Physical Sciences and Mathematics Commons^™

A Novel Spatiotemporal Prediction Method Of Cumulative Covid-19 Cases, Junzhe Cai

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Prediction methods are important for many applications. In particular, an accurate prediction for the total number of cases for pandemics such as the Covid-19 pandemic could help medical preparedness by providing in time a sufficient supply of testing kits, hospital beds and medical personnel. This thesis experimentally compares the accuracy of ten prediction methods for the cumulative number of Covid-19 pandemic cases. These ten methods include two types of neural networks and extrapolation methods based on best fit linear, best fit quadratic, best fit cubic and Lagrange interpolation, as well as an extrapolation method from Revesz. We also consider the …

Suffix Tree, Minwise Hashing And Streaming Algorithms For Big Data Analysis In Bioinformatics, Sairam Behera

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

In this dissertation, we worked on several algorithmic problems in bioinformatics using mainly three approaches: (a) a streaming model, (b) sux-tree based indexing, and (c) minwise-hashing (minhash) and locality-sensitive hashing (LSH). The streaming models are useful for large data problems where a good approximation needs to be achieved with limited space usage. We developed an approximation algorithm (Kmer-Estimate) using the streaming approach to obtain a better estimation of the frequency of k-mer counts. A k-mer, a subsequence of length k, plays an important role in many bioinformatics analyses such as genome distance estimation. We also developed new methods that use …

Building An Improved Drought Climatology Using Updated Drought Tools: A New Mexico Food-Energy-Water (Few) Systems Focus, Lindsay E. Johnson, Hatim M.E. Geli, Michael J. Hayes, Kelly Helm Smith

Drought Mitigation Center: Faculty Publications

Drought is a familiar climatic phenomenon in the United States Southwest, with complex human-environment interactions that extend beyond just the physical drought events. Due to continued climate variability and change, droughts are expected to become more frequent and/or severe in the future. Decision-makers are charged with mitigating and adapting to these more extreme conditions and to do that they need to understand the specific impacts drought has on regional and local scales, and how these impacts compare to historical conditions. Tremendous progress in drought monitoring strategies has occurred over the past several decades, with more tools providing greater spatial and …

Population Characteristics And Movement Of Blue Catfish In The Kansas River, Quintin Dean

School of Natural Resources: Dissertations, Theses, and Student Research

Blue Catfish Ictalurus furcatus is a mobile, large-river species native to the Missouri River and its tributaries, including the Kansas River. Historical data regarding the Kansas River population is negligible, limiting managers’ ability to appropriately manage this population. Multiple anthropogenic barriers along the Kansas River create a gradient of connectivity within the Kansas River, and with the Missouri River, possibly limiting Blue Catfish movement. Additionally, the contribution of tributary-reservoir populations to the Kansas River remains unknown. My objectives were to: 1) describe population characteristics and 2) quantify stock contributions from the Missouri River and Kansas River tributary reservoirs to the …

Spectral Properties Of A Non-Compact Operator In Ecology, Matthew Reichenbach

Department of Mathematics: Dissertations, Theses, and Student Research

Ecologists have used integral projection models (IPMs) to study fish and other animals which continue to grow throughout their lives. Such animals cannot shrink, since they have bony skeletons; a mathematical consequence of this is that the kernel of the integral projection operator T is unbounded, and the operator is not compact. A priori, it is unclear whether these IPMs have an asymptotic growth rate λ, or a stable-stage distribution ψ. In the case of a compact operator, these quantities are its spectral radius and the associated eigenvector, respectively. Under biologically reasonable assumptions, we prove that the non-compact operators in …

Factors Affecting Computer Science Research Productivity And Impact In Nigeria: A Bibliometric Evidence, Azubuike Ezenwoke

Library Philosophy and Practice (e-journal)

