Physical Sciences and Mathematics Commons^™

Patterns Of Academic Help-Seeking In Undergraduate Computing Students, Augie Doebling

Master's Theses

Knowing when and how to seek academic help is crucial to the success of undergraduate computing students. While individual help-seeking resources have been studied, little is understood about the factors influencing students to use or avoid certain re- sources. Understanding students’ patterns of help-seeking can help identify factors contributing to utilization or avoidance of help resources by different groups, an important step toward improving the quality and accessibility of resources. We present a mixed-methods study investigating the help-seeking behavior of undergraduate computing students. We collected survey data (n = 138) about students’ frequency of using several resources followed by one-on-one …

Fire Effects In Montane Meadows, Rosie Deak

Master's Theses

The impact of forest fires on downstream meadow communities across California is of great ecological interest, as meadows are an important source of biodiversity in this region. Over a century of fire suppression has led to increased forest stand densities, which in turn has resulted in less water availability due to increased transpiration of densely growing trees. This potentially has left less available water for downstream plant communities in meadows. If true, then high mortality wildfires in surrounding forest are predicted to lead to an increase in available downstream moisture where obligate and facultative-wetland taxa increase and dry-adapted upland taxa …

The Close Agn Reference Survey (Cars): Ifu Survey Data And The Bh Mass Dependence Of Long-Term Agn Variability, B. Husemann, M. Singha, J. Scharwächter, R. Mcelroy, J. Neumann, I. Smirnova-Pinchukova, T. Urrutia, S. A. Baum, V. N. Bennert, F. Combes, S. M. Croom, T. A. Davis, Y. Fournier, A. Galkin, M. Gaspari, H. Enke, M. Krumpe, C. P. O'Dea, M. Pérez-Torres, T. Rose, G. R. Tremblay, C. J. Walcher

Physics

Context. Active galactic nuclei (AGN) are thought to be intimately connected with their host galaxies through feeding and feedback processes. A strong coupling is predicted and supported by cosmological simulations of galaxy formation, but the details of the physical mechanisms are still observationally unconstrained.

Aims. Galaxies are complex systems of stars and a multiphase interstellar medium (ISM). A spatially resolved multiwavelength survey is required to map the interaction of AGN with their host galaxies on different spatial scales and different phases of the ISM. The goal of the Close AGN Reference Survey (CARS) is to obtain the necessary spatially resolved …

Hierarchical Classification Of Deep-Sea Videos, Lubomir Stanchev, Hanson Egbert

Computer Science and Software Engineering

This research is based on previous research that proposes the use of AI algorithms to automatically annotate deep-sea videos [1]. Regardless of whether a deep-sea video is annotated automatically or by a human expert, some frames are difficult to annotate because one or more objects may be ambiguous to interpret. For example, the Funiculina and Umbellula Lindahli are two types of sea pens that are difficult to distinguish. Similarly, an object may be easily identified as a fish, but the type of fish may be difficult to determine. For these types of circumstances, we propose a hierarchical classification algorithm that …

The Lick Agn Monitoring Project 2016: Velocity-Resolved Hβ Lags In Luminous Seyfert Galaxies, Vivian U, Aaron J. Barth, H. Alexander Vogler, Hengxiao Guo, Tommaso Treu, Vardha N. Bennert, Gabriela Canalizo, Alexei V. Filippenko, Elinor Gates, Frederick Hamann, Michael D. Joner, Matthew A. Malkan, Anna Pancoast, Peter R. Williams, Jong-Hak Woo, Bela Abolfathi, L. E. Abramson, Stephen F. Armen, Hyun-Jin Bae, Thomas Bohn, Benjamin D. Boizelle, Azalee Bostroem, Andrew Brandel, Thomas G. Brink, Sanyum Channa, M. C. Cooper, Maren Cosens, Edward Donohue, Sean P. Fillingham, Diego González-Buitrago, Goni Halevi, Andrew Halle, Carole E. Hood, Keith Horne, J. Chuck Horst, Maxime De Kouchkovsky, Benjamin Kuhn, Sahana Kumar, Douglas C. Leonard, Donald Loveland, Christina Manzano-King, Ian Mchardy, Raúl Michel, Melanie Kae B. Olaes, Daeseong Park, Songyoun Park, Liuyi Pei, Timothy W. Ross, Jordan N. Runco, Jenna Samuel, Javier Sánchez, Bryan Scott, Remington O. Sexton, Jaejin Shin, Isaac Shivvers, Chance L. Spencer, Benjamin E. Stahl, Samantha Stegman, Isak Stomberg, Stefano Valenti, L. Villafaña, Jonelle L. Walsh, Heechan Yuk, Weikang Zheng

