Physical Sciences and Mathematics Commons^™

Nonparametric Estimation Of Transition Probabilities In Illness-Death Model Based On Ranked Set Sampling, Ying Ma

USF Tampa Graduate Theses and Dissertations

The ranked set sampling (RSS) design is applied widely in agriculture, environmental science, and medical research where the exact measurements of sampling units is costly, but sampling units can be ranked by a correlated concomitant variable. RSS is usually a cost-efficient alternate to simple random sampling (SRS) for selecting more representative samples. This study presents a novel methodology to investigate the nonparametric estimation of transition probabilities in illness-death model using the RSS design. We study the Aalen–Johansen estimator of transition probabilities in illness-death Markov model based on RSS design under random right censoring time and propose nonparametric estimators of the …

A Technique-Based Approach To Structure-From-Motion: Applications To Human-Coastal Environments, Robert Van Alphen

USF Tampa Graduate Theses and Dissertations

Photogrammetry is a method by which physical information can be extracted from thecorrespondence of 2-dimensional images. In the geosciences, Structure-from-Motion (SfM) photogrammetry is a technique that has seen considerable interest in the past decade of research. Here I present three case studies of various scope and methodologies which can inform the use of SfM in the geosciences. First, I discuss the theoretical and algorithmic basis of SfM photogrammetry and its uses thus far in the geosciences. Chapters two through four show specific studies which highlight several approaches to SfM and the data which can be produced. Chapter five then concludes …

New Developments In Statistical Optimal Designs For Physical And Computer Experiments, Damola M. Akinlana

USF Tampa Graduate Theses and Dissertations

Statistical design of experiments allows for multiple factors influencing a process to be systematically manipulated in an experiment, and their effects on the output of the process to be studied via statistical modeling and analysis. Classical designs offer general nice performance but have limited applications due to restricted design size, region, and randomization structure. Computer generated optimal designs become more popular in recent decades due to the rapid growth in computing power. Most existing work in optimal design of experiments involves designing experiments with optimal performance on a single chosen objective or a single response. However, with the increasing limitation …

Determining Depth Of Closure Based On Time-Series Beach Profiles And Empirical Formulas: A Case Study Along The Florida Coast, Elizabeth Royer

USF Tampa Graduate Theses and Dissertations

Depth of closure (DOC) is defined as the most landward depth seaward of which there is no significant change in bed elevation and no significant net sediment exchange between the nearshore and the offshore over a certain period of time, such as 5 to 20 years. DOC is an essential parameter used in beach and shore protection, sediment management, and many other aspects of coastal studies. Taking advantage of advancements in wave hindcast and bathymetry measurement in the past 20 years (2000-2019), this study determined the DOC at 12 locations along the Florida coast, including three from the northwest Gulf …

On Simultaneous Similarity Of D-Tuples Of Commuting Square Matrices, Corey Connelly

USF Tampa Graduate Theses and Dissertations

It has been shown by B. Shekhtman that when any d-tuple A of pairwise commuting N × N matrices with complex entries is cyclic, then A is simultaneously similar to the d-tuple of commuting N × N matrices B if and only if B is cyclic, and the sets of polynomials in d variables which annihilate A and B are equivalent.

This thesis offers a further generalization of this result, demonstrating the necessary and sufficient conditions for the simultaneous similarity of n-cyclic d-tuples of commuting square complex-valued matrices.

Securing Critical Cyber Infrastructures And Functionalities Via Machine Learning Empowered Strategies, Tao Hou

USF Tampa Graduate Theses and Dissertations

Machine learning plays a vital role in understanding threats, vulnerabilities, and security policies. In this dissertation, two machine learning empowered approaches on improving the security of critical cyber infrastructures and functionalities will be discussed.

The first work focuses on preventing attacks that use adversarial, active end-to-end topology inference to obtain the topology information of a target network. The topology of a network is fundamental for building network infrastructure functionalities. In many scenarios, enterprise networks may have no desire to disclose their topology information. To this end, we propose a Proactive Topology Obfuscation (ProTO) system that adopts a detect-then-obfuscate framework: (i) …

Metabolomic Analysis, Identification And Antimicrobial Assay Of Two Mangrove Endophytes, Stephen Thompson

