Physical Sciences and Mathematics Commons^™

Visualizing The Fate And Distribution Of Pahs In Spartina And Avicennia Tissues From Barataria Basin, La, Kristina Jeannette Sebastian

LSU Master's Theses

During crude oil spill events, vegetation in marsh environments sequester polycyclic aromatic hydrocarbons (PAHs) from the crude oil by partitioning from the air phase through the waxy cuticle on the leaf surface. Recent studies from Macondo oil-impacted marshes have demonstrated that cycling of low molecular weight petrogenic PAHs occurs through the cuticle and other leaf tissue. At present, our understanding of how PAHs travel through the cuticle is coarse and limited by grab samples across the entire leaf, which preventing a full understanding the dynamics of PAH cycling in this environment. Multiphoton (MP) confocal microscopy visualizes the distribution of PAHs …

The Importance Of Landscape Position Information And Elevation Uncertainty For Barrier Island Habitat Mapping And Modeling, Nicholas Matthew Enwright

LSU Doctoral Dissertations

Barrier islands provide important ecosystem services, including storm protection and erosion control to the mainland, habitat for fish and wildlife, and tourism. As a result, natural resource managers are concerned with monitoring changes to these islands and modeling future states of these environments. Landscape position, such as elevation and distance from shore, influences habitat coverage on barrier islands by regulating exposure to abiotic factors, including waves, tides, and salt spray. Geographers commonly use aerial topographic lidar data for extracting landscape position information. However, researchers rarely consider lidar elevation uncertainty when using automated processes for extracting elevation-dependent habitats from lidar data. …

The Effects Of Oil On Blue Crab And Periwinkle Snail Interactions: A Mesocosm Study, Elizabeth M. Robinson, Nancy N. Rabalais

Faculty Publications

We examined the sub-lethal effect of Macondo oil from the Deepwater Horizon oil spill on predator-prey interactions using blue crabs (Callinectes sapidus) and periwinkle snails (Littoraria irrorata). A 2 x 2 factorial mesocosm design determined the effect of oil (no oil vs. oil) and blue crabs (no blue crab predator vs. one blue crab predator) on periwinkle snail climbing and survival. Sixteen mesocosm tanks were used in the experiment, which were replicated three times. Each tank contained water, sand, and Spartina marsh stems. The sixteen tanks were divided between two, temperature-controlled chambers to separate oil treatments (no oil vs. oil). …

Equivalence Of Contact Gluing Maps In Sutured Floer Homology, Federico Salmoiraghi

LSU Doctoral Dissertations

The contact invariant from Heegaard Floer homology is a useful tool for studying

contact structures. This invariant is preserved under cut-and-paste operations

by contact gluing maps of Honda, Kazez, and Matic. However, these maps are

difficult to compute in practice, even in simple cases.

We show that the contact gluing map of Honda, Kazez, and Matic

has a natural description in terms of bordered sutured Floer homology. In

particular, we establish Zarev’s conjecture that his pairing on sutured Floer

homology is equivalent to the contact gluing map.

Wide-Ranging Temporal Variation In Transoceanic Movement And Population Mixing Of Bluefin Tuna In The North Atlantic Ocean, Michael A. Dance

Faculty Publications

Uncertainty regarding the movement and population exchange of Atlantic bluefin tuna (Thunnus thynnus) from the two primary spawning areas (Gulf of Mexico, Mediterranean Sea) is increasingly implicated as a major impediment for the conservation of this species. Here, two mixture methods were applied to natural chemical markers (delta O-18 and delta C-13) in otoliths (ear stones) to comprehensively investigate the nature and degree of transoceanic movement and mixing of eastern and western populations in several areas of the North Atlantic Ocean that potentially represent mixing hotspots. Areas investigated occurred on both sides of the 45 degrees W management boundary as …

Electromagnetic Sum Rules And Response Functions From The Symmetry-Adapted No-Core Shell Model, Robert Byron Baker

LSU Doctoral Dissertations

Recent developments in ab initio nuclear structure have provided us with a variety of many-body methods capable of describing nuclei into the medium-mass region of the chart of nuclides. One of these, the symmetry-adapted no-core shell model (SA-NCSM), capitalizes on inherent symmetries of the nucleus and is uniquely suited to examine the underlying physics of dynamical quantities, such as the response function.

