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Full-Text Articles in Horticulