security staff makeup. With the need for a simple metric to quantify the security level on a network, this thesis proposes: simplify a network’s security risk level into a simple metric. Methods for this simplification of an entire network’s security level are conducted on several characteristic networks. Identification of computer network port vulnerabilities from NIST’s Network Vulnerability Database …

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Developing Hybrid Approaches To Predict Pka Values Of Ionizable Groups, Shawn Witham, Kemper Talley, Lin Wang, Zhe Zhang, Daquan Gao, Wei Yang, Emil Alexov Dec 2011

Developing Hybrid Approaches To Predict Pka Values Of Ionizable Groups, Shawn Witham, Kemper Talley, Lin Wang, Zhe Zhang, Daquan Gao, Wei Yang, Emil Alexov

Publications

Accurate predictions of pKa values of titratable groups require taking into account all relevant processes associated with the ionization/deionization. Frequently, however, the ionization does not involve significant structural changes and the dominating effects are purely electrostatic in origin allowing accurate predictions to be made based on the electrostatic energy difference between ionized and neutral forms alone using a static structure. On another hand, if the change of the charge state is accompanied by a structural reorganization of the target protein, then the relevant conformational changes have to be taken into account in the pKa calculations. Here we report a hybrid …

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Progress In The Prediction Of Pka Values In Proteins, Emil Alexov, Ernest L. Mehler, Nathan Baker, Antonio Baptista, Yong Huang, Francesca Milletti, Jens Erik Nielsen, Damien Farrell, Tommy Carstensen, Mats H.M. Olsson, Jana K. Shen, Jim Warwicker, Sarah Williams, J Michael Word Dec 2011

Progress In The Prediction Of Pka Values In Proteins, Emil Alexov, Ernest L. Mehler, Nathan Baker, Antonio Baptista, Yong Huang, Francesca Milletti, Jens Erik Nielsen, Damien Farrell, Tommy Carstensen, Mats H.M. Olsson, Jana K. Shen, Jim Warwicker, Sarah Williams, J Michael Word

Publications

The pKa-cooperative aims to provide a forum for experimental and theoretical researchers interested in protein pKa values and protein electrostatics in general. The first round of the pKa-cooperative, which challenged computational labs to carry out blind predictions against pKas experimentally determined in the laboratory of Bertrand Garcia-Moreno, was completed and results discussed at the Telluride meeting (July 6–10, 2009). This article serves as an introduction to the reports submitted by the blind prediction participants that will be published in a special issue of PROTEINS: Structure, Function and Bioinformatics. …

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Achieving Laser Wavelength Stability For Use In Neutral Atom Quantum Computing, Jennifer H. Rushing Dec 2011

Achieving Laser Wavelength Stability For Use In Neutral Atom Quantum Computing, Jennifer H. Rushing

Physics

Quantum computing may still be decades away from realization but the pieces necessary for the construction of the first quantum chip are beginning to come together. One piece still eluding researchers is the ability to address individual atoms within a scalable quantum chip structure. The resolution to this issue may be found in any one of several promising implementations, including the use of neutral atoms trapped in 2D optical lattices. One method of constructing such lattices, which has been shown to be computationally viable, employs the diffraction pattern just behind a circular aperture. Laser wavelength stability plays a crucial role …

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Aerospace Section, Adrianne J. Washburn Dec 2011

Aerospace Section, Adrianne J. Washburn

Sci-Tech News

No abstract provided.