Physics

We carried out spectroscopic monitoring of 21 low-redshift Seyfert 1 galaxies using the Kast double spectrograph on the 3 m Shane telescope at Lick Observatory from 2016 April to 2017 May. Targeting active galactic nuclei (AGNs) with luminosities of λLλ(5100 Å) ≈ 1044 erg s−1 and predicted Hβ lags of ∼20–30 days or black hole masses of 107–108.5 M⊙, our campaign probes luminosity-dependent trends in broad-line region (BLR) structure and dynamics as well as to improve calibrations for single-epoch estimates of quasar black hole masses. Here we present the first results from the campaign, including …

The Lick Agn Monitoring Project 2016: Velocity-Resolved Hβ Lags In Luminous Seyfert Galaxies, Vivian U, Aaron J. Barth, H. Alexander Vogler, Hengxiao Guo, Tommaso Treu, Vardha N. Bennert, Gabriela Canalizo, Alexei V. Filippenko, Elinor Gates, Frederick Hamann, Michael D. Joner, Matthew A. Malkan, Anna Pancoast, Peter R. Williams, Jong-Hak Woo, Bela Abolfathi, L. E. Abramson, Stephen F. Armen, Hyun-Jin Bae, Thomas Bohn, Benjamin D. Boizelle, Azalee Bostroem, Andrew Brandel, Thomas G. Brink, Sanyum Channa, M. C. Cooper, Maren Cosens, Edward Donohue, Sean P. Fillingham, Diego González-Buitrago, Goni Halevi, Andrew Halle, Carol E. Hood, Keith Horne, J. Chuck Horst, Maxime De Kouchkovsky, Benjamin Kuhn, Sahana Kumar, Douglas C. Leonard, Donald Loveland, Christina Manzano-King, Ian Mchardy, Raúl Michel, Melanie Kae B. Olaes, Daeseong Park, Songyoun Park, Liuyi Pei, Timothy W. Ross, Jordan N. Runco, Jenna Samuel, Javier Sánchez, Bryan Scott, Remington O. Sexton, Jaejin Shin, Isaac Shivvers, Chance L. Spencer, Benjamin E. Stahl, Samantha Stegman, Isak Stomberg, Stefano Valenti, L. Villafaña, Jonelle L. Walsh, Heechan Yuk, Weikang Zheng

Physics

We carried out spectroscopic monitoring of 21 low-redshift Seyfert 1 galaxies using the Kast double spectrograph on the 3 m Shane telescope at Lick Observatory from 2016 April to 2017 May. Targeting active galactic nuclei (AGNs) with luminosities of λLλ(5100 Å) ≈ 1044 erg s−1 and predicted Hβ lags of ∼20–30 days or black hole masses of 107–108.5 M⊙, our campaign probes luminosity-dependent trends in broad-line region (BLR) structure and dynamics as well as to improve calibrations for single-epoch estimates of quasar black hole masses. Here we present the first results from the campaign, including …

Measuring Hydraulic Conductivity Using Flexible Walled Permeameter And Astm Method D5084, Bradon Povah

Master of Science in Environmental Sciences and Management Projects

This project is a guide that details the protocol synthesized from the ASTM D5084-16a method, the Humboldt control panel manual, and the time spent learning the intricacies of the Permeability Cell instrument.

Apache Science Team, Denise L. Jameson

Agricultural Education: Graduate Internship Reports

Sanger High school has the unique opportunity to offer a wide array of classes and pathways for students to take so that they can meet their educational goals of graduation the move on to higher education or starting a career right out of high school. Students have all these opportunities and benefits to have a strong start out of high school, but ultimately students are unaware of what jobs are related to those choices or pathways that they have decided to take part in. Apache Science Team allows for students to experience and learn about many different careers and opportunities …

Lorentz Violations And The Casimir Effect, Samuel G. Christensen

Physics

The background and calculation for the corrections to the Casimir Energy stored on parallel conducting plates due to minimal violations of Lorentz invariance are presented as a test of the Standard Model. A direction-dependent photon dispersion relation using operators of dimension 4 and higher is used in the calculation of the spacetime anisotropy correction terms to the Casimir energy. The calculation includes discussion of Riemann zeta function regularization and its equivalence to Euler-Maclaurin sum-integral formulas in a Casimir effect calculation. The two plate geometry result is mapped onto a one plate and sphere geometry to cater to modern precision tests …

Rigid Aggregation Of Inclusions Embedded In Quasi 2d Fluids, Natalie Xochitl Ryan

Physics

Diffusion is a transport process common in several biological systems. In this process particles of different species mix together through random (stochastic) motion at molecular length scales. Diffusion in fluids is unique as the coupling of the flow and fluid have been found to produce giant concentration fluctuations. The molecular length scale of these concentration fluctuations are magnitudes larger than the movement of the particles themselves, earning them the title “giant”. The diffusion of particles in bio-membranes displays a combination of 2D and 3D hydrodynamic properties; the movements of the particles are restricted to the plane of the membrane and …

Millipyde: A Cross-Platform Python Framework For Transparent Gpu Acceleration, James B. Asbury

Master's Theses

The prevalence of general-purpose GPU computing continues to grow and tackle a wider variety of problems that benefit from GPU-acceleration. This acceleration often suffers from a high barrier to entry, however, due to the complexity of software tools that closely map to the underlying GPU hardware, the fast-changing landscape of GPU environments, and the fragmentation of tools and languages that only support specific platforms. Because of this, new solutions will continue to be needed to make GPGPU acceleration more accessible to the developers that can benefit from it. AMD’s new cross-platform development ecosystem ROCm provides promise for developing applications and …

Jited: A Framework For Jit Education In The Classroom, Caleb Watts

Master's Theses

The study of programming languages is a rich field within computer science, incorporating both the abstract theoretical portions of computer science and the platform specific details. Topics studied in programming languages, chiefly compilers or interpreters, are permanent fixtures in programming that students will interact with throughout their career. These systems are, however, considerably complicated, as they must cover a wide range of functionality in order to enable languages to be created and run. The process of educating students thus requires that the demanding workload of creating one of the systems be balanced against the time and resources present in a …

Plasma-Laser Wakefield Acceleration, Jonathan Babu

Physics

Many texts detailing the derivations and science of Wakefield Acceleration are aimed at graduate and doctorate level scholars, and these may seem intimidating to new physics students. This paper is meant to be an introduction to the nature of plasmas, lasers, laser-plasma interactions, and Laser Wakefield Acceleration (LWFA), with sources given where extra detail may be required. I recognize that this paper is not meant to be an all-encompassing review on the nature of the topics, as these topics are complex and subject of entire textbooks. Instead, I aim to provide an introduction to these topics to a college-level scholar …

Modeling Cherenkov Light Detection Timing For The Very Energetic Radiation Imaging Telescope Array System, Keilan Finn Ramirez

Physics

The Very Energetic Radiation Imaging Telescope Array System (VERITAS) is an array of four 12-meter telescopes which use the Imaging Atmospheric Cherenkov Technique to conduct high-energy gamma-ray astronomy. VERITAS detects magnitude and location information associated with Cherenkov light, and uses this information to indirectly observe gamma-rays through a software reconstruction process. VERITAS also records timing information corresponding to Cherenkov light detection, and this additional information could theoretically be incorporated into the reconstruction process to improve the accuracy of gamma-ray observations. The first step to including timing information is to understand when Cherenkov light detection would be expected from a known …

Swarming Oscillators With Time-Delayed Interactions, Nicholas S. Blum

Physics

We investigate the role of delay in the collective dynamics of particles that swarm in space and possess an internal oscillatory degree of freedom, called swarmalators. Swarmalators were introduced recently by O’Keeffe, Hong, and Strogatz in Nature Communications 8, 1504 (2017). The addition of a time delay into the system of swarmalators was motivated by the biology of early embryonic development. This delay leads to a rich phenomenology, which includes two new collective states, which we call "semi-static crystal" and "boiling". In the semi-static crystal state, all particles in a cluster undergo decaying radial oscillations completely in phase with one …

Procedural Plant Generation With Floragen, Christopher Wesley Wright

Computer Engineering

A particularly challenging aspect of game design revolves around asset creation. Often new developers become lost in nuances and time investment required to learn 3d asset creation software. While many game development platforms provide an internal asset store, these assets are often expensive or limited. These assets restrict the flexibility for a creator to fully control the product they create. A critical asset type in many games is flora. Good looking trees and plants add environmental variation when added properly. In this project, I designed and implemented an add-on dubbed FloraGen to the 3D modeling software Blender in which users …

Plant Disease Detection Through Convolutional Neural Networks: A Survey Of Existing Literature, Best Practices, And Implementation, Kevin Label

Master's Theses

In the United States alone, common diseases spread among plants account for billions of dollars lost in crop yield each year. This issue is exacerbated in countries with less infrastructure to defend against crop epidemics, and can lead to famine and forced migration. Farmers can seek the help of plant pathology experts to defend against diseases and detect crop irregularities early on. However, access to experts can be difficult, and even those trained in the field may miss symptoms before it is too late. To assist in early disease detection, a number of papers have been released on the potential …

Adapting Single-View View Synthesis With Multiplane Images For 3d Video Chat, Anurag Venkata Uppuluri

Master's Theses

Activities like one-on-one video chatting and video conferencing with multiple participants are more prevalent than ever today as we continue to tackle the pandemic. Bringing a 3D feel to video chat has always been a hot topic in Vision and Graphics communities. In this thesis, we have employed novel view synthesis in attempting to turn one-on-one video chatting into 3D. We have tuned the learning pipeline of Tucker and Snavely's single-view view synthesis paper — by retraining it on MannequinChallenge dataset — to better predict a layered representation of the scene viewed by either video chat participant at any given …

On The Mobility Of Small Aperture Telescopes For Initial Orbit Determination And Apparent Magnitude Derivation Of Low Earth Satellites, Jonathan Ian Hernandez

Master's Theses

Maintaining Space Domain Awareness (SDA) of satellites in low Earth orbit (LEO) requires effective methods of tracking and characterization. Optical measurements of these objects are generally sparse due to limited access intervals and high angular rates. Light pollution and geographic obstructions may also preclude consistent observations. However, a mobile small aperture telescope grants the ability to minimize such environmental effects, thereby increasing capture likelihoods for objects within this regime. By enhancing LEO satellite visibility in this way, extensive orbital and visual data are obtainable.