USF Tampa Graduate Theses and Dissertations

Natural products have played major roles in drug discovery and provided sources for many new drugs. Secondary metabolites, also called natural products, are organic compounds that are produced from fungi, bacteria, and other living organisms. Secondary metabolites produced by endophytic fungi include alkaloids, phenols, peptides, enzymes, polyketides, and terpenes. Endophytic fungi are rich sources of secondary metabolites and demonstrate bioactivity against many human pathogens including the ESKAPE pathogens. This thesis explores the diverse roles of endophytic fungi and their production of unique secondary metabolites for potential drug discovery and development. Secondary metabolites from two endophytic fungi (EG10-21E-2-HDAC & TAP14-34A-2-HDAC), collected …

Video Anomaly Detection: Practical Challenges For Learning Algorithms, Keval Doshi

USF Tampa Graduate Theses and Dissertations

Anomaly detection in surveillance videos is attracting an increasing amount of attention. Despite the competitive performance of several existing methods, they lack theoretical performance analysis, particularly due to the complex deep neural network architectures used in decision making. Additionally, real-time decision making is an important but mostly neglected factor in this domain. Much of the existing methods that claim to be online, depend on batch or offline processing in practice. Furthermore, several critical tasks such as continual learning, model interpretability and cross-domain adaptability are completely neglected in existing works. Motivated by these research gaps, in this dissertation we discuss our …

Integration Of Sustainability Into Higher Education Policies: A Case Study Of The University Of South Florida, Mehmet Z. Apaydin

USF Tampa Graduate Theses and Dissertations

Sustainability and the United Nations Sustainable Development Goals (SDGs) are not new notions for higher education institutions (HEIs). However, well-organized efforts to make campuses "sustainable" are not common, and the efforts are modest compared to the institutional capabilities. This thesis, a case study of the University of South Florida (USF), was designed to explore how sustainability values and SDGs are incorporated into higher education policies. To accomplish this, the study employed a mixed method design that includes a literature review, an overview of policies and implementations, document content analysis, a program and course inventory, a keyword analysis, and semi-structured interviews. …

Hydrodynamic Model For Independent Cold And Thermo-Mineral Twin Springs In A Stratified Continental Karst Aquifer, Camou, Arbailles Massif, Pyrénées, France, Philippe Audra, Jean-Yves Bigot, Dimitri Laurent, Nathalie Vanara, Didier Cailhol, Gérard Cazenave

International Journal of Speleology

The Camou springs (Arbailles Massif, French Western Pyrenees) display an unusual close association of a typically cold karstic spring that drains the Urgonian western limb of the Arbailles, and a thermo-mineral spring (33.5°C; salinity 17.7 g/L). The latter gains its mineralization at the contact of Triassic evaporites mainly through a deep loop in the Apanicé syncline. The fast upflow of this deep water occurs at the cross of large active lines (the North-Pyrenean thrust located at depth, and the Saison transverse fault). Cave diving in the nearby Maddalen Cave allowed reaching the phreatic passage at the origin of the cold …

Hypergaming For Cyber: Strategy For Gaming A Wicked Problem, Joshua A. Sipper

Military Cyber Affairs

Cyber as a domain and battlespace coincides with the defined attributes of a “wicked problem” with complexity and inter-domain interactions to spare. Since its elevation to domain status, cyber has continued to defy many attempts to explain its reach, importance, and fundamental definition. Corresponding to these intricacies, cyber also presents many interlaced attributes with other information related capabilities (IRCs), namely electromagnetic warfare (EW), information operations (IO), and intelligence, surveillance, and reconnaissance (ISR), within an information warfare (IW) construct that serves to add to its multifaceted nature. In this cyber analysis, the concept of hypergaming will be defined and discussed in …

Initial Estuarine Response To Inorganic Nutrient Inputs From A Legacy Mining Facility Adjacent To Tampa Bay, Florida, Marcus W. Beck, Andrew Altieri, Christine Angelini, Maya C. Burke, Jing Chen, Diana W. Chin, Jayne Gardiner, Chuanmin Hu, Katherine A. Hubbard, Yonggang Liu, Cary Lopez, Miles Medina, Elise Morrison, Edward J. Phlips, Gary E. Raulerson, Sheila Scolaro, Edward T. Sherwood, David Tomasko, Robert H. Weisberg, Joseph Whalen

