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Faculty Publications

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Full-Text Articles in Physical Sciences and Mathematics

Enhanced Structural Control Of Soft-Templated Mesoporous Inorganic Thin Films By Inert Processing Conditions, Maximilliano Jesus Jara Fornerod, Alberto Alvarez-Fernandez, Eric R. Williams, Miximillian W.A. Skoda, Beatriz Prieto-Simon, Nicolas H. Voelcker, Morgan Stefik, Marc-Oliver Coppens, Stefan Guldin Dec 2022

Enhanced Structural Control Of Soft-Templated Mesoporous Inorganic Thin Films By Inert Processing Conditions, Maximilliano Jesus Jara Fornerod, Alberto Alvarez-Fernandez, Eric R. Williams, Miximillian W.A. Skoda, Beatriz Prieto-Simon, Nicolas H. Voelcker, Morgan Stefik, Marc-Oliver Coppens, Stefan Guldin

Faculty Publications

Mesoporous thin films are widely used for applications in need of high surface area and efficient mass and charge transport properties. A well-established fabrication process involves the supramolecular assembly of organic molecules (e.g., block copolymers and surfactants) with inorganic materials obtained by sol-gel chemistry. Typically, subsequent calcination in air removes the organic template and reveals the porous inorganic network. A significant challenge for such coatings is the anisotropic shrinkage due to the volume contraction related to solvent evaporation, inorganic condensation, and template removal, affecting the final porosity as well as pore shape, size, arrangement, and accessibility. Here, we show that …


Effects Of A Behavioral Intervention On Physical Activity, Diet, And Health-Related Quality Of Life In Pregnant Women With Elevated Weight: Results Of The Hipp Randomized Controlled Trial, Sarah Wilcox Phd, Jihong Liu, Gabrielle Turner-Mcgrievy Ph.D., Rd, Alycia K. Boutte, Ellen Wingard Msph, Rd, Ld Dec 2022

Effects Of A Behavioral Intervention On Physical Activity, Diet, And Health-Related Quality Of Life In Pregnant Women With Elevated Weight: Results Of The Hipp Randomized Controlled Trial, Sarah Wilcox Phd, Jihong Liu, Gabrielle Turner-Mcgrievy Ph.D., Rd, Alycia K. Boutte, Ellen Wingard Msph, Rd, Ld

Faculty Publications

Background

Physical activity (PA), diet, and health-related quality of life (HRQOL) are related to maternal and infant health, but interventions to improve these outcomes are needed in diverse pregnant women with elevated weight.

Methods

Health In Pregnancy and Postpartum (HIPP) was a randomized controlled trial. Women who were pregnant (N=219, 44% African American, 56% white) with overweight or obesity but otherwise healthy were randomized to a behavioral intervention grounded in Social Cognitive Theory (n=112) or to standard care (n=107). The intervention group received an in-depth counseling session, a private Facebook group, and 10 content-based …


Diversifying And Perennializing Plants In Agroecosystems Alters Retention Of New C And N From Crop Residues, Marshall D. Mcdaniel, Jeffrey A. Bird, Jennifer Pett-Ridge, Erika Marin-Spiotta, Tom M. Schmidt, A. Stuart Grandy Dec 2022

Diversifying And Perennializing Plants In Agroecosystems Alters Retention Of New C And N From Crop Residues, Marshall D. Mcdaniel, Jeffrey A. Bird, Jennifer Pett-Ridge, Erika Marin-Spiotta, Tom M. Schmidt, A. Stuart Grandy

Faculty Publications

Managing soils to retain new plant inputs is key to moving toward a sustainable and regenerative agriculture. Management practices, like diversifying and perennializing agroecosystems, may affect the decomposer organisms that regulate how new residue is converted to persistent soil organic matter. Here we tested whether 12 years of diversifying/perennializing plants in agroecosystems through extended rotations or grassland restoration would decrease losses of new plant residue inputs and, thus, increase retention of carbon (C) and nitrogen (N) in soil. We tracked dual-labeled (13C and 15N), isotopically enriched wheat (Triticum aestivum) residue in situ for 2 years as it decomposed in three …


Resilience Monitoring For Multi-Filter All-Source Navigation Framework With Assurance, Jonathon S. Gipson, Robert C. Leishman Dec 2022

Resilience Monitoring For Multi-Filter All-Source Navigation Framework With Assurance, Jonathon S. Gipson, Robert C. Leishman

