Medicine and Health Sciences Commons^™

A Statistical Framework For Multi-Trait Rare Variant Analysis In Large-Scale Whole-Genome Sequencing Studies, Xihao Li, Han Chen, Margaret Sunitha Selvaraj, Eric Van Buren, Hufeng Zhou, Yuxuan Wang, Ryan Sun, Zachary R Mccaw, Zhi Yu, Min-Zhi Jiang, Daniel Dicorpo, Sheila M Gaynor, Rounak Dey, Donna K Arnett, Emelia J Benjamin, Joshua C Bis, John Blangero, Eric Boerwinkle, Donald W Bowden, Jennifer A Brody, Brian E Cade, April P Carson, Jenna C Carlson, Nathalie Chami, Yii-Der Ida Chen, Joanne E Curran, Paul S De Vries, Myriam Fornage, Nora Franceschini, Barry I Freedman, Charles Gu, Nancy L Heard-Costa, Jiang He, Lifang Hou, Yi-Jen Hung, Marguerite R Irvin, Robert C Kaplan, Sharon L R Kardia, Tanika N Kelly, Iain Konigsberg, Charles Kooperberg, Brian G Kral, Changwei Li, Yun Li, Honghuang Lin, Ching-Ti Liu, Ruth J F Loos, Michael C Mahaney, Lisa W Martin, Rasika A Mathias, Braxton D Mitchell, May E Montasser, Alanna C Morrison, Take Naseri, Kari E North, Nicholette D Palmer, Patricia A Peyser, Bruce M Psaty, Susan Redline, Alexander P Reiner, Stephen S Rich, Colleen M Sitlani, Jennifer A Smith, Kent D Taylor, Hemant K Tiwari, Ramachandran S Vasan, Satupa'itea Viali, Zhe Wang, Jennifer Wessel, Lisa R Yanek, Bing Yu, Nhlbi Trans-Omics For Precision Medicine (Topmed) Consortium, Josée Dupuis, James B Meigs, Paul L Auer, Laura M Raffield, Alisa K Manning, Kenneth M Rice, Jerome I Rotter, Gina M Peloso, Pradeep Natarajan, Zilin Li, Zhonghua Liu, Xihong Lin

Faculty, Staff and Student Publications

Large-scale whole-genome sequencing (WGS) studies have improved our understanding of the contributions of coding and noncoding rare variants to complex human traits. Leveraging association effect sizes across multiple traits in WGS rare variant association analysis can improve statistical power over single-trait analysis, and also detect pleiotropic genes and regions. Existing multi-trait methods have limited ability to perform rare variant analysis of large-scale WGS data. We propose MultiSTAAR, a statistical framework and computationally scalable analytical pipeline for functionally informed multi-trait rare variant analysis in large-scale WGS studies. MultiSTAAR accounts for relatedness, population structure and correlation among phenotypes by jointly analyzing multiple …

Ai-Integrated Cross-Disciplinary Liberal Arts Colloquium, Diana S. Perdue, Niloofar Gholamrezaei, Jennifer Krusinger, Shannon Hogan

Teaching Repository of AI-Infused Learning

What began organically as an AI-focused collaboration between faculty in different disciplines along with researchers in the college’s Center for Instructional Innovation, has evolved into college-wide pedagogical workshops and the development of a studio model that affects courses, programs, and paradigms for faculty scholarship.