We examine the applicability of the SA-NCSM to calculations of these quantities and assess the quality of its inputs by calculating electromagnetic sum rules and response functions with the Lanczos sum rule method and Lanczos response function method, …

Simulations Of Strong-Field Ionization In Molecules Using Tuned Range-Separated Time-Dependent Density Functional Theory, Adonay Sissay

LSU Doctoral Dissertations

Strong-field ionization and the resulting electronic dynamics are important for a range of processes such as high harmonic generation, photodamage, charge resonance enhanced ionization, and ionization-triggered charge migration. Modeling ionization dynamics in molecular systems from first-principles can be challenging due the large spatial extent of the wavefunction which stresses the accuracy of basis sets, and the intense fields which require non-perturbative time-dependent electronic structure methods. In this dissertation, we develop a time dependent density functional theory approach which uses a Gaussian-type orbital (GTO) basis set to capture strong-field ionization rates and dynamics in atoms and small molecules. This involves propagating …

Sources And Chemical Stability Of Soil Organic Carbon Along A Salinity Gradient And A Chronosequence Of Created Brackish Marshes In Coastal Louisiana, Megan L. Kelsall

LSU Master's Theses

Tidal marshes have been recognized for providing a number of important ecological services including soil carbon sequestration. However, the loss of tidal marsh habitat due to climate change and anthropogenic stressors exposes previously stored soil organic carbon (SOC) to oxidation. The vulnerability of SOC to oxidation depends on its chemical stability and environmental conditions limiting decomposition. Labile organic carbon (LC), decomposes quickly unless abiotic conditions limit decomposition. Recalcitrant organic carbon (RC) decomposes slower and is stored for longer time periods. Predicting long-term storage of SOC is complicated by the potential for multiple SOC sources, differences in chemical stability, and variation …

Assessment Of Excess Thyroid Cancer Risk Following A Hypothetical Radiological Incident In Louisiana And Best-Case Risk Reduction Achieved By Thyroid Blockade, Garrett A. Otis

LSU Master's Theses

Radioactive isotopes of iodine are produced by nuclear power plants as a byproduct of nuclear fission reactions. If these isotopes are released into the environment, such as during a breach of containment, they constitute a health risk to exposed individuals. To mitigate the risk of thyroid cancer due to exposure to radioactive iodine, “iodide prophylaxis,” also known as “thyroid blockade,” can be used, usually by administration of potassium iodide (KI). In some areas of the world, KI has been provided to the general public by their governments as a precautionary measure against potential nuclear power plant incidents. However, in the …

High Performance Fuzz Testing Of Memory Forensics Frameworks, Arian Dokht Shahmirza

LSU Master's Theses

The analysis of the volatile memory (RAM) of a computer system, known as memory forensics, is a critical component of modern digital forensics investigations. Since the evidence provided by memory forensics is vital, it is necessary for there to be automated solutions that implement the analysis. Volatility is the most widely used memory forensics framework and also contains the most functionality of all tools publicly available. Volatility, as well as all other memory forensics frameworks, are extremely complex software systems as they must parse a substantial number of in-memory data structures and their associated values. Given the reliance on memory …

High-Harmonic Spectroscopy Of Transient Two-Center Interference Calculated With Time-Dependent Density-Functional Theory, Francois Mauger, Paul M. Abanador, Kenneth Lopata, Kenneth J. Schafer

Faculty Publications

We demonstrate high-harmonic spectroscopy in many-electron molecules using time-dependent density-functional theory. We show that a weak attosecond-pulse-train ionization seed that is properly synchronized with the strong driving mid-infrared laser field can produce experimentally relevant high-harmonic generation (HHG) signals, from which we extract both the spectral amplitude and the target-specific phase (group delay). We also show that further processing of the HHG signal can be used to achieve molecular-frame resolution, i.e., to resolve the contributions from rescattering on different sides of an oriented molecule. In this framework, we investigate transient two-center interference in CO2 and OCS, and how subcycle polarization effects …

Quantum Cluster Algebras At Roots Of Unity, Poisson-Lie Groups, And Discriminants, Kurt Malcolm Trampel Iii

LSU Doctoral Dissertations

This dissertation studies quantum algebras at roots of unity in regards to cluster structure and Poisson structure. Moreover, quantum cluster algebras at roots of unity are rigorously defined. The discriminants of these algebras are described, in terms of frozen cluster variables for quantum cluster algebras and Poisson primes for specializations of quantum algebras. The discriminant is a useful invariant for representation theoretic and algebraic study, whose laborious computation deters direct evaluation. The discriminants of quantum Schubert cells at roots of unity will be computed from the two distinct approaches. These methods can be applied to many other quantum algebras.

Hourly Precipitation Climatology Of The Southeast United States, Vincent Brown

LSU Doctoral Dissertations

Precipitation changes are one of the most important potential outcomes of a warming climate because of how essential it is to society and ecosystems. Sub-daily precipitation time series provide more information on precipitation characteristics, particularly frequency, intensity, and duration compared to daily data. In a series of four peer-reviewed manuscripts, this research investigates sub-daily precipitation characteristics from a climatological perspective. The first study introduces a climatology of hourly precipitation for four first-order weather stations across Louisiana, explores possible changes in the hourly precipitation distribution, and links winter Gulf of Mexico sea surface temperatures to the frequency of hours with precipitation. …

Cogongrass (Imperata Cylindrica (L.) Beauv.) In Louisiana: Cause And Consequence, Lorissa A. Radunzel-Davis

LSU Master's Theses

Cogongrass (Imperata cylindrica (L.) Beauv.), an invasive species from East Asia, is found worldwide and is problematic in several countries. In the United States, it grows primarily in the Southeast, reducing biodiversity by growing in dense patches and potentially causing mortality and reducing value of native and planted pinelands due to a high burning temperature. Using Lee Memorial Forest, a Louisiana State University AgCenter property in Washington Parish as a study site, this thesis explores cogongrass in Louisiana with emphasis on soil microbes and soil legacy effects on native plant species. Cogongrass populations at Lee Memorial Forest were more …

Design Of Metamaterials For Optics, Abiti Adili

LSU Doctoral Dissertations

First part of this dissertation studies the problem of designing metamaterial crystals with double negative effective properties for applications in optics by investigating the conditions necessary for generating novel dispersion properties in a metamaterial crystal with subwavelength microstructure. This provides novel optical properties created through local resonances tied to the geometry of the media in subwavelength regime.

In the second part, this dissertation studies the representation formula used to describe band structures in photonic crystals with plasmonic inclusions. By using layer potential techniques, a magnetic dipole operator describing the tangential component of the electrical field generated by magnetic distribution is …

In Vitro Evaluation Of Ovarian Cancer Tumorigenesis As A Function Of Quinone Oxidoreducatse-1 And Cell Phenotype, Milcah S. Jackson

LSU Doctoral Dissertations

In vitro multicellular spheroids are attractive model systems for assessing genetic and epigenetic changes that occur in diseased tissues. Understanding how such alterations in gene and subsequent protein expression affect disease progression and metastasis, drug resistance, and recurrence is of great interest in cancer research. In this regard, examining expression and activity of proteins, such as those with cytoprotective ability that are overexpressed in cancer cells, in addition to cell phenotype (i.e., stem-like, epithelial, mesenchymal, or mixed), are two ways to evaluate genetic and epigenetic changes. Moreover, determining the impact that cytoprotective proteins and cell phenotype have on tumor formation …

Decadal Changes Of Soil Physiochemical Properties In A Freshwater Wetland After Hydrologic Reconnection, Alina Spera

LSU Master's Theses

Sediment, nutrient deprivation and salt water intrusion, among other factors, are driving widespread organic soil collapse and marsh loss in the Mississippi River Delta. Freshwater diversions were designed to reintroduce Mississippi River water and dissolved nutrients into the adjacent basins to manage salinity and slow land loss by maintaining marsh vegetation and nutrient cycling functions. These diversions are controversial by a few, suggesting that nutrient enrichment without a sediment subsidy can lead to further wetland loss in the receiving basins. In this study, a soil characterization is presented for the receiving marsh of the Davis Pond diversion in 2007, just …

Spatiotemporal Impact Of Snow On Underwater Photosynthetically Active Radiation In Taylor Valley, East Antarctica, Madeline E. Myers