Faculty Publications

The Autonomous and Resilient Management of All-source Sensors (ARMAS) framework monitors residual-space test statistics across unique sensor-exclusion banks of filters (known as subfilters) to provide a resilient, fault-resistant all-source navigation architecture with assurance. A critical assumption of this architecture, demonstrated in this paper, is fully overlapping state observability across all subfilters. All-source sensors, particularly those that only provide partial state information (altimeters, TDoA, AOB, etc.), do not intrinsically meet this requirement. This paper presents a novel method to monitor real-time overlapping position state observability and introduces an observability bank within the ARMAS framework, known as stable observability monitoring (SOM). SOM …


Us Scientific Leadership Addressing Energy, Ecosystems, Climate, And Sustainable Prosperity: Report In Brief From The Berac Subcommittee On International Benchmarking, Maureen Mccann, Patrick Reed, Ana Alonso, Ludmilla Aristilde, Massie S. Ballon, Crysten Blaby, Allison A. Campbell, Kenneth James Davis, Brian H. Davison, Ben Evans, Robert F. Fischetti, Serita D. Frey, Ann M. Fridlind, Efi Foufoula-Georgiou, Ramon Gonzalez, Michael N. Gooseff, Nathan Hillson, Janet Jansson, Klaus Keller, Markus Kleber, Costas Maranas, Gerald A. Meehl, Himadri Pakrasi, Jennifer Pett-Ridge, Kristala Prather, Johannes Quaas, G. Philip Robertson, Alistair Rogers, Tim Scheibe, Thomas R. Schneider, Gary Stacey, Margaret S. Torn, Kerstin Kleese Van Dam, Detlef Vuuren, John Weyant, Stan Wullschleger, Shaocheng Xie, Seung Yon (Sue) Rhee, Huimin Zhao Dec 2022

Us Scientific Leadership Addressing Energy, Ecosystems, Climate, And Sustainable Prosperity: Report In Brief From The Berac Subcommittee On International Benchmarking, Maureen Mccann, Patrick Reed, Ana Alonso, Ludmilla Aristilde, Massie S. Ballon, Crysten Blaby, Allison A. Campbell, Kenneth James Davis, Brian H. Davison, Ben Evans, Robert F. Fischetti, Serita D. Frey, Ann M. Fridlind, Efi Foufoula-Georgiou, Ramon Gonzalez, Michael N. Gooseff, Nathan Hillson, Janet Jansson, Klaus Keller, Markus Kleber, Costas Maranas, Gerald A. Meehl, Himadri Pakrasi, Jennifer Pett-Ridge, Kristala Prather, Johannes Quaas, G. Philip Robertson, Alistair Rogers, Tim Scheibe, Thomas R. Schneider, Gary Stacey, Margaret S. Torn, Kerstin Kleese Van Dam, Detlef Vuuren, John Weyant, Stan Wullschleger, Shaocheng Xie, Seung Yon (Sue) Rhee, Huimin Zhao

Faculty Publications

This document presents the subcommittee’s overarching and domain-specific findings and recommendations for the next decade, identified by consensus across the full BERAC subcommittee and experts interviewed for this assessment.


A Statistical Analysis Of Sporadic-E Characteristics Associated With Gnss Radio Occultation Phase And Amplitude Scintillations, Daniel J. Emmons, Dong L. Wu, Nimalan Swarnalingam Dec 2022

A Statistical Analysis Of Sporadic-E Characteristics Associated With Gnss Radio Occultation Phase And Amplitude Scintillations, Daniel J. Emmons, Dong L. Wu, Nimalan Swarnalingam

Faculty Publications

Statistical GNSS-RO measurements of phase and amplitude scintillation are analyzed at the mid-latitudes in the local summer for a 100 km altitude. These conditions are known to contain frequent sporadic-E, and the S4-σϕ trends provide insight into the statistical distributions of the sporadic-E parameters. Joint two-dimensional S4-σϕ histograms are presented, showing roughly linear trends until the S4 saturates near 0.8. To interpret the measurements and understand the sporadic-E contributions, 10,000 simulations of RO signals perturbed by sporadic-E layers are performed using length, intensity, and vertical thickness distributions from previous studies, with the assumption that the sporadic-E layer acts …


Global Sporadic-E Occurrence Rate Climatology Using Gps Radio Occultation And Ionosonde Data, Travis J. Hodos, Omar A. Nava, Eugene V. Dao, Daniel J. Emmons Dec 2022

Global Sporadic-E Occurrence Rate Climatology Using Gps Radio Occultation And Ionosonde Data, Travis J. Hodos, Omar A. Nava, Eugene V. Dao, Daniel J. Emmons

Faculty Publications

An updated global climatology of blanketing sporadic E (Es) is developed from a combined data set of Global Positioning System (GPS) radio occultation (RO) and ground-based ionosonde soundings over the period of September 2006–January 2019. A total of 46 sites and 3.2 million total soundings from the Global Ionosphere Radio Observatory network in combination with 3.0 million occultations from the Constellation Observing System for Meteorology, Ionosphere, and Climate constellation are used to calculate global occurrence rates (ORs) for two blanketing frequency thresholds: all blanketing sporadic-E with no limit on intensity (all-Es) and moderate-Es with fbEs …


Substrate Availability And Not Thermal Acclimation Controls Microbial Temperature Sensitivity Response To Long-Term Warming, Luiz A. Domeignoz-Horta, Grace Pold, Hailey Erb, David Sebag, Eric Verrecchia, Trent Northen, Katherine Louie, Emiley Eloe-Fadrosh, Christa Pennacchio, Melissa A. Knorr, Serita D. Frey, Jerry M. Melillo, Kristen M. Deangelis Nov 2022

Substrate Availability And Not Thermal Acclimation Controls Microbial Temperature Sensitivity Response To Long-Term Warming, Luiz A. Domeignoz-Horta, Grace Pold, Hailey Erb, David Sebag, Eric Verrecchia, Trent Northen, Katherine Louie, Emiley Eloe-Fadrosh, Christa Pennacchio, Melissa A. Knorr, Serita D. Frey, Jerry M. Melillo, Kristen M. Deangelis

Faculty Publications

Microbes are responsible for cycling carbon (C) through soils, and predicted changes in soil C stocks under climate change are highly sensitive to shifts in the mechanisms assumed to control the microbial physiological response to warming. Two mechanisms have been suggested to explain the long-term warming impact on microbial physiology: microbial thermal acclimation and changes in the quantity and quality of substrates available for microbial metabolism. Yet studies disentangling these two mechanisms are lacking. To resolve the drivers of changes in microbial physiology in response to long-term warming, we sampled soils from 13- and 28-year-old soil warming experiments in different …


Implementing Just Climate Adaptation Policy: An Analysis Of Recognition, Framing, And Advocacy Coalitions In Boston, U.S.A., Jeffrey T. Malloy, Catherine Ashcraft, Paul Kirshen, Thomas G. Safford, Semra Aytur, Shannon H. Rogers Nov 2022

Implementing Just Climate Adaptation Policy: An Analysis Of Recognition, Framing, And Advocacy Coalitions In Boston, U.S.A., Jeffrey T. Malloy, Catherine Ashcraft, Paul Kirshen, Thomas G. Safford, Semra Aytur, Shannon H. Rogers

Faculty Publications

Cities face intersectional challenges implementing climate adaptation policy. This research contributes to scholarship dedicated to understanding how policy implementation affects socially vulnerable groups, with the overarching goal of promoting justice and equity in climate policy implementation. We apply a novel framework that integrates social justice theory and the advocacy coalition framework to incrementally assess just climate adaptation in Boston, Massachusetts in the United States. Boston made an ambitious commitment to address equity as part of its climate planning and implementation efforts. In this paper, we evaluate the first implementation stage over the period 2016–2019 during which Boston developed coastal resilience …


Cold Atoms In Space: Community Workshop Summary And Proposed Road-Map, Iván Alonso, Cristiano Alpigiani, Brett David Altschul, Henrique Araújo, Gianluigi Arduini, Jan Arlt, Leonardo Badurina, Antun Balaž, Satvika Bandarupally, Barry C. Barish, Michele Barone, Michele Barsanti, Steven Bass, Angelo Bassi, Baptiste Battelier, Charles F. A. Baynham, Quentin Beaufils, Aleksandar Belić, Joel Bergé, Jose Bernabeu, Et. Al. Nov 2022

Cold Atoms In Space: Community Workshop Summary And Proposed Road-Map, Iván Alonso, Cristiano Alpigiani, Brett David Altschul, Henrique Araújo, Gianluigi Arduini, Jan Arlt, Leonardo Badurina, Antun Balaž, Satvika Bandarupally, Barry C. Barish, Michele Barone, Michele Barsanti, Steven Bass, Angelo Bassi, Baptiste Battelier, Charles F. A. Baynham, Quentin Beaufils, Aleksandar Belić, Joel Bergé, Jose Bernabeu, Et. Al.