Lessons from these collaborations inform understandings of how key features of liberal arts education can be supported through intentional AI-integration within a Cross-Disciplinary Liberal Arts Colloquium. More specifically, this colloquium offers recommendations on adapting a collaborative, interdisciplinary, and reflective studio model to in-person, online, and hybrid educational environments facilitated through a Technological Pedagogical Content Knowledge (TPACK) …

Uncovering Acoustic Biomarkers To Classify Parkinson Disease Through Machine Learning, Felix Yeboah

Data Science and Data Mining

The early detection of diseases profoundly influences treatment efficacy, and accurate classification methodologies are essential for effective disease identification. In this project, we examined fve different classifers—Logistic Regression, Gaussian Naive Bayes, K Nearest Neighbor (KNN), Extreme Gradient Boosting (XGBoost), and Support Vector Machines—and evaluated their performance in detecting Parkinson’s disease (PD) based on voice features. The study aims to identify the best classifier for detecting PD. XGBoost performed the best, with an accuracy of 91% on the full dataset. After variable selection, KNN had the best performance with an accuracy of 91%. These findings suggest that Machine learning algorithms(classifiers) can …

Deep Learning-Based Auto-Segmentation For Liver Yttrium-90 Selective Internal Radiation Therapy, Jun Li, Wookjin Choi, Rani Anne

Department of Radiation Oncology Faculty Papers

The aim was to evaluate a deep learning-based auto-segmentation method for liver delineation in Y-90 selective internal radiation therapy (SIRT). A deep learning (DL)-based liver segmentation model using the U-Net3D architecture was built. Auto-segmentation of the liver was tested in CT images of SIRT patients. DL auto-segmented liver contours were evaluated against physician manually-delineated contours. Dice similarity coefficient (DSC) and mean distance to agreement (MDA) were calculated. The DL-model-generated contours were compared with the contours generated using an Atlas-based method. Ratio of volume (RV, the ratio of DL-model auto-segmented liver volume to manually-delineated liver volume), and ratio of activity (RA, …

Challenges And Opportunities In The Dissemination Of Scientific Content: Insights From Media Professionals In Jordan, Ruba Mustafa Mohammad Dr, Mahmoud Ahmad Al-Rajabi Dr, Hala Nabil Amr

Middle East Journal of Communication Studies

This study explored the challenges and opportunities in disseminating scientific content from the perspective of media experts in Jordan. Using a descriptive methodology and a questionnaire, the research aimed to understand the landscape better. The sample included 343 media experts holding master's degrees or higher in various media fields, along with several journalists actively working in the sector. The study revealed several key findings. Chief among them are the numerous obstacles hindering the dissemination of scientific content in Jordanian media. These include a lack of training for journalists on accessing new scientific information, a general absence of critical thinking skills …

The Degree Of Dependence Of The Jordanian Public On Social Media In Health Awareness Of Obesity Diseases (Survey Study), Jumana Irshiedat Dr, Kamel Khurshid Murad Prof

Middle East Journal of Communication Studies

The article aimed to reveal the dependency of social media platforms in educating the Jordanian public about obesity diseases and explore the cognitive, emotional, and behavioral effects on the Jordanian public. The survey method was adopted; an approach used in descriptive studies, and the questionnaire tool was used to a sample (357) of the Jordanian public in Amman. The study-produced results including the platform most used by the Jordanian public to receive knowledge about health awareness is WhatsApp in the first place, followed by Instagram and then Facebook. The results also showed that the health topics of most interest to …

The Energy Transition In The Jordanian Media, Hanan Al-Shiekh Dr

Middle East Journal of Communication Studies

The study aimed to clarify the role of scientific journalism towards stimulating investment in environmentally friendly renewable energy sources, which is one of the necessary challenges facing the Kingdom of Jordan for economic growth and social development, due to its heavy dependence on energy imports, which reflects negatively on the Jordanian economy. This study is one of the descriptive studies that focuses on describing a specific topic, as it is in the current reality, in terms of its general and detailed characteristics, including variables, elements, relationships, and influences, which are among the most prominent features of scientific journalism in terms …

The Role Of Television In Increasing Knowledge About Health Issues Among Jordanian Citizens, Izzat Mohammad Hijab Prof, Ahmad Oreqat Dr, Hani Al-Badri Dr