Computer science is a burgeoning research field and has the potential to accelerate the rate of industrialisation and subsequently, economic development. Using bibliometric data obtained from Scopus, this study employed a 15-year bibliometric analysis to highlight Nigeria’s productivity and impact trends in the computer science research landscape. Our findings are summarised as follows: First, Nigeria’s computer science research contribution and citations are meager in comparison to the global output. Secondly, international collaboration is generally weak as most collaborations are national in scope. Third, Nigeria’s computer science-related research is published in low-quality outlets, as Scopus has discontinued the indexing of most …

Ferroelectric-Driven Tunable Magnetism In Ultrathin Platinum Films, Qilong Sun, Farzad Mahfouzi, Julian P. Velev, Evgeny Y. Tsymbal, Nicholas Kioussis

Department of Physics and Astronomy: Faculty Publications

Electric control of magnetism in magnetoelectric (ME) multiferroics is expected to have a significant impact on a wide range of technological applications. Here, we predict the modulation of magnetism in ultrathin platinum films due to the ferroelectric polarization of the BaTiO₃ substrate, which along with biaxial strain changes the density of states at the Fermi energy. We demonstrate that both the magnitude and direction of the magnetization depend strongly on the polarization direction and/or strain. This leads to an unprecedented ME effect involving a giant change of magnetocrystalline anisotropy under polarization switching due to the large spin-orbit coupling of …

Representational Learning Approach For Predicting Developer Expertise Using Eye Movements, Sumeet Maan

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

The thesis analyzes an existing eye-tracking dataset collected while software developers were solving bug fixing tasks in an open-source system. The analysis is performed using a representational learning approach namely, Multi-layer Perceptron (MLP). The novel aspect of the analysis is the introduction of a new feature engineering method based on the eye-tracking data. This is then used to predict developer expertise on the data. The dataset used in this thesis is inherently more complex because it is collected in a very dynamic environment i.e., the Eclipse IDE using an eye-tracking plugin, iTrace. Previous work in this area only worked on …

Impacts Of Irrigated Agriculture On The Near Surface And Planetary Boundary Layer Atmosphere: Results From The Great Plains Irrigation Experiment (Grainex), Emilee Lachenmeier

School of Natural Resources: Dissertations, Theses, and Student Research

Modification of natural prairie grasslands into irrigated and rainfed agriculture in the Great Plains produced significant impacts on regional weather and climate including temperatures, precipitation, energy fluxes, and the planetary boundary layer (PBL) atmosphere. The Great Plains Irrigation Experiment (GRAINEX) during the 2018 growing season collected data over irrigated and non-irrigated crop fields to further understand these impacts. The data were collected during two intensive observation periods (IOPs) in early June (IOP 1: 30 May – 13 June of 2018) and late July (IOP 2: 16 July – 30 July of 2018). The data analyzed include latent (LE) and sensible …

Population Demographics, Distribution, And Environmental History Of Asian Carp In A Great Plains River, Jake Werner

School of Natural Resources: Dissertations, Theses, and Student Research

Silver Carp Hypophthalmichthys molitrix, Bighead Carp H. nobilis, and Black Carp Mylopharyngodon piceus, collectively known as Asian carp, are a group of invasive fishes in the U.S.A. that have garnered much attention over the last couple decades. Most research devoted to this group of fishes has been focused in the Mississippi River basin with little investigation in the Missouri River drainage, particularly in tributary systems. The Kansas River is a major tributary to the Missouri River that has multiple anthropogenic barriers creating varying levels of connectivity within the Kansas River itself, and with the Missouri River. Information …

Ultrafast Spin-Currents And Charge Conversion At 3d-5d Interfaces Probed By Time-Domain Terahertz Spectroscopy, T. H. Dang, J. Hawecker, E. Rongione, G. Baez Flores, D. Q. To, J. C. Rojas-Sanchez, H. Nong, J. Mangeney, J. Tignon, F. Godel, S. Collin, P. Seneor, M. Bibes, A. Fert, M. Anane, J. M. George, L. Vila, M. Cosset-Cheneau, D. Dolfi, R. Lebrun, P. Bortolotti, Kirill Belashchenko, S. Dhillon, H. Jaffrès

Kirill Belashchenko Publications

Spintronic structures are extensively investigated for their spin-orbit torque properties, required for magnetic commutation functionalities. Current progress in these materials is dependent on the interface engineering for the optimization of spin transmission. Here, we advance the analysis of ultrafast spin-charge conversion phenomena at ferromagnetic-Transition metal interfaces due to their inverse spin-Hall effect properties. In particular, the intrinsic inverse spin-Hall effect of Pt-based systems and extrinsic inverse spin-Hall effect of Au:W and Au:Ta in NiFe/Au:(W,Ta) bilayers are investigated. The spin-charge conversion is probed by complementary techniques-ultrafast THz time-domain spectroscopy in the dynamic regime for THz pulse emission and ferromagnetic resonance spin-pumping …

Remediating Contaminated Groundwater With An Aerated, Direct-Push, Oxidant Delivery System, James Reece, Mark Christenson, Ann Kambhu, Yusong Li, Clifford Harris, Steve D. Comfort

School of Natural Resources: Faculty Publications

One of the biggest challenges to treating contaminated aquifers with chemical oxidants is achieving uniform coverage of the target zone. In an effort to maximize coverage, we report the design and installation of a novel aerated, slow-release oxidant delivery system that can be installed by direct-push equipment. By continuously bubbling air beneath a slow-release oxidant in situ, an airlift pump is created that causes water and oxidant to be dispersed from the top of the outer screen and drawn in at the bottom. This continuous circulation pattern around each drive point greatly facilitates the spreading of the oxidant as it …

Harmful Algal Blooms Threaten The Health Of Peri-Urban Fisher Communities: A Case Study In Kisumu Bay, Lake Victoria, Kenya, Amber Roegner, Lewis Sitoki, Chelsea Weirich, Jessica Corman, Dickson Owage, Moses Umami, Ephraim Odada, Jared Miruka, Zachary Ogari, Woutrina Smith, Eliska Rejmankova, Todd R. Miller

School of Natural Resources: Faculty Publications

Available guidance to mitigate health risks from exposure to freshwater harmful algal blooms (HABs) is largely derived from temperate ecosystems. Yet in tropical ecosystems, HABs can occur year-round, and resource-dependent populations face multiple routes of exposure to toxic components. Along Winam Gulf, Lake Victoria, Kenya, fisher communities rely on lake water contaminated with microcystins (MCs) from HABs. In these peri-urban communities near Kisumu, we tested hypotheses that MCs exceed exposure guidelines across seasons, and persistent HABs present a chronic risk to fisher communities through ingestion with minimal water treatment and frequent, direct contact. We tested source waters at eleven communities …

The Importance Of Frontier Orbital Symmetry In The Adsorption Of Diiodobenzene On Mos2(0001), Prescott E. Evans, Zahra Hooshmand, Talat S. Rahman, Peter Dowben

Peter Dowben Publications

Evidence of a role of frontier orbital symmetry, in the adsorption process of diiodobenzene on MoS₂(0001), appears in the huge differences in the rate of adsorption between 1,3-diiodobenzene, 1,2-diiodobenzene and 1,4-diiodobenzene isomers on MoS₂. Experiments indicate that the rate of adsorption of 1,3-diiodobenzene on MoS2(0001) is much greater than that of the 1,2-diodobenzene and 1,4-diiodbenzene isomers. As the differences in calculated diiodobenzene isomer-MoS₂ system adsorption energies and electron affinities are negligible, frontier orbital symmetry appears to play a significant role in diiodobenzene adsorption on MoS₂(0001). The experimental and theory results, in combination, suggest …

Adventuring In The Winds: An Exploration Of Water Accessibility, Keystone Species, Environmental Justice, And Forest Fires In The Wind River Range, Rhianna Giron