LSU Master's Theses

The role of snow on underwater photosynthetically active radiation (UW PAR) in the McMurdo Dry Valleys (MDVs) has been understudied due to lack of a detailed snowfall record. Research has shown that a relationship between snow cover and UW PAR exists, but the extent has never been evaluated in great detail. Although annual snowfall values in the MDVs are low (3 to 50 mm water equivalent annually), trends of increasing snowfall on the continent under future warming conditions could lead to an increased role for snow in regulating UW PAR (and associated primary productivity). Here, I discuss evidence from the …

Matrix Recharge In A Shrink-Swell Floodplain Forest Soil, Savannah R. Morales

LSU Master's Theses

Despite the global distribution of fine-grained Vertisols, the hydrology of these floodplain soils is still not well understood. Vertisols shrink and swell depending on soil moisture leading to a range of soil pore sizes, from large macropore cracks to smaller micropores, and consequently a range of hydraulic conductivities. Despite the plethora of research indicating the importance of both flooding and soil moisture in floodplain ecosystems, the specific role that flooding plays in soil moisture recharge has been less widely studied and remains of interest. Blue food dye and deuterated water were used as tracers to determine the role of the …

Dehn Functions Of Bestvina-Brady Groups, Yu-Chan Chang

LSU Doctoral Dissertations

In this dissertation, we prove that if the flag complex on a finite simplicial graph is a 2-dimensional triangulated disk, then the Dehn function of the associated Bestvina--Brady group depends on the maximal dimension of the simplices in the interior of the flag complex. We also give some examples where the flag complex on a finite simplicial graph is not 2-dimensional, and we establish a lower bound for the Dehn function of the associated Bestvina--Brady group.

Chemosensors Based On Higher Energy Gap Control Of Fluorescence In Conjugated Polymers, Chun-Han Wang

LSU Doctoral Dissertations

Conjugated polymers (CPs) have been widely investigated for their remarkably high sensitivity towards various chemical detection applications. CPs can exhibit effective transduction of certain analyte binding events through changes in fluorescence. These changes include amplified fluorescence quenching ("turn-offmechanism") or an appearance of a fluorescent emission ("turn-onmechanism"). Whereas turn-offsensors can be readily designed and are widely used, amplifying turn-onsensors, from a practical standpoint, are more convenient to use but are more challenging to design.

This dissertation primarily focuses on the development and study of conjugated polymer based amplifying turn-onfluorescence chemosensors utilizing the novel “higher …

A Study On Large-Scale Deep Learning In Bioinformatics And Biomedical Applications, Shayan Shams

LSU Doctoral Dissertations

Recent advances in Artificial Intelligence and deep learning have provided researchers in various fields insights into the analysis of multiple datasets. These applications include image analysis, text analysis, and many more. However, the effectiveness of deep learning in some areas, such as biomedical imaging and genomic research, has been overshadowed by the variance in the types and complexity of data. This is in addition to the expensive labeling process and the limited size of datasets in these fields. These challenges require advanced deep learning models capable of learning from a small dataset and also from a small number of labeled …

Stray Radiation Dose From X-Ray And Proton Beam Radiation Therapies, Christopher William Schneider

LSU Doctoral Dissertations

The growing population of cancer survivors at risk of radiation induced side-effects is a public health concern. These side-effects include serious conditions such as second cancers, the majority of which occur outside of the primary treatment volume. Radiotherapy treatment planning systems systematically underestimate the dose to tissues out-of-field. Attempts to predict and reduce the risks of radiogenic side effects require accurate and personalized knowledge of the out-of-field radiation dose to patients. The long-term goal of this research is to provide clinical and research tools necessary to reduce the risk of radiotherapy side effects and improve the health outcomes of radiotherapy …

Approaches For Sample Characterization And Lithography With Nanoparticles Using Modes Of Scanning Probe Microscopy, Jayne C. Garno, Temitope O. Jegede, Kathryn B. Mckee, Melissia Porter, Autumn E. Webb, Jin Gyun Lee, Neepa Mk Kuruppu Arachchige, Justin R. Ragains, Noémie Elgrishi