Middle East Journal of Communication Studies

This study explores the role of TV health programs in increasing the knowledge of Jordanian citizens about health issues. The study was based on the social survey methodology through a questionnaire distributed to a sample of 200 people from the city of Amman watching Jordan Television (JTV) health programs. The researcher concluded the following; a high watching for health programs, and that the Jordanians watch health programs with their family at home. The study also confirmed that the Jordanian benefits from health programs provided by JTV, and these programs are important and essential in educating citizens in health issues. Finally, …

01.27.2025 Ored Connect, Liz Williamson

ORED Newsletter

Data Science for Addiction Research

UM research and related activities as a new presidential administration transition occurs

Immuno-Bioinformatics Study Of Secondary Metabolites From Watercress Nasturtium Officinale As Immunostimulant In Whiteleg Shrimp Litopenaeus Vannamei By Targeting Peroxinectin And Scavenger Receptor Class B, Qurrota A’Yunin, Muhaimin Rifa’I, Maftuch Maftuch, Yoga Dwi Jatmiko, Muhammad Hermawan Widyananda, Triyanto Triyanto, Muhammad Tegar Handrianto

Karbala International Journal of Modern Science

The viral disease affects the whiteleg shrimp (Litopenaeus vannamei) and causes losses. Immunostimulants are recognized as a more environmentally friendly approach to disease management and antimicrobial properties of aquatic organisms. Watercress (Nasturtium officinale) is an aquatic plant species that contains antioxidant properties that can protect the organism from disease and boost the immune system. Shrimp rely heavily on innate immunity to combat infectious agents due to their absence of adaptive immunity. Peroxinectin and scavenger receptor class B (SRB) play essential roles in the shrimp defense system. This research employs a bioinformatic to assess the immunostimulatory potential …

An Investigation Of Travel Distance And Timeliness Of Breast Cancer Treatment Among A Diverse Cohort In The United States, Swann Arp Adams, Oluwole Adeyemi Babatunde, Whitney Zahnd, Peiyin Hung, Karen E. Wickersham, Nathaniel Bell Ph.D., Jan M. Eberth Ph.D.

Publications

Travel to and from distant cancer treatment facilities can place a significant burden on cancer patients, particularly rural and minority survivors. Thus, the purpose of our investigation was to examine the association between patient travel distance and delays in types of treatment for breast cancer (surgery, radiation, chemotherapy, and hormonal therapy) and treatment delays. Using a novel linkage between the state cancer registry and administrative data from Medicaid and a private insurance plan, 2155 BC patients were successfully linked to create the cohort. ArcGIS was used to geocode all case residences and treatment facility addresses and calculate network distance between …

Ethnic Disparities In Hba1c And Hypoglycemia Among Youth With Type 1 Diabetes: Beyond Access To Technology, Social Deprivation And Mean Blood Glucose, J. Pemberton, Zhide Fang, Stuart Chalew, S. Uday

School of Public Health Faculty Publications

Introduction The UK national pediatric diabetes audit reports higher HbA1c for children and young people (CYP) with type 1 diabetes (T1D) of Black ethnicity compared with White counterparts. This is presumably related to higher mean blood glucose (MBG) due to lower socioeconomic status (SES) and less access to technology. We aimed to determine if HbA1c ethnic disparity persists after accounting for the above variables. Research design and methods A retrospective analysis of participants who received structured education in continuous glucose monitoring (CGM) use was conducted at a tertiary center. HbA1c was paired with glucose metrics from 90-day CGM data. The …

Pull Or Play? The Interpretation Of A Novel, Ai-Powered On-Field Decision Support Tool., Lynne Becker, Dafne Badilla, Osho Yonzon, Xiaoyu Wu, Roland Rocafort, Erik Viogan Phd, Devansh Manocha

Journal for Sports Neuroscience

The document titled "Pull or Play? The interpretation of a novel, AI-powered on-field decision support tool" explores the development and application of the Injury Impact Severity Score (IISS)™ for assessing traumatic brain injuries (TBIs), particularly in sports settings. It addresses the limitations of current assessment tools like the Glasgow Coma Scale (GCS) and proposes a more objective approach using patient-reported data and machine learning algorithms.