Marine Science Faculty Publications

Legacy mining facilities pose significant risks to aquatic resources. From March 30th to April 9th, 2021, 814 million liters of phosphate mining wastewater and marine dredge water from the Piney Point facility were released into lower Tampa Bay (Florida, USA). This resulted in an estimated addition of 186 metric tons of total nitrogen, exceeding typical annual external nitrogen load estimates to lower Tampa Bay in a matter of days. An initial phytoplankton bloom (non-harmful diatoms) was first observed in April. Filamentous cyanobacteria blooms (Dapis spp.) peaked in June, followed by a bloom of the red tide organism Karenia brevis …

“Lasso The Moon? Is It Possible? What About Hack The Moon? Today’S International Framework For Activities On The Moon”, Diane M. Janosek, Armando Seay, Josa P. Natera

Military Cyber Affairs

The global interest in the moon and outer space continues to skyrocket. The current U.S. commercial investment in space is $350 billion annually, and it is expected to grow to $1 Trillion or more by 2040. The U.S. military investment in space defense and research likewise continues to grow, with the total investment amount remaining classified. With the frequent activity in space, as well as concerns about attacks to US space assets to and from space, the U.S, created the United States Space Command and its Space Force. With private space travel, nanosatellites, lunar exploration, and the proliferation of space …

The Iwar Range + 21 Years: Cyber Defense Education In 2022, Joseph H. Schafer, Chris Morrell, Ray Blaine

Military Cyber Affairs

Twenty-one years ago, The IWAR Range paper published by CCSC described nascent information assurance (now cybersecurity[1]) education programs and the inspiration and details for constructing cyber ranges and facilitating cyber exercises. This paper updates the previously published work by highlighting the dramatic evolution of the cyber curricula, exercise networks and ranges, influences, and environments over the past twenty years.

[1] In 2014, DoD adopted “cybersecurity” instead of “information assurance.” [34:1]

Stability Analysis Of Delay-Driven Coupled Cantilevers Using The Lambert W-Function, Daniel Siebel-Cortopassi

USF Tampa Graduate Theses and Dissertations

A coupled delay-feedback system of two cantilevers can yield greater sensitivity than that of asingle cantilever system, with potential applications in atomic force microscopy. The Lambert W-function analysis concept for delay differential equations is used to more accurately model the behavior of specific configurations of these cantilever systems. We also use this analysis concept to find parameters which yield stability for greater parameter ranges, of the delay differential equations. The Q factor, or quality factor, is the ratio of energy stored in the system, to the energy lost per fixed oscillation/movement cycle. Having stability of the cantilevers corresponds to the …

A Functional Optimization Approach To Stochastic Process Sampling, Ryan Matthew Thurman

USF Tampa Graduate Theses and Dissertations

The goal of the current research project is the formulation of a method for the estimation and modeling of additive stochastic processes with both linear- and cycle-type trend components as well as a relatively robust noise component in the form of Levy processes. Most of the research in stochastic processes tends to focus on cases where the process is stationary, a condition that cannot be assumed for the model above due to the presence of the cyclical sub-component in the overall additive process. As such, we outline a number of relevant theoretical and applied topics, such as stochastic processes and …

Modeling Air Pressure Propagation Through Wind Cave And Jewel Cave: How Can Air Pressure Signals Inside Barometric Caves Be Predicted From Surface Pressure Measurements?, Annika K. Gomell, Andreas Pflitsch

International Journal of Speleology

Recent speleoclimatological research has shed new light on air pressure dynamics inside barometric caves by identifying pressure-modifying processes and resulting systematic differences between cave and surface air pressure. Based on these new findings, a multi- step quantitative model is developed and explored to predict air pressure inside Wind Cave and Jewel Cave – two major barometric cave systems in the Black Hills of South Dakota, USA – from external surface measurements. Therefore, each identified speleoclimatological pressure process is translated into a mathematical operation. Model evaluation based on Pearson correlation and mean (absolute) deviation between model outputs and control measurements yields …

Isotopic Study Of The Waters From The Sulphur Springs Catchment, Tampa, Florida, Esra Zengin

USF Tampa Graduate Theses and Dissertations

A stable isotope study was carried out using precipitation, spring water, groundwater well sample, and a seawater sample during the wet season in the Sulphur Springs watershed in Tampa, Florida. Studies that track long term isotopic variation over wet seasons are limited in the region. To fill this knowledge gap, this study aims to quantify the contributions of precipitation and diffuse sources to discharge in Sulphur Springs. A three-component mixing model was applied using δ18O and δ2H values to determine different source water contributions to spring water discharge. The three-component mixing model calculations suggest spring water consists mainly of diffuse …

Measuring Sustainable Development Through Tax Increment Financed Brownfield Redevelopment Statutes: A Florida Case Study, Jeff Burton

USF Tampa Graduate Theses and Dissertations

This research measures the theoretically sustainable development synergy of United States’ redevelopment, tax increment, and brownfield statutes and questions local redevelopment professionals on this combination’s implementation. This policy’s integration and application measurements guide increased knowledge and best practice methods in the path of America’s population migration into urbanized areas, thus managing the economic, environmental, and social impacts for future generations.

This examination used a pragmatic, qualitative, and quantitative mixed-method approach to identify, collect, code, and analyze redevelopment, tax increment, and state brownfields laws. An exhaustive literature review of the laws’ histories explained when and why they exist. In addition, a …

Desertification Risk Analysis For Wildlife In The Desert Renewable Energy Conversation Plan Area Of California, Serdar Sagdic

USF Tampa Graduate Theses and Dissertations

Desertification is one of the primary threats facing the sustainability of the Earths’s natural resources. Desertification it is an outcome of human impacts to ecosystems and alterations of climate patterns resulting in land degradation and adverse effect on natural resources, vegetation loss, soil infertility, and water scarcity. These changes influence the existence and distribution of wildlife by reducing the availability and quality of habitat that provides food, water, cover, and other life requisites. Therefore, this study aimed at evaluation of potential desertification risks on wildlife species in the Desert Renewable Energy and Conservation Plan (DRECP) area of California.

The DRECP …

Bioactivity Of Suberitenones A And B, Jared G. Waters

USF Tampa Graduate Theses and Dissertations

Throughout human history, natural products have formed the foundation of medicine. In ancient times, a myriad of herbs and fungi have been attributed properties of healing and rejuvenation. Today, that foundation still very much exists, as natural product chemists isolate bioactive compounds from plants, fungi, animals, and microorganisms alike. As more of these secondary metabolites are discovered, scientists pursue more and more sources of biodiversity that may yield new and unprecedented compounds. To this end, Antarctica has become of particular note, as its unique environmental conditions and highly isolated nature make for rare and unusual adaptations in its native wildlife. …

Advances And Applications Of Optimal Polynomial Approximants, Raymond Centner

USF Tampa Graduate Theses and Dissertations

The history of optimal polynomial approximants (OPAs) dates back to the engineering literature of the 1970s. Here, these polynomials were studied in the context of the Hardy space H^2(X), where X denotes the open unit disk D or the bidisk D^2. Under certain conditions, it was thought that these polynomials had all of their zeros outside the closure of X. Hence, it was suggested that these polynomials could be used to design a stable digital filter. In recent mathematics literature, OPAs have been studied in many different function spaces. In these settings, numerous papers have been devoted to studying the …

Empirical And Modeled Δ13c And Δ15n Isoscapes In The Gulf Of Mexico And Their Application To Fish Eye Lens Migration Studies, Brianna Michaud

USF Tampa Graduate Theses and Dissertations

Isoscapes are depictions of the spatial patterns of isotopic values in a given area. Isoscapes can be created using measurements form samples (empirical isoscapes) or using statistical models of spatial isotopic variation (modeled isoscapes). Isoscapes have a wide variety of potential applications though, in the realm of marine ecology, they are most often used infer ecological processes, food web linkages, the origin of samples, and the movements of marine organisms.

However, to use isoscapes for these applications, it is necessary to have isoscapes at spatial scales relevant to the application in question. It is also necessary to have isoscapes that …

Block Copolymer Directed Self-Assembly: Exploring The Efficacy Of Applications In Semiconductor Fabrication, Jakin Bryce Delony

USF Tampa Graduate Theses and Dissertations

Over the course of the past 80 years, semiconductor devices have become increasingly ubiquitous in everyday life.From constructing mainframes that encompassed entire rooms during the 1940s, to inventing personal computers in the 1980s, to developing progressively faster smartphones and wearable technology in the 2010s, the primary driving force behind the Digital Revolution has been increasing transistor counts, and thus computing power, via incremental improvements in optical lithography. In 1965, Intel co-founder Gordon Moore boldly predicted that the transistor density of semiconductor devices would double approximately every 18-24 months. While this prediction -- now colloquially referred to as Moore's Law -- …

Relationships Among The Community Of Inquiry, Achievement Emotions, And Academic Achievement In Asynchronous Online Learning In Higher Education, David H. Tai

USF Tampa Graduate Theses and Dissertations

This research aimed to investigate how achievement emotions predict, mediate, and affect academic achievement in online learning. Online learning has been proliferating, but little is known about how emotion mediates cognition in the Community of Inquiry framework. Recent progress in cognitive neuroscience provided the theoretical foundation for researchers to investigate emotion's role in online learning, especially academic achievement. The researcher of this study adopted a quantitative non-experimental research design to investigate how achievement emotions mediated, predicted, and affected academic achievement in the Community of Inquiry framework. The Partial Least Square Structure Equation Modeling (PLS- SEM) method was adopted for statistical …

Light-Controlled Magnetism And Magnetic Sensing In Two-Dimensional Vanadium Dichalcogenides And Related Semiconductors, Valery Ortiz Jimenez

USF Tampa Graduate Theses and Dissertations

Atomically thin transition metal dichalcogenide (TMD) semiconductors hold enormous potential for modern optoelectronic devices, magnetic sensing, and quantum computing applications. By inducing long-range ferromagnetism (FM) in these semiconductors by stacking them with other magnetic TMDs or through the introduction of small amounts of a magnetic dopant, it is possible to extend their potential in emerging spintronic applications. In this dissertation, we aim to demonstrate two important applications of these materials: magnetic sensing and light-mediated, room temperature (RT) FM in V-doped WS2 (V-WS2) and V-WSe2 monolayers and in ML VSe2/TS2 (T = Mo and W) heterostructures. In this work, we developed …

On The Reliability Of Wearable Sensors For Assessing Movement Disorder-Related Gait Quality And Imbalance: A Case Study Of Multiple Sclerosis, Steven Díaz Hernández

USF Tampa Graduate Theses and Dissertations

Approximately 33 million American adults had a movement disorder associated with medication use, ear infections, injury, or neurological disorders in 2008, with over 18 million people affected by neurological disorders worldwide. Physical therapists assist people with movement disorders by providing interventions to reduce pain, improve mobility, avoid surgeries, and prevent falls and secondary complications of neurodegenerative disorders. Current gait assessments used by physical therapists, such as the Multiple Sclerosis Walking Scale, provide only semi-quantitative data, and cannot assess walking quality in detail or describe how one’s walking quality changes over time. As a result, quantitative systems have grownas useful tools …

Exploring The Structure And Activity Of Metallo-Tetracyclines, Shahedul Islam

USF Tampa Graduate Theses and Dissertations

Copper as a key component of electron transport chain of eukaryotes is an essential transition metal ion. Copper homeostasis in mammals complex and tightly regulated. Its strong reactivity together with binding with biologically important chemicals can have important repercussions in human health and overall environment. Tetracycline as one of most abundantly used antibiotic of the world has become abundant in the environment as well. Herein in this dissertation we take the journey to explore the complexation of tetracycline with metals in the environment and the intricate interaction between copper and tetracycline by investigating their oxidative behavior once they are complexed. …

Improving Robustness Of Deep Learning Models And Privacy-Preserving Image Denoising, Hadi Zanddizari

USF Tampa Graduate Theses and Dissertations

Applications of deep learning models and convolutional neural networks have been rapidly increased. Although state-of-the-art CNNs provide high accuracy in many applications, recent investigations show that such networks are highly vulnerable to adversarial attacks. The black-box adversarial attack is one type of attack that the attacker does not have any knowledge about the model or the training dataset, but it has some input data set and theirlabels.

In this chapter, we propose a novel approach to generate a black-box attack in a sparse domain, whereas the most critical information of an image can be observed. Our investigation shows that large …

Study On New Reactivity Of Vinyl Gold And Its Sequential Transformations, Teng Yuan

USF Tampa Graduate Theses and Dissertations

This dissertation mainly contains three parts: 1) the study of new reactivity of vinyl gold(I) and synergistic gold-iron catalyzed regioselective crossed aldol reaction. 2) synergistic gold-iron catalyzed amide crossed aldol reaction by using ynamides as ‘masked’ amides. 3) alkyne trifunctionalization via divergent gold catalysis: combining three modes of gold catalysis: π activation, nucleophilic addition of vinyl gold and gold redox catalysis. This novel method affords access to constructing C-N, C-O and C-C bond in one step at mild condition.

In the first part, a new reaction mode in gold catalysis will be introduced. Due to the protodeauration of vinyl gold …