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A Secure And Distributed Framework To Identify And Share Needed Information, Wei Jiang, Bharath K. Samanthula Dec 2011

A Secure And Distributed Framework To Identify And Share Needed Information, Wei Jiang, Bharath K. Samanthula

Computer Science Faculty Research & Creative Works

Information analysis and communication play significant roles in decision making, especially in battle grounds and situations where national security is under threat. in many situations when information in consideration is sensitive/confidential, it is in our best interests to analyze and share only needed information to minimize the potential of security breach regarding other irrelevant but sensitive information. Thus, the goal of this paper is to investigate the required methodologies and propose an advanced communication framework that enables different entities in distributed environments to identify, share and analyze only needed information, without disclosing other unwanted but sensitive information. Such a framework …

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Scaling Laws Of Key Predistribution Protocols In Wireless Sensor Networks, Wenjun Gu, Sriram Chellappan, Xiaole Bai, Honggang Wang Dec 2011

Scaling Laws Of Key Predistribution Protocols In Wireless Sensor Networks, Wenjun Gu, Sriram Chellappan, Xiaole Bai, Honggang Wang

Computer Science Faculty Research & Creative Works

Many key predistribution (KP) protocols have been proposed and are well accepted in randomly deployed wireless sensor networks (WSNs). Being distributed and localized, they are perceived to be scalable as node density and network dimension increase. While it is true in terms of communication/computation overhead, their scalability in terms of security performance is unclear. in this paper, we conduct a detailed study on this issue. in particular, we define a new metric called Resilient Connectivity (RC) to quantify security performance in WSNs. We then conduct a detailed analytical investigation on how KP protocols scale with respect to node density and …

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Exploring Caching For Efficient Collection Operations, Swetha Surapaneni, Venkata Krishna Suhas Nerella, Sanjay K. Madria, Thomas Weigert Dec 2011

Exploring Caching For Efficient Collection Operations, Swetha Surapaneni, Venkata Krishna Suhas Nerella, Sanjay K. Madria, Thomas Weigert

Computer Science Faculty Research & Creative Works

Many useful programs operate on collection types. Extensive libraries are available in many programming languages, such as the C++ Standard Template Library, which make programming with collections convenient. Extending programming languages to provide collection queries as first class constructs in the language would not only allow programmers to write queries explicitly in their programs but it would also allow compilers to leverage the wealth of experience available from the database domain to optimize such queries. This paper describes an approach to reducing the run time of programs involving explicit collection queries by leveraging a cache to store previously computed results. …

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Object Recognition Based On Shape And Function, Akihiro Eguchi Dec 2011

Object Recognition Based On Shape And Function, Akihiro Eguchi

Computer Science and Computer Engineering Undergraduate Honors Theses

This thesis explores a new approach to computational object recognition by borrowing an idea from child language acquisition studies in developmental psychology. Whereas previous image recognition research used shape to recognize and label a target object, the model proposed in this thesis also uses the function of the object resulting in a more accurate recognition. This thesis makes use of new gaming technology, Microsoft’s Kinect, in implementing the proposed new object recognition model. A demonstration of the model developed in this project properly infers different names for similarly shaped objects and the same name for differently shaped objects.

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Land Systems Of The Kimberley Region, Western Australia, A L. Payne, N Schoknecht Dec 2011

Land Systems Of The Kimberley Region, Western Australia, A L. Payne, N Schoknecht

Technical Bulletins

The Land Systems of the Kimberley Region Report describes and maps the landscapes, soils and vegetation of the Kimberley region. This report is a consolidation of surveys carried out by different organisations, across different areas of the Kimberley, since the 1940s. The Kimberley region, as defined in this bulletin, covers 330 070km². The report categorises the Kimberley region into 111 land systems. Under each land system, the report identifies the vulnerabilities of those areas, and provides recommendations on how to achieve sustainable use. The report also publishes pasture types for the entire region and the grazing potential for each pasture, …

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Groundwater Chemistry Of The Weaber Plain: Preliminary Results, Adam Lillicrap, Paul Raper, Richard J. George Dr, D L. Bennett Dec 2011

Groundwater Chemistry Of The Weaber Plain: Preliminary Results, Adam Lillicrap, Paul Raper, Richard J. George Dr, D L. Bennett