Key points include:

• Background: TBIs are a significant health concern with under-reported cases and a lack of effective research. Current assessment tools like the GCS have limitations in accuracy and speed, especially in dynamic …

01.21.2025 Ored Connect, Liz Williamson

ORED Newsletter

SmartTech MS Advanced Manufacturing Prize

Mileage Rate Increases

Meth Mortality Rate Increases

Feasibility And Acceptability Of The Mazi Umntanakho Digital Tool In South African Settings: A Qualitative Evaluation, Catherine E. Draper, Caylee J. Cook, Elizabeth A. Ankrah, Jesus A. Beltran, Franceli L. Cibrian, Kimberley D. Lakes, Hanna Mofid, Lucretia Williams, Gillian R. Hayes

Engineering Faculty Articles and Research

To address the need for interventions targeting social emotional development and mental health of young children in South Africa, the Mazi Umntanakho (‘know your child’) digital tool was co-designed, and piloted with caregivers and 3–5-year-old children involved in home visiting programmes promoting early childhood development. The aim of this study was to qualitatively evaluate the feasibility and acceptability of this tool in four urban and four rural low-income communities, from the perspective of home visitors and caregivers. Focus groups were conducted with home visitors (n = 117) and caregivers (n = 72). Issues relating to the feasibility of …

Congenital Rickets, Melissa Intriago

Mako: NSU Undergraduate Student Journal

No abstract provided.

One Heart, One Vessel: Unraveling The Mystery Of Truncus Arteriosus, Claudette C. Artiles

Mako: NSU Undergraduate Student Journal

No abstract provided.

What’S New In Esophageal Atresia Treatment?, Alexandra N. Jimenez Gonzalez

Mako: NSU Undergraduate Student Journal

No abstract provided.

Artificial Intelligence For The Detection Of Acute Myeloid Leukemia From Microscopic Blood Images; A Systematic Review And Meta-Analysis, Feras Al-Obeidat, Wael Hafez, Asrar Rashid, Mahir Khalil Jallo, Munier Gador, Ivan Cherrez-Ojeda, Daniel (Centro De Investigación De Salud Pública Y Epidemiología Clínica Simancas-Racines, , Universidad Ute, Quito, Ecuador , Universidad Ute, Quito, Ecuador

All Works

Leukemia is the 11th most prevalent type of cancer worldwide, with acute myeloid leukemia (AML) being the most frequent malignant blood malignancy in adults. Microscopic blood tests are the most common methods for identifying leukemia subtypes. An automated optical image-processing system using artificial intelligence (AI) has recently been applied to facilitate clinical decision-making. To evaluate the performance of all AI-based approaches for the detection and diagnosis of acute myeloid leukemia (AML). Medical databases including PubMed, Web of Science, and Scopus were searched until December 2023. We used the “metafor” and “metagen” libraries in R to analyze the different models used …

Racial Disparities Of Type 2 Diabetes Through Exercise: The Multi-Ethnic Study Of Atherosclerosis, Tong Xia, Roch A. Nianogo, Qingzhao Yu, Tamara Horwich, Preethi Srikanthan, Kosuke Inoue, Matthew Allison, Zuo-Feng Zhang, Karol E. Watson, Liwei Chen

School of Public Health Faculty Publications

Introduction: Persistent racial and ethnic disparities exist for Type 2 diabetes in the U.S. Racial and ethnic minorities have a higher risk of Type 2 diabetes, and studies suggest that they engage in less exercise than White population. This study examined whether and to what degree racial differences in Type 2 diabetes were explained by exercise. Methods: Adults aged 45–84 years without Type 2 diabetes at baseline (2000–2002) were included from the Multi-Ethnic Study of Atherosclerosis cohort and followed through 2020. Associations between race and Type 2 diabetes were examined using multivariable Cox proportional hazard regression. The effects of exercise …