Faculty Publications

We summarise the discussions at a virtual Community Workshop on Cold Atoms in Space concerning the status of cold atom technologies, the prospective scientific and societal opportunities offered by their deployment in space, and the developments needed before cold atoms could be operated in space. The cold atom technologies discussed include atomic clocks, quantum gravimeters and accelerometers, and atom interferometers. Prospective applications include metrology, geodesy and measurement of terrestrial mass change due to, e.g., climate change, and fundamental science experiments such as tests of the equivalence principle, searches for dark matter, measurements of gravitational waves and tests of quantum mechanics. …


Laboratory Evaluation And Field Feasibility Of Micro-Encapsulated Insecticide Effect On Rhodnius Prolixus And Triatoma Dimidiata Mortality In Rural Households In Boyaca, Colombia, Lidia Gual-Gonzalez, Manuel Medina, Cesar Valverde-Castro, Virgilio Beltran, Rodrigo Caro, Omar Triana-Chavez, Melissa Nolan Ph.D., Mph, Omar Cantillo-Barraza Nov 2022

Laboratory Evaluation And Field Feasibility Of Micro-Encapsulated Insecticide Effect On Rhodnius Prolixus And Triatoma Dimidiata Mortality In Rural Households In Boyaca, Colombia, Lidia Gual-Gonzalez, Manuel Medina, Cesar Valverde-Castro, Virgilio Beltran, Rodrigo Caro, Omar Triana-Chavez, Melissa Nolan Ph.D., Mph, Omar Cantillo-Barraza

Faculty Publications

Chagas disease is a neglected vector-borne zoonosis caused by the parasite Trypanosoma cruzi that is primarily transmitted by insects of the subfamily Triatominae. Although control efforts targeting domestic infestations of Rhodnius prolixus have been largely successful, with several regions in Boyacá department certified free of T. cruzi transmission by intradomicile R. prolixus, novel native species are emerging, increasing the risk of disease. Triatoma dimidiata is the second most important species in Colombia, and conventional control methods seem to be less effective. In this study we evaluated the efficacy and usefulness of micro-encapsulated insecticide paints in laboratory conditions and its …


Helium Nanodroplets As An Efficient Tool To Investigate Hydrogen Attachment To Alkali Cations, Siegfried Kollotzek, José Campos-Martínez, Massimiliano Bartolomei, Fernando Pirani, Lukas Tiefenthaler, Marta I. Hernández, Teresa Lázaro, Eva Zunzunegui-Bru, Tomás González-Lezana, José Bretón, Javier Hernández-Rojas, Olof E. Echt, Paul Scheier Nov 2022

Helium Nanodroplets As An Efficient Tool To Investigate Hydrogen Attachment To Alkali Cations, Siegfried Kollotzek, José Campos-Martínez, Massimiliano Bartolomei, Fernando Pirani, Lukas Tiefenthaler, Marta I. Hernández, Teresa Lázaro, Eva Zunzunegui-Bru, Tomás González-Lezana, José Bretón, Javier Hernández-Rojas, Olof E. Echt, Paul Scheier

Faculty Publications

We report a novel method to reversibly attach and detach hydrogen molecules to positively charged sodium clusters formed inside a helium nanodroplet host matrix. It is based on the controlled production of multiply charged helium droplets which, after picking up sodium atoms and exposure to H2 vapor, lead to the formation of Nam+(H2)n clusters, whose population was accurately measured using a time-of-flight mass spectrometer. The mass spectra reveal particularly favorable Na+(H2)n and Na2+(H2)n clusters for specific “magic” numbers of attached hydrogen molecules. …


Soil Microbial Communities Vary In Composition And Functional Strategy Across Soil Aggregate Size Class Regardless Of Tillage, Lukas T. Bernhardt, Richard G. Smith, Andrew S. Grandy, Jessica E. Mackay, Nicholas D. Warren, Kevin M. Geyer, Jessica G. Ernakovich Nov 2022

Soil Microbial Communities Vary In Composition And Functional Strategy Across Soil Aggregate Size Class Regardless Of Tillage, Lukas T. Bernhardt, Richard G. Smith, Andrew S. Grandy, Jessica E. Mackay, Nicholas D. Warren, Kevin M. Geyer, Jessica G. Ernakovich