An 8-inch Meade LX200GPS telescope equipped with a Lumenera SKYnyx2-0M CCD camera comprises the system that …

Hα Reverberation Mapping Of The Intermediate-Mass Active Galactic Nucleus In Ngc 4395, Hojin Cho, Jong-Hak Woo, Tommaso Treu, Peter R. Williams, Stephen F. Armen, Aaron J. Barth, Vardha N. Bennert, Wanjin Cho, Alexei V. Filippenko, Elena Gallo, Jaehyuk Geum, Diego González-Buitrago, Kayhan Gültekin, Edmund Hodges-Kluck, John C. Horst, Seong Hyeon Hwang, Wonseok Kang, Minjin Kim, Taewoo Kim, Douglas C. Leonard, Matthew A. Malkan, Raymond P. Remigio, David J. Sand, Jaejin Shin, Donghoon Son, Hyun-Il Sung, Vivian U

Physics

We present the results of a high-cadence spectroscopic and imaging monitoring campaign of the active galactic nucleus (AGN) of NGC 4395. High signal-to-noise-ratio spectra were obtained at the Gemini-N 8 m telescope using the GMOS integral field spectrograph (IFS) on 2019 March 7 and at the Keck I 10 m telescope using the Low-Resolution Imaging Spectrometer with slit masks on 2019 March 3 and April 2. Photometric data were obtained with a number of 1 m-class telescopes during the same nights. The narrow-line region (NLR) is spatially resolved; therefore, its variable contributions to the slit spectra make the standard procedure …

A Local Baseline Of The Black Hole Mass Scaling Relations For Active Galaxies. Iv. Correlations Between MBh And Host Galaxy Σ, Stellar Mass, And Luminosity, Vardha N. Bennert, Tommaso Treu, Xuheng Ding, Isak Stomberg, Simon Birrer, Tomas Snyder, Matthew A. Malkan, Andrew W. Stephens, Matthew W. Auger

Physics

The tight correlations between the mass of supermassive black holes (M_BH) and their host-galaxy properties have been of great interest to the astrophysical community, but a clear understanding of their origin and fundamental drivers still eludes us. The local relations for active galaxies are interesting in their own right and form the foundation for any evolutionary study over cosmic time. We present Hubble Space Telescope optical imaging of a sample of 66 local active galactic nuclei (AGNs); for 14 objects, we also obtained Gemini near-infrared images. We use state-of-the-art methods to perform surface photometry of the AGN host …

Bioplastics In The Consumer Market, Elena Strom

Master of Science in Environmental Sciences and Management Projects

The global production and mismanagement of plastic has led to plastics deposited and scatted across marine environments. Conventional plastic, which most Americans encounter every day, is produced from fossil fuels and lacks the ability to fully break down upon disposal, breaking down into microplastics that can remain in the natural environment for hundreds of years. Moving away from petroleum-based plastics could lead to a reduction in greenhouse gas emissions and decrease plastic particles in the ocean. Based on existing literature, there are three biopolymers that could serve as replacements to conventional plastics in the marketplace. These biopolymers are seen as …

Assessing The Water Quality Of Three Bar-Built Estuaries In The Central Coast Of California, Micaelina Sarmiento Martinez

Master of Science in Environmental Sciences and Management Projects

Estuaries are coastal confluences with innumerable ecosystem services. With the continuous change in land use including the increasing number of people moving to live in coastal areas and on-going agricultural operations, these coastal systems are being adversely impacted. Climate change is also negatively affecting estuaries. Subsequently, this research study assessed the water quality, monthly, at three different locations of three bar-built estuaries in the Central Coast of California. Water quality was evaluated by the change in chlorophyll-a, nitrogen, phosphorus, pH, temperature, dissolved oxygen, and specific conductivity over the course of 19 months. The eutrophication potential and the role of open …

An Evaluation Of The Central Coast Rangeland Coalition: Trust And Other Factors Important For Collaborative Conservation, Dustin Tran

Master of Science in Environmental Sciences and Management Projects

The proliferation of collaborative partnerships across the western United States and the lack of tools and protocols to evaluate them have been well documented. As the number and types (conservation-based, policy actions, information sharing) of collaboratives rises, there is a need for research that aims to evaluate these partnerships' performance and collaborative process considering their importance and potential to solve complex ecological, economic, and social problems. This study aims to contribute to this pool of research by interviewing the Steering Committee (SC) members of the Central Coast Rangeland Coalition (CCRC), a volunteer-based and information-sharing rangeland collaborative coalition. We evaluate and …