Associations Between Social Determinants Of Health And Mental Health Disorders Among U.S. Population: A Cross-Sectional Study, S. Tanarsuwongkul

Faculty Publications

Aims

The impact of social determinants of health (SDOH) on mental health is increasingly realized. A comprehensive study examining the associations of SDOH with mental health disorders has yet to be accomplished. This study evaluated the associations between five domains of SDOH and the SDOH summary score and mental health disorders in the United States.

Methods

We analyzed data from a diverse group of participants enrolled in the All of Us research programme, a research programme to gather data from one million people living in the United States, in a cross-sectional design. The primary exposure was SDOH based on Healthy …

01.13.2025 Ored Connect, Liz Williamson

ORED Newsletter

NIH Public Access Policy Update

Procurement Information for Award Spending online course announcement

National Sea Grant Law Center funding

Using Nanotechnology To Achieve Sustainability In Interior Residential Spaces, Neveen Youssef Azmy, Esraa Tarek Abu-El Azm, Ahmed Ahmed Rizk, Walaa Abou El-Haggag Mehanna

Journal of Engineering Research

Major scientific and technological developments characterize the present time. One notable achievement is the nano revolution, which has greatly influenced various areas of life Nanotechnology is characterized by using very small particles of materials, either alone or by processing them to create new materials with remarkable properties. Hence, nanotechnology offers promising economic solutions and products to achieve a reliable and sustainable environment. Architecture has great potential to benefit from this technology to achieve sustainability and improve indoor environment quality. Given the proliferation of residential buildings in urban areas, where people spend most of their time, it is necessary to integrate …

Evaluating Lidar Technology In Iphone Mobiles For 2d Mapping Applications, Nasr Mohammady Saba, Salem Salama Saleh

Journal of Engineering Research

Abstract- LiDAR (Light Detection and Ranging) technology has revolutionized mapping applications, offering enhanced precision and accuracy in spatial data collection. The integration of LiDAR technology in the latest iPhone models, beginning with the iPhone 12 Pro, has introduced new capabilities for 2D data measurement and plan creation directly on the mobile device. The iPhone 12 Pro and 12 Pro Max models support LiDAR techniques within their mobile phone cameras, enhancing the performance of various applications such as Measurements and Photos. LiDAR operates by emitting pulsed light waves into the surrounding space, which bounce off nearby objects and return to the …

Experimental And Numerical Investigation For Optimum Design Of Hydraulic Steel Gates, Basma Hassan Mohamed Eng, Ahmed Mohamed Anwer Dr, Hanan Eltobgy Prof., Gamal Helmy El-Saeed Prof

Journal of Engineering Research

Conventionally, steel gates are widely used in hydraulic structures for their superior mechanical properties in sustaining hydrostatic pressure. Maintenance and operational costs should be considered while studying the feasibility of these gates. In the current research, three prototype steel gates with different configurations were prepared and examined experimentally. The three gates have the same surface dimensions of (width x height) equal to (1.0 x 1.25 m). The first steel gate represents a typical traditional gate made of skin plate and stiffened laterally using standard steel channels and will be kept for comparison. The second gate represents a standard thicker plate …

Performance And Emissions Characteristics Of Multi-Cylinder Direct Injection Diesel Engine Fuelled With Diesel/Biodiesel And Toluene Additives, Hagar Alm-Eldin Bastawissi, Medhat Elkelawy Prof. Dr. Eng., Mohammed Osama Elsamadony Dr. Eng., Moustafa Ghazaly Eng.