Honors Theses

This thesis is a braided narrative that incorporates personal experience, ecological research, and poetry to explain some of the impacts of human interaction in wild spaces and of climate change. The specific areas of study in this essay are the Wind River Range, Wyoming and Nebraska. The purpose of this paper is to discuss topics related to water availability and quality, forest fires, keystone species, and social injustices related to people and environments in the Wind River Range. It is important to learn about other places than the ones we are already familiar with as it helps to instill a …

Interpretation Of Hydrogeologic Data To Support Groundwater Management, Bazile Groundwater Management Area, Northeast Nebraska, 2019—A Case Demonstration Of The Nebraska Geocloud, Christopher M. Hobza, Gregory V. Steele

Publications of the US Geological Survey

Nitrate, age tracer, and continuous groundwater-level data were interpreted in conjunction with airborne electromagnetic (AEM) survey data to understand the movement of nitrate within the Bazile Groundwater Management Area (BGMA) in northeastern Nebraska. Previously published age tracer data and nitrate data indicated vertical stratification of groundwater quality. Younger groundwater sampled within shallow parts of the aquifer had higher concentrations of nitrate, with 70 percent exceeding the U.S. Environmental Protection Agency maximum contaminant level of 10 milligrams per liter. In contrast, groundwater sampled from deeper parts of the aquifer indicated that nitrate concentrations were less than 2 milligrams per liter and …

Packet Delivery: An Investigation Of Educational Video Games For Computer Science Education, Robert Lafferty

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

The field of educational video games has rapidly grown since the 1970s, mostly producing video games to teach core education concepts such as mathematics, natural science, and English. Recently, various research groups have developed educational games to address elective topics such as finance and health. Educational video games often target grade school audiences and rarely target high school students, college students, or adults. Computer science topics are not a common theme among educational video games; the games that address Computer Science topics teach computer fundamentals, such as typing or basic programming, to young audiences.

Packet Delivery, an educational video …

Impacts Of Environmental Conditions On Fleas In Black-Tailed Prairie Dog Burrows, Julia E. Poje, Tonie Rocke, Michael D. Samuel

United States Geological Survey: Staff Publications

Sylvatic plague, caused by the bacterium Yersinia pestis and transmitted by fleas, occurs in prairie dogs of the western United States. Outbreaks can devastate prairie dog communities, often causing nearly 100% mortality. Three competent flea vectors, prairie dog specialists Oropsylla hirsuta and O. tuberculata, and generalist Pulex simulans, are found on prairie dogs and in their burrows. Fleas are affected by climate, which varies across the range of black-tailed prairie dogs (Cynomys ludovicianus), but these effects may be ameliorated somewhat due to the burrowing habits of prairie dogs. Our goal was to assess how temperature and precipitation …

The Prairie Naturalist, Vol. 52, Issue 2, December 2020

The Prairie Naturalist

Comparing Native Bee Communities on Reconstructed and Remnant Prairie in Missouri • Joseph LaRose, Elisabeth B. Webb, and Deborah Finke

Patterns and Potential Causes of Changing Winter Bird Distributions in South Dakota • David L. Swanson, Reza Goljani Amipkhiz, and Mark D. Dixon

Greater prairie-chickens and sharp-tailed grouse have similarly high nest survival in the Nebraska Sandhills • Larkin A. Powell, Walter H. Schacht, Julia P. Ewalt, and Katie R. McCollum

Captive Ring-necked Pheasant Response to Very High Experimental Doses of Lead • Travis J. Runia and Alex J. Solem

Trends in a Greater Prairie Chicken Population Established by Translocation …

The Application And Development Of Metabolomics Methodologies For The Profiling Of Food And Cellular Toxicity, Jade Woods

Department of Chemistry: Dissertations, Theses, and Student Research

Metabolomics is a rapidly growing field of study. Its growth reflects advancements in technology and an improved understanding of the impact of the environment on metabolism. As a result, metabolomics is now commonly employed to investigate and characterize human and plant metabolism. The first chapter of this thesis provides an introduction to metabolomics and an overview of the protocols for sample preparation, data collection and statistical analysis. The second thesis chapter describes in explicit detail the step-by-step process of extracting and analyzing metabolites collected from mammalian cells, specifically brain tissue with a focus on Parkinson’s disease. The chapter highlights important …