Resource management technical reports

In 2008, the Ord Irrigation Expansion Project was approved by the Western Australian Government to develop irrigated agriculture on the Weaber Plain. Construction of the M2 supply channel connecting the ORIA and the Weaber Plain, and the final period of irrigation design, environmental management and related approval processes, commenced later in 2009. This process followed a protracted period of public and private industry planning and environmental assessment (Kinhill 2000). This report summarises an analysis of groundwater salinity trends on the Ivanhoe and Weaber plains and the preliminary results of an intensive water-quality sampling program carried out in 2010 as part …

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Spatial Analysis Of Fatal Automobile Crashes In Kentucky, William Nathan Oris Dec 2011

Spatial Analysis Of Fatal Automobile Crashes In Kentucky, William Nathan Oris

Masters Theses & Specialist Projects

Fatal automobile crashes have claimed the lives of over 33,000 people each year in the United States since 1995. As in any point event, fatal crash events do not occur randomly in time or space. The objectives of this study were to identify spatial patterns and hot spots in FARS (Fatal Analysis Reporting System) fatal crash events based on temporal and demographic characteristics. The methods employed included 1) rate calculation using FARS points and average daily traffic flow; 2) planar kernel density estimation of FARS crash events based on temporal and demographic attributes within the data; and 3) two case …

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Distribution Of Trace Elements In Cumberland River Basin Reservoir Sediments, Laura Mahoney Benneyworth Dec 2011

Distribution Of Trace Elements In Cumberland River Basin Reservoir Sediments, Laura Mahoney Benneyworth

Masters Theses & Specialist Projects

The U.S. Army Corps of Engineers, Nashville District, maintains ten reservoirs in the Cumberland River Basin in Kentucky and Tennessee, and has been monitoring sediment chemistry in the reservoirs since 1994. The purpose of this study is to evaluate the sediment data collected from the reservoirs from 1994 to 2010 to determine if there are any spatial patterns of the trace elements: arsenic, beryllium, cadmium, chromium, copper, lead, mercury, nickel, and zinc. The results indicated that trace element levels were consistent with national baseline concentrations measured by the U.S. Geological Survey. Center Hill reservoir had the greatest number of trace …

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Multiple Storm Event Impacts On Epikarst Storage And Transport Of Organic Soil Amendments In South-Central Kentucky, Sean M. Vanderhoff Dec 2011

Multiple Storm Event Impacts On Epikarst Storage And Transport Of Organic Soil Amendments In South-Central Kentucky, Sean M. Vanderhoff

Masters Theses & Specialist Projects

The groundwater in agricultural karst areas is susceptible to contamination from organic soil amendments and pesticides. During major storm events during 2011, dye traces were initiated using sulphorhodamine-B, fluorescein and eosine in a groundwater recharge area where manure was applied to the ground. Fecal coliform samples were collected from significant storm events from January-September 2011. Water samples and geochemical data were collected every four hours before, during, and between the storm events from a waterfall in Crumps cave flowing from the known recharge area to track the transport and residence time of the epikarst water and organic soil amendments during …

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Sensitivity Of The Frozen/Melted Basal Boundary To Perturbations Of Basal Traction And Geothermal Heat Flux : Isunnguata Sermia, Western Greenland, Douglas John Brinkerhoff, Toby Warren Meierbachtol, Jesse Johnson, Joel T. Harper Dec 2011

Sensitivity Of The Frozen/Melted Basal Boundary To Perturbations Of Basal Traction And Geothermal Heat Flux : Isunnguata Sermia, Western Greenland, Douglas John Brinkerhoff, Toby Warren Meierbachtol, Jesse Johnson, Joel T. Harper

Computer Science Faculty Publications

A full-stress, thermomechanically coupled, numerical model is used to explore the interaction between basal thermal conditions and motion of a terrestrially terminating section of the west Greenland ice sheet. The model domain is a two-dimensional flowline profile extending from the ice divide to the margin. We use data-assimilation techniques based on the adjoint model in order to optimize the basal traction field, minimizing the difference between modeled and observed surface velocities. We monitor the sensitivity of the frozen/melted boundary (FMB) to changes in prescribed geothermal heat flux and sliding speed by applying perturbations to each of these parameters. The FMB …