Faculty Publications

The physicochemical environment within aggregates controls the distribution of carbon and microbial communities in soils. Agricultural management, such as tillage, can disrupt aggregates and the microscale habitat provided to microorganisms, thus altering microbial community dynamics. Categorizing microbial communities into life history strategies with shared functional traits—as has been done to understand plant community structure for decades—can illuminate how the soil physicochemical environment constrains the membership and activity of microbial communities. We conducted an aggregate scale survey of microbial community composition and function through the lens of the yield–acquisition–stress (Y–A–S) tolerator life history framework. Soils collected from a 7-year tillage experiment …


All-Sky Search For Short Gravitational-Wave Bursts In The Third Advanced Ligo And Advanced Virgo Run, Ligo Scientific Collaboration, Virgo Collaboration, Kagra Collaboration, Tiffany Z. Summerscales Nov 2022

All-Sky Search For Short Gravitational-Wave Bursts In The Third Advanced Ligo And Advanced Virgo Run, Ligo Scientific Collaboration, Virgo Collaboration, Kagra Collaboration, Tiffany Z. Summerscales

Faculty Publications

After the detection of gravitational waves from compact binary coalescences, the search for transient gravitational-wave signals with less well-defined waveforms for which matched filtering is not well suited is one of the frontiers for gravitational-wave astronomy. Broadly classified into “short” ≲1  s and “long” ≳1  s duration signals, these signals are expected from a variety of astrophysical processes, including non-axisymmetric deformations in magnetars or eccentric binary black hole coalescences. In this work, we present a search for long-duration gravitational-wave transients from Advanced LIGO and Advanced Virgo’s third observing run from April 2019 to March 2020. For this search, we use …


Training Rbf Neural Networks For The Solution Of Elliptic Boundary Value Problems, Andreas Karageorghis, C.S. Chen Nov 2022

Training Rbf Neural Networks For The Solution Of Elliptic Boundary Value Problems, Andreas Karageorghis, C.S. Chen

Faculty Publications

We propose a radial basis function (RBF) neural network method for solving two- and three–dimensional second and fourth order elliptic boundary value problems (BVPs). The neural network in question is trained by minimizing a nonlinear least squares functional, thus determining the optimal values of the various RBF parameters involved. The functional minimization is carried out using standard MATLAB® software efficiently. Several numerical experiments are presented to demonstrate the efficacy of the proposed method.


Transition-Metal Ions In Β-Ga2O3 Crystals: Identification Of Ni Acceptors, Timothy D. Gustafson, Nancy C. Giles, Brian C. Holloway, J. Jesenovec, B. L. Dutton, M. D. Mccluskey, Larry E. Halliburton Nov 2022

Transition-Metal Ions In Β-Ga2O3 Crystals: Identification Of Ni Acceptors, Timothy D. Gustafson, Nancy C. Giles, Brian C. Holloway, J. Jesenovec, B. L. Dutton, M. D. Mccluskey, Larry E. Halliburton

Faculty Publications

Excerpt: Transition-metal ions (Ni, Cu, and Zn) in β-Ga2O3 crystals form deep acceptor levels in the lower half of the bandgap. In the present study, we characterize the Ni acceptors in a Czochralski-grown crystal and find that their (0/−) level is approximately 1.40 eV above the maximum of the valence band.


A Molecular Chemodosimeter To Probe “Closed Shell” Ions In Kidney Cells, Rashid Mia Nov 2022

A Molecular Chemodosimeter To Probe “Closed Shell” Ions In Kidney Cells, Rashid Mia

Faculty Publications

Two quinidine-functionalized coumarin molecular probes have been synthesized and have been found to bind metal cations (Cd2+, Co2+, Cu2+, Fe2+, Hg2+, Ni2+, and Zn2+) with high affinity in organic–aqueous media (DMSO–HEPES). The chemodosimeters coordinate with the Zn2+ ions in a two-to-one ratio (molecular probe : Zn2+) with a log β of 10.0 M−2. Upon the addition of the closed-shell metal ions studied, a fluorescence turn-on via an excimer formation is seen at 542 nm due to the quinaldine moiety adopting a syn arrangement when coordinated to the metal Zn2+ ions. Confocal microscopy monitored free Zn2+ ions in the Human Embryonic …


Believing The Unbelievable: A Universe Of Miracles, Anthony Bosman Nov 2022

Believing The Unbelievable: A Universe Of Miracles, Anthony Bosman

Faculty Publications

No abstract provided.