A Comparative Review Of Cell-Based Mariculture And Conventional Seafood Life Cycle Assesments, Kyle Rathbone

Master of Science in Environmental Sciences and Management Projects

The global fishing and aquaculture industries inflict significant environmental impacts on our planet’s oceans. The overfishing, pollution, and environmental degradation currently caused by these industries threatens the sustainability of marine ecological and industrial systems. Despite this, demand for seafood is expected to rise in the coming decades to service the growing global population with nutrient-rich foods. The difficulty in reconciling the need for drastic improvements in marine sustainability and the need to continue meeting global seafood demand has produced an interest in alternative solutions to seafood production. The emerging cell-based foods industry may hold the potential to produce seafood products …

Take The Lead: Toward A Virtual Video Dance Partner, Ty Farris

Master's Theses

My work focuses on taking a single person as input and predicting the intentional movement of one dance partner based on the other dance partner's movement. Human pose estimation has been applied to dance and computer vision, but many existing applications focus on a single individual or multiple individuals performing. Currently there are very few works that focus specifically on dance couples combined with pose prediction. This thesis is applicable to the entertainment and gaming industry by training people to dance with a virtual dance partner.

Many existing interactive or virtual dance partners require a motion capture system, multiple cameras …

Climate Adaptation And Water Conservation Decision-Making In Paso Robles, California Vineyards, Christopher R. Klier

Master's Theses

This paper examines vineyard perceptions and adoption of climate change adaptation and water conservation measures in the Paso Robles American Viticultural Area (AVA). A survey was distributed to all 220 vineyards and vineyard management companies that operate in the AVA, with a 53.64% response rate. The objective of the survey was to determine vineyard manager and owner attitudes towards climate change and adaptation, as well as their perceptions of how these threats would impact their operation. A second objective was to document the current level of water conservation and climate adaptation while identifying the barriers and opportunities for further adoption …

Analysis Of The Slo Bay Microbiome From A Network Perspective, Lien Viet Nguyen

Master's Theses

Microorganisms are key players in the ecosystem functioning. In this thesis, we developed a framework to preprocess raw microbiome data, build a correlation network, and analyze co-occurrence patterns between microbes. We then applied this framework to a marine microbiome dataset. The dataset used in this study comes from a year-long time-series to characterize the microbial communities in our coastal waters off the Cal Poly Pier. In analyzing this dataset, we were able to observe and confirm previously discovered patterns of interactions and generate hypotheses about new patterns. The analysis of co-occurrences between prokaryotic and eukaryotic taxa is relatively novel and …

Rapid Warming Events In A Small Coastal Upwelling Embayment, Tatjana E. Ellis

Physics

Temperature variability in the nearshore coastal ocean influences various biological processes and can drive changes in biodiversity and habitat range. Despite recent progress, there are still significant gaps in the understanding of drivers of temperature variability in upwelling bays, particularly at higher frequencies. In this study, we analyzed a decade of nearshore temperature measurements both inside and outside a small coastal embayment located in central California [San Luis Obispo (SLO) bay], as well as temperature data from satellites, to characterize rapid warming events. We found that rapid warming events, defined using rates of temperature change across different thresholds, occurred more …

Spatial And Temporal Variability Of Circulation Patterns Within A Small Coastal Embayment During An Upwelling/Relaxation Cycle, Laurent F. Siroit

Physics

In eastern boundary current systems, wind-driven coastal upwelling is the dominant diver of physical, chemical, and biological variability. Near coastal embayments, complex circulation patterns develop during upwelling forcing, and time-dependent descriptions of these patterns for smaller systems (i.e., width and length scales ≤ 20 km) are limited. In this study, we analyze surface and subsurface current patterns in relation to upwelling wind forcing in San Luis Obispo (SLO) Bay, a small coastal upwelling embayment in central California, to investigate the formation and evolution of an upwelling jet and surface current convergence region during a large upwelling-relaxation event. We found that …