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Modeling 5 Years Of Subglacial Lake Activity In The Macayeal Ice Stream (Antarctica) Catchment Through Assimilation Of Icesat Laser Altimetry, Sasha P. Carter, Helen A. Fricker, Donald D. Blankenship, Jesse V. Johnson, William Lipscomb, Stephen F. Price, Duncan A. Young Dec 2011

Modeling 5 Years Of Subglacial Lake Activity In The Macayeal Ice Stream (Antarctica) Catchment Through Assimilation Of Icesat Laser Altimetry, Sasha P. Carter, Helen A. Fricker, Donald D. Blankenship, Jesse V. Johnson, William Lipscomb, Stephen F. Price, Duncan A. Young

Computer Science Faculty Publications

Subglacial lakes beneath Antarctica’s fast-moving ice streams are known to undergo ~1km3 volume changes on annual timescales. Focusing on the MacAyeal Ice Stream (MacIS) lake system, we create a simple model for the response of subglacial water distribution to lake discharge events through assimilation of lake volume changes estimated from Ice, Cloud and land Elevation Satellite (ICESat) laser altimetry. We construct a steady-state water transport model in which known subglacial lakes are treated as either sinks or sources depending on the ICESat-derived filling or drainingrates. The modeled volume change rates of five large subglacial lakes in the downstream portion …

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Fast Super-Resolution With Affine Motion Using An Adaptive Wiener Filter And Its Application To Airborne Imaging, Russell C. Hardie, Kenneth J. Barnard, Raúl Ordóñez Dec 2011

Fast Super-Resolution With Affine Motion Using An Adaptive Wiener Filter And Its Application To Airborne Imaging, Russell C. Hardie, Kenneth J. Barnard, Raúl Ordóñez

Electrical and Computer Engineering Faculty Publications

Fast nonuniform interpolation based super-resolution (SR) has traditionally been limited to applications with translational interframe motion. This is in part because such methods are based on an underlying assumption that the warping and blurring components in the observation model commute. For translational motion this is the case, but it is not true in general. This presents a problem for applications such as airborne imaging where translation may be insufficient. Here we present a new Fourier domain analysis to show that, for many image systems, an affine warping model with limited zoom and shear approximately commutes with the point spread function …

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Personality Dimensions And Temperaments Of Engineering Professors And Students – A Survey, Arif Raza, Zaka Ulmustafa, Luiz Fernando Capretz Dec 2011

Personality Dimensions And Temperaments Of Engineering Professors And Students – A Survey, Arif Raza, Zaka Ulmustafa, Luiz Fernando Capretz

Electrical and Computer Engineering Publications

This research work aims to study personality profiles and temperaments of Pakistani software engineering professors and students. In this survey we have collected personality profiles of 18 professors and 92 software engineering students. According to the Myers-Briggs Type Indicator (MBTI) instrument, the most prominent personality type among professors as well as among students is a combination of Introversion, Sensing, Thinking, and Judging (ISTJ). The study shows ITs (Introverts and Thinking) and IJs (Introverts and Judging) are the leading temperaments among the professors. About the students’ data, the results of the study indicate SJs (Sensing and Judging) and ISs (Introverts and …

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Dynamic Server Allocation At Parallel Queues, Susan E. Martonosi Dec 2011

Dynamic Server Allocation At Parallel Queues, Susan E. Martonosi

All HMC Faculty Publications and Research

We explore whether dynamically reassigning servers to parallel queues in response to queue imbalances can reduce average waiting time in those queues. We use approximate dynamic programming methods to determine when servers should be switched, and we compare the performance of such dynamic allocations to that of a pre-scheduled deterministic allocation. Testing our method on both synthetic data and data from airport security checkpoints at Boston Logan International Airport, we find that in situations where the uncertainty in customer arrival rates is significant, dynamically reallocating servers can substantially reduce waiting time. Moreover, we find that intuitive switching strategies that are …

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