Journal of Engineering Research

This study explores the impact of using a diesel, biodiesel, and toluene additive fuel blend in a multi-cylinder direct injection diesel engine, focusing on both performance and emissions characteristics. Biodiesel, made from renewable sources like vegetable oils, is often added to diesel to reduce reliance on fossil fuels and improve combustion due to its higher oxygen content. In this work, a 45% biodiesel blend (B45) led to significant reductions in particulate matter (PM) emissions by up to 40% compared to conventional diesel. Additionally, carbon monoxide (CO) and hydrocarbon (HC) emissions decreased by up to 30% and 25%, respectively, due to …

Effect Of Dual-Fuelled Cng And Gasoline On Spark Ignition Engine Performance And Emissions Behaviors At Different Loads, Medhat Elkelawy Prof. Dr, Eng., M.M. Bassuoni Prof. Dr., Hagar Alm-Eldin Bastawissi, Saied I. Haiba Eng.

Journal of Engineering Research

Engine emissions are one of numerous factors that have detrimentally affected the environment, such as global warming, which is the result of growing exhaust gases, practically carbon dioxide (CO2). These emissions have substantially influenced researchers to develop strategic initiatives to minimize the carbon contents of fuels. The purpose of this research is to investigate the characteristics of internal combustion (SI) engines fueled by gasoline and compressed natural gas (CNG) blends. The experiments are performed using a HONDA 4-stroke, single-cylinder, and air-cooled SI engine. Five CNG concentrations are evaluated, the concentrations range from 0.5 to 2.5 L/min with a 0.5 L/min …

A Quantitative Analysis Of The Commercial-Additive Effects On Diesel Engine Combustion And Emissions Characteristics, Medhat Elkelawy Prof. Dr. Eng., Hagar Alm-Eldin Bastawissi Prof. Dr. Eng., E. A. El Shenawy Prof. Dr., Mahmoud Mohamed Soliman Mahmoud Mohamed Mahmoud Soliman

Journal of Engineering Research

Petroleum fuel prices fluctuate in response to global political and economic issues. Government regulations should be followed when it comes to engine emissions, as these dangerous pollutants have a negative impact on the environment. One such effect is global warming, which raises global temperatures. The purpose of this study is to develop the additives for use as a fuel mix with diesel fuel, which will be used to feed the diesel engine of a single cylinder, four strokes. The engine will be tested experimentally with varying loads at fixed speed of 1500 rpm, using blends of [(5% PRETSONE additive + …

Design And Implementation Of A Low-Cost Educa-Tional Robot For Engineering Curriculums, Diana Refaat Henry Jacob, Ashraf Mohamed Hafez, Mohamed Tarek Elawa

Journal of Engineering Research

The role of educational robots is becoming increasingly important. Many commercial educational robots differ in their abilities and price. In general, the cost of these robots presents the main cause of their limited use in the teaching process, especially in countries with limited financial resources. This work attempts to solve this problem by designing and implementing an educational robot with a limited budget. The robot was initially intended to serve higher education students' needs, especially in engineering curriculums but can be extended to other application areas. This work presents robot hardware functional blocks, mechanical struc-ture design, and 3D printing implementation. …

A Greening The Diesel: Vegetable Oil Biodiesel Blends For Cleaner Emissions And Improved Direct Injection Diesel Engine Performance, Medhat Elkelawy Prof. Dr, Eng., Hagar Alm-Eldin Bastawissi, E. A. El Shenawy Prof. Dr., Mustafa Mohamed Ouda

Journal of Engineering Research

In this study, we conducted comprehensive experiments to assess and compare the performance of pure diesel fuel against biodiesel produced from corn oil in various blend ratios (15/85, 30/70, 45/55, and 60/40) in a conventional four-stroke, direct-injection diesel engine, fuel is injected directly into the combustion chamber at the end of the compression stroke, allowing for efficient combustion and power generation over four distinct phases: intake, compression, power, and exhaust. Each fuel blend was tested at an engine speed of 16,000 rpm across different load conditions (low, medium, and high). Key performance metrics, including volumetric fuel consumption, exhaust smoke, and …