The Dietary Inflammatory Index Is Associated With Subclinical Mastitis In Lactating European Women, Myriam C. Afeiche, Alison Iroz, Frank Thielecke, Antoino C. De Castro, Gregory Lefebvre, Colleen F. Draper, Cecilia Martiínez-Costa, Maria Jose Costeira, Mireille Vanpee, Claude Billeaud, Jean-Charles Picaud, Daryl Lim Kah Hian, Guimei Liu, Nitin Shivappa Mbbs, Mph, Ph.D., James Hébert Scd, Tinu M. Samuel Nov 2022

The Dietary Inflammatory Index Is Associated With Subclinical Mastitis In Lactating European Women, Myriam C. Afeiche, Alison Iroz, Frank Thielecke, Antoino C. De Castro, Gregory Lefebvre, Colleen F. Draper, Cecilia Martiínez-Costa, Maria Jose Costeira, Mireille Vanpee, Claude Billeaud, Jean-Charles Picaud, Daryl Lim Kah Hian, Guimei Liu, Nitin Shivappa Mbbs, Mph, Ph.D., James Hébert Scd, Tinu M. Samuel

Faculty Publications

Subclinical mastitis (SCM) is an inflammatory state of the lactating mammary gland, which is asymptomatic and may have negative consequences for child growth. The objectives of this study were to: (1) test the association between the dietary inflammatory index (DII®) and SCM and (2) assess the differences in nutrient intakes between women without SCM and those with SCM. One hundred and seventy-seven women with available data on human milk (HM) sodium potassium ratio (Na:K) and dietary intake data were included for analysis. Multivariable logistic regression was used to examine the association between nutrient intake and the DII score in relation …


Long-Distance Propagation Of 162 Mhz Shipping Information Links Associated With Sporadic E, Alex T. Chartier, Thomas R. Hanley, Daniel J. Emmons Nov 2022

Long-Distance Propagation Of 162 Mhz Shipping Information Links Associated With Sporadic E, Alex T. Chartier, Thomas R. Hanley, Daniel J. Emmons

Faculty Publications

This is a study of anomalous long-distance (>1000 km) radio propagation that was identified in United States Coast Guard monitors of automatic identification system (AIS) shipping transmissions at 162 MHz. Our results indicate this long-distance propagation is caused by dense sporadic E layers in the daytime ionosphere, which were observed by nearby ionosondes at the same time. This finding is surprising because it indicates these sporadic E layers may be far more dense than previously thought.


Aspects Of The Equivalence Between The FΜ And C Vμ Terms In Lorentz-Violating Quantum Field Theory, Sapan Karki, Brett David Altschul Nov 2022

Aspects Of The Equivalence Between The FΜ And C Vμ Terms In Lorentz-Violating Quantum Field Theory, Sapan Karki, Brett David Altschul

Faculty Publications

It is known that in Lorentz-violating effective field theory, there is a classical equivalence between certain coefficients (c and f), in spite of the fact that the operators of the two types of coefficients described appear to have opposite behaviors under CPT. This paper is a continuation of previous work extending this equivalence to the quantum level: generalizing the explicit spinorial point transformations that interconvert the c and f terms; demonstrating that the transformations do not give rise to any additional anomaly terms as the quantum level; and giving explicit prescriptions for modifying the C, P, and T operators in …


An Autoencoder-Based Deep Learning Method For Genotype Imputation, Meng Song, Jonathan Greenbaum, Joseph Luttrell Iv, Weihua Zhou, Chong Wu, Zhe Luo, Chuan Qiu, Lan Juan Zhao, Kuan-Jui Su, Qing Tian, Hui Shen, Huixiao Hong, Ping Gong, Xinghua Shi, Hong-Wen Deng, Chaoyang Zhang Nov 2022

An Autoencoder-Based Deep Learning Method For Genotype Imputation, Meng Song, Jonathan Greenbaum, Joseph Luttrell Iv, Weihua Zhou, Chong Wu, Zhe Luo, Chuan Qiu, Lan Juan Zhao, Kuan-Jui Su, Qing Tian, Hui Shen, Huixiao Hong, Ping Gong, Xinghua Shi, Hong-Wen Deng, Chaoyang Zhang

Faculty Publications

Genotype imputation has a wide range of applications in genome-wide association study (GWAS), including increasing the statistical power of association tests, discovering trait-associated loci in meta-analyses, and prioritizing causal variants with fine-mapping. In recent years, deep learning (DL) based methods, such as sparse convolutional denoising autoencoder (SCDA), have been developed for genotype imputation. However, it remains a challenging task to optimize the learning process in DL-based methods to achieve high imputation accuracy. To address this challenge, we have developed a convolutional autoencoder (AE) model for genotype imputation and implemented a customized training loop by modifying the training process with a …


On A Prior Based On The Wasserstein Information Matrix, Wuchen Li, F. J. Rubio Nov 2022

On A Prior Based On The Wasserstein Information Matrix, Wuchen Li, F. J. Rubio

Faculty Publications

We introduce a prior for the parameters of univariate continuous distributions, based on the Wasserstein information matrix, which is invariant under reparameterisations. We discuss the links between the proposed prior with information geometry. We present sufficient conditions for the propriety of the posterior distribution for general classes of models. We present a simulation study that shows that the induced posteriors have good frequentist properties.


Probing Free Nucleons With (Anti)Neutrinos, Roberto Petti Nov 2022

Probing Free Nucleons With (Anti)Neutrinos, Roberto Petti

Faculty Publications

We discuss a method to study free protons and neutrons using ν(⊽)-hydrogen (H) Charged Current (CC) inelastic interactions, together with various precision tests of the isospin (charge) symmetry using ν and ⊽ CC interactions on both H and nuclear targets. Probing free nucleons with (anti)neutrinos provides information about their partonic structure, as well as a crucial input for the modeling of ν(⊽)-nucleus (A) interactions. Such measurements concurrently represent a valuable tool to address the main limitations of accelerator-based neutrino scattering experiments on nuclear targets, originating from the combined effect of the unknown (anti)neutrino energy and of the …


Optimizing Switching Of Non-Linear Properties With Hyperbolic Metamaterials, James A. Ethridge, John G. Jones, Manuel R. Ferdinandus, Michael J. Havrilla, Michael A. Marciniak Nov 2022

Optimizing Switching Of Non-Linear Properties With Hyperbolic Metamaterials, James A. Ethridge, John G. Jones, Manuel R. Ferdinandus, Michael J. Havrilla, Michael A. Marciniak

Faculty Publications

Hyperbolic metamaterials have been demonstrated to have special potential in their linear response, but the extent of their non-linear response has not been extensively modeled or measured. In this work, novel non-linear behavior of an ITO/SiO2 layered hyperbolic metamaterial is modeled and experimentally confirmed, specifically a change in the sign of the non-linear absorption with intensity. This behavior is tunable and can be achieved with a simple one-dimensional layered design. Fabrication was performed with physical vapor deposition, and measurements were conducted using the Z-scan technique. Potential applications include tunable optical switches, optical limiters, and tunable components of laser sources.


Generating Realistic Cyber Data For Training And Evaluating Machine Learning Classifiers For Network Intrusion Detection Systems, Marc W. Chalé, Nathaniel D. Bastian Nov 2022

Generating Realistic Cyber Data For Training And Evaluating Machine Learning Classifiers For Network Intrusion Detection Systems, Marc W. Chalé, Nathaniel D. Bastian

Faculty Publications

No abstract provided.


Interband Transitions And Critical Points Of Single-Crystal Thoria Compared With Urania, Christina L. Dugan, Lu Wang, Kai Zhang, James Matthew Mann, Martin M. Kimani, Wai-Ning Mei, Peter A. Dowben, James C. Petrosky Nov 2022

Interband Transitions And Critical Points Of Single-Crystal Thoria Compared With Urania, Christina L. Dugan, Lu Wang, Kai Zhang, James Matthew Mann, Martin M. Kimani, Wai-Ning Mei, Peter A. Dowben, James C. Petrosky

Faculty Publications

The interband transitions of UO2 are validated independently through cathode luminescence. A picture emerges consistent with density functional theory. While theory is generally consistent with experiment, it is evident from the comparison of UO2 and ThO2 that the choice of functional can significantly alter the bandgap and some details of the band structure, in particular at the conduction band minimum. Strictly ab initio predictions of the optical properties of the actinide compounds, based on density functional theory alone, continue to be somewhat elusive.


Antibody Prevalence And Risk Factors Associated With Rickettsia Spp. In A Pediatric Cohort: Sfgr Remains Underdiagnosed And Underreported In El Salvador, Kyndall C. Dye-Braumuller, Marvin Stanley Rodríguez Aquino, Kia Zellars, Hanna Waltz, Madeleine Meyer, Lídua Gual-Gonzalez, Stella C.W. Self, Mufaro Kanyangarara, Melissa Nolan Ph.D., Mph Oct 2022

Antibody Prevalence And Risk Factors Associated With Rickettsia Spp. In A Pediatric Cohort: Sfgr Remains Underdiagnosed And Underreported In El Salvador, Kyndall C. Dye-Braumuller, Marvin Stanley Rodríguez Aquino, Kia Zellars, Hanna Waltz, Madeleine Meyer, Lídua Gual-Gonzalez, Stella C.W. Self, Mufaro Kanyangarara, Melissa Nolan Ph.D., Mph

Faculty Publications

Spotted fever group rickettsioses (SFGR) are caused by a group of tick-borne pathogens that are increasing in incidence globally. These diseases are typically underreported and undiagnosed in low- and middle-income countries, and thus, have been classified as neglected bacterial pathogens. Countries with high poverty, low human development index score, and limited health infrastructure—like El Salvador in Central America—lack necessary surveillance for SFGR and other tick-borne pathogens. This paucity of baseline SFGR infection prevalence leaves vulnerable populations at risk of misdiagnosis. Further, tick-borne disease burdens in El Salvador are severely limited. To lay the foundation for tick-borne disease epidemiology in El …


Process Evaluation Methods And Results From The Health In Pregnancy And Postpartum (Hipp) Randomized Controlled Trial, Sarah Wilcox Phd, Alicia A. Dahl, Alycia K. Boutté, Jihong Liu Sc.D., Kelsey Day, Gabrielle Turner-Mcgrievy Ph.D., Rd, Ellen Wingard Oct 2022

Process Evaluation Methods And Results From The Health In Pregnancy And Postpartum (Hipp) Randomized Controlled Trial, Sarah Wilcox Phd, Alicia A. Dahl, Alycia K. Boutté, Jihong Liu Sc.D., Kelsey Day, Gabrielle Turner-Mcgrievy Ph.D., Rd, Ellen Wingard

Faculty Publications

Background

Excessive gestational weight gain has increased over time and is resistant to intervention, especially in women living with overweight or obesity. This study described the process evaluation methods and findings from a behavioral lifestyle intervention for African American and white women living with overweight and obesity that spanned pregnancy (≤ 16 weeks gestation) through 6 months postpartum.

Methods

The Health in Pregnancy and Postpartum (HIPP) study tested a theory-based behavioral intervention (vs. standard care) to help women (N = 219; 44% African American, 29.1 ± 4.8 years) living with overweight or obesity meet weight gain guidelines in pregnancy and …


Higher Adherence To A Mediterranean Diet Is Associated With Improved Insulin Sensitivity And Selected Markers Of Inflammation In Individuals Who Are Overweight And Obese Without Diabetes, Surbhi Sood, Jack Feehan, Catherine Itsiopoulos, Kirsty Wilson, Magdalena Plebanski, David Scott, James Hébert Scd, Nitin Shivappa Mbbs, Mph, Ph.D., Aya Mousa, Elena S. George, Barbora De Courten Oct 2022

Higher Adherence To A Mediterranean Diet Is Associated With Improved Insulin Sensitivity And Selected Markers Of Inflammation In Individuals Who Are Overweight And Obese Without Diabetes, Surbhi Sood, Jack Feehan, Catherine Itsiopoulos, Kirsty Wilson, Magdalena Plebanski, David Scott, James Hébert Scd, Nitin Shivappa Mbbs, Mph, Ph.D., Aya Mousa, Elena S. George, Barbora De Courten

Faculty Publications

Insulin resistance (IR) and chronic low-grade inflammation are risk factors for chronic diseases including type 2 diabetes (T2D) and cardiovascular disease. This study aimed to investigate two dietary indices: Mediterranean Diet Score (MDS) and Dietary Inflammatory Index (DII®), and their associations with direct measures of glucose metabolism and adiposity, and biochemical measures including lipids, cytokines and adipokines in overweight/obese adults. This cross-sectional study included 65 participants (males = 63%; age 31.3 ± 8.5 years). Dietary intake via 3-day food diaries was used to measure adherence to MDS (0–45 points); higher scores indicating adherence. Energy-adjusted DII (E-DII) scores were calculated with …