Estimating The Age And Mechanism Of Boulder Transport Related With Extreme Waves Using Lichenometry, Maria A. Oliveira, Esteve Llop, César Andrade, Cristina Branquinho, Ronald Goble, Sónia Queiroz, Maria C. Freitas, Pedro Pinho

Department of Earth and Atmospheric Sciences: Faculty Publications

Tsunamis and storms cause considerable coastal flooding, numerous fatalities, destruction of structures, and erosion. The characterization of energy and frequency associated with each wave contribute to the risk assessment in coastal regions. Coastal boulder deposits represent a physical proof of extreme inundation and allow us to study the effects of marine floods further back in time than instrumental and historical records. Age estimation of these deposits is challenging due to lack of materials (such as sand, shells, corals, or organic matter) that retain information about the passage of time. Lichenometry, a simple age estimation method, which is cost effective, quick …

Linking Mosquito Surveillance To Dengue Fever Through Bayesian Mechanistic Modeling, Clinton B. Leach, Jennifer A. Hoeting, Kim M. Pepin, Alvaro E. Eiras, Mevin B. Hooten, Colleen T. Webb

USDA Wildlife Services: Staff Publications

Our ability to effectively prevent the transmission of the dengue virus through targeted control of its vector, Aedes aegypti, depends critically on our understanding of the link between mosquito abundance and human disease risk. Mosquito and clinical surveillance data are widely collected, but linking them requires a modeling framework that accounts for the complex non-linear mechanisms involved in transmission. Most critical are the bottleneck in transmission imposed by mosquito lifespan relative to the virus’ extrinsic incubation period, and the dynamics of human immunity. We developed a differential equation model of dengue transmission and embedded it in a Bayesian hierarchical …

Band Structure Topology And Spin Transport In Magnon Systems, Bo Li

Department of Physics and Astronomy: Dissertations, Theses, and Student Research

As the spin excitation quanta in magnetic materials, the magnon is at the heart of the spintronics research because it plays a key role in magnetic dynamics, energy and spin transport, and even determining the ground state of magnetic systems. In this thesis, we will study the band-structure topology and transport properties of magnons in both collinear and noncollinear magnets. Inspired by the great success of topological insulators, exploring magnon topology can unveil the topological nature of bosonic particles and widen the zoo of topological materials. We propose a three-dimensional magnon topological insulator model protected by sublattice chiral symmetries, which …

Flowers Are Essential To Maintain High Beetle Diversity (Coleoptera) In A Neotropical Rainforest Canopy, Susan Kirmse, Caroline S. Chaboo

Publications of UNSM Staff and Affiliates

Many hypotheses have been proposed to explain the megadiversity of angiosperms and insects. Flowers and their pollinators represent the most common terrestrial mutualistic interaction today and this is thought to have driven the evolution of angiosperms and their visitors. Within the framework of that interaction, this paper develops and tests two new hypotheses: 1) megadiversity of canopy beetles in tropical rainforests is largely based on flower resources, and 2) the majority of adult canopy beetles are adapted to visit flowers. To test hypothesis 1, the beetle fauna associated with 23 canopy tree species (13 families, 45 individuals) in a 1.4 …

Machine Learning Augmentation Micro-Sensors For Smart Device Applications, Mohammad H. Hasan

Department of Mechanical and Materials Engineering: Dissertations, Theses, and Student Research

Novel smart technologies such as wearable devices and unconventional robotics have been enabled by advancements in semiconductor technologies, which have miniaturized the sizes of transistors and sensors. These technologies promise great improvements to public health. However, current computational paradigms are ill-suited for use in novel smart technologies as they fail to meet their strict power and size requirements. In this dissertation, we present two bio-inspired colocalized sensing-and-computing schemes performed at the sensor level: continuous-time recurrent neural networks (CTRNNs) and reservoir computers (RCs). These schemes arise from the nonlinear dynamics of micro-electro-mechanical systems (MEMS), which facilitates computing, and the inherent ability …

Assessing The Impact Of Land Use And Land Cover Data Representation On Weather Forecast Quality: A Case Study In Central Mexico, Rezaul Mahmood

School of Natural Resources: Faculty Publications

In atmospheric modeling, an accurate representation of land cover is required because such information impacts water and energy budgets and, consequently, the performance of models in simulating regional climate. This study analyzes the impact of the land cover data on an operational weather forecasting system using the Weather Research and Forecasting (WRF) model for central Mexico, with the aim of improving the quality of the operative forecast. Two experiments were conducted using different land cover datasets: a United States Geological Survey (USGS) map and an updated North American Land Change Monitoring System (NALCMS) map. The experiments were conducted as a …

The Birds Of The Nebraska Sandhills, Paul A. Johnsgard, Josef Kren

Zea E-Books Collection

This book provides basic information on all the species of birds that have been reliably reported from the Nebraska Sandhills region as of 2020. They include 46 permanent residents, 125 summer breeders, 125 migrants, and 102 rare or accidental species, totaling 398 species. Information on status, migration, and habitats is provided for all but the very rare and accidental species. There are also descriptions of 46 refuges, preserves, and other public-access natural areas in the region and seven suggested birding routes. The text contains more than 90,000 words and over 250 literature references along with more than 20 drawings, 9 …

Proximity-Induced Magnetization In Graphene: Towards Efficient Spin Gating, Mihovil Bosnar, Ivor Lončarić, P. Lazić, Kirill Belashchenko, Igor Žutić

Kirill Belashchenko Publications

Gate-tunable spin-dependent properties could be induced in graphene at room temperature through the magnetic proximity effect by placing it in contact with a metallic ferromagnet. Because strong chemical bonding with the metallic substrate makes gating ineffective, an intervening passivation layer is needed. Previously considered passivation layers result in a large shift of the Dirac point away from the Fermi level, so that unrealistically large gate fields are required to tune the spin polarization in graphene (Gr). We show that a monolayer of Au or Pt used as the passivation layer between Co and graphene brings the Dirac point closer to …

Discovering Rare-Earth-Free Magnetic Materials Through The Development Of A Database, Masahiro Sakurai, Renhai Wang, Timothy Liao, Chao Zhang, Huaijun Sun, Yang Sun, Haidi Wang, Xin Zhao, Songyou Wang, Balamurugan Balasubramanian, Xiaoshan S. Xu, David J. Sellmyer, Vladimir Antropov, Jianhua Zhang, Cai-Zhuang Wang, Kai-Ming Ho, James R. Chelikowsky

Department of Physics and Astronomy: Faculty Publications

We develop an open-access database that provides a large array of datasets specialized for magnetic compounds as well as magnetic clusters. Our focus is on rare-earth-free magnets. Available datasets include (i) crystallography, (ii) thermodynamic properties, such as the formation energy, and (iii) magnetic properties that are essential for magnetic-material design. Our database features a large number of stable and metastable structures discovered through our adaptive genetic algorithm (AGA) searches. Many of these AGA structures have better magnetic properties when compared to those of the existing rare-earth-free magnets and the theoretical structures in other databases. Our database places particular emphasis on …

Formal Concept Analysis Applications In Bioinformatics, Sarah Roscoe

Department of Computer Science and Engineering: Dissertations, Theses, and Student Research

Bioinformatics is an important field that seeks to solve biological problems with the help of computation. One specific field in bioinformatics is that of genomics, the study of genes and their functions. Genomics can provide valuable analysis as to the interaction between how genes interact with their environment. One such way to measure the interaction is through gene expression data, which determines whether (and how much) a certain gene activates in a situation. Analyzing this data can be critical for predicting diseases or other biological reactions. One method used for analysis is Formal Concept Analysis (FCA), a computing technique based …