Faculty Publications

Measurement and imaging modes of scanning probe microscopy (SPM) have been routinely applied for characterizing systems of nanoparticles; however the evolution of fabrication methods to prepare arrangements of nanoparticles remains a challenge. Reproducible fabrication of surface structures which integrate nanoparticles within ultra-small patterns will require innovative approaches to achieve high throughput and precision. Strategies for nanoscale lithography have been introduced for preparing defined arrangements of nanoparticles on surfaces based on physical or chemical interactions. For example, physisorption was employed for attaching nanoparticles based on colloidal lithography and site-directed assembly. Microfabricated atomic force microscope (AFM) tips with capillary channels have been …

Rare Earth Geochemistry Of Apatitic Fossils From The Middle-Upper Ordovician Southern Margin Of Laurentia, Rafael Adrian Villanueva

LSU Master's Theses

Widespread deposition of phosphate and a transition from tropical to cool water carbonates is seen throughout Middle-Upper Ordovician Nashville Dome area spanning the M4/M5 sequence boundary. Hypotheses explaining the onset of these lithologic changes have included the onset of glaciation, drawdown of CO₂ related to the Guttenburg Isotope Carbon Excursion (GICE), and siliciclastic weathering, yet none of these studies have provided definitive evidence that shows any of these are the sole factor driving paleoenvironmental changes across the M4/M5 boundary. In order to test whether rapid subsidence along the southeastern margin of Laurentia may have caused an influx of phosphate …

High-Performance Computing Frameworks For Large-Scale Genome Assembly, Sayan Goswami

LSU Doctoral Dissertations

Genome sequencing technology has witnessed tremendous progress in terms of throughput and cost per base pair, resulting in an explosion in the size of data. Typical de Bruijn graph-based assembly tools demand a lot of processing power and memory and cannot assemble big datasets unless running on a scaled-up server with terabytes of RAMs or scaled-out cluster with several dozens of nodes. In the first part of this work, we present a distributed next-generation sequence (NGS) assembler called Lazer, that achieves both scalability and memory efficiency by using partitioned de Bruijn graphs. By enhancing the memory-to-disk swapping and reducing the …

Field Drilling Data Cleaning And Preparation For Data Analytics Applications, Daniel Cardoso Braga

LSU Master's Theses

Throughout the history of oil well drilling, service providers have been continuously striving to improve performance and reduce total drilling costs to operating companies. Despite constant improvement in tools, products, and processes, data science has not played a large part in oil well drilling. With the implementation of data science in the energy sector, companies have come to see significant value in efficiently processing the massive amounts of data produced by the multitude of internet of thing (IOT) sensors at the rig. The scope of this project is to combine academia and industry experience to analyze data from 13 different …

Maximizing And Modeling Malonyl-Coa Production In Escherichia Coli, Tatiana Thompson Silveira Mello

LSU Master's Theses

In E. coli, fatty acid synthesis is catalyzed by the enzyme acetyl-CoA carboxylase (ACC), which converts acetyl-CoA into malonyl-CoA. Malonyl-CoA is a major building block for numerous of bioproducts. Multiple parameters regulate the homeostatic cellular concentration of malonyl-CoA, keeping it at a very low level. Understanding how these parameters affect the bacterial production of malonyl-CoA is fundamental to maximizing it and its bioproducts. To this end, competing pathways consuming malonyl-CoA can be eliminated, and optimal nutritional and environmental conditions can be provided to the fermentation broth. Most previous studies utilized genetic modifications, expensive consumables, and high-cost quantification methods, making …

Reproductive Parameters And Methodologies For The Culture Of Golden Topminnows (Fundulus Chrysotus) And Bluenose Shiners (Pteronotropis Welaka), Jacob A. Fetterman

LSU Master's Theses

The global ornamental fish trade has expanded over the past 20 years, requiring captive rearing methods to be improved or developed for species of interest. Aquaculture of desirable species is preferable over wild harvest to conserve natural habitats and biodiversity. This thesis focused on improving culture methods for Golden Topminnows Fundulus chrysotus and developing culture methods for Bluenose Shiners Pteronotropis welaka, both native fishes of the southeastern United States with ornamental demand. A combination of reproductive metric analyses, examination of historical collections, and captive spawning trials were employed to target specific objectives for each species. In female Golden Topminnows, …

Increasing C-Additive Processes, Nadjib Bouzar

Communications on Stochastic Analysis

No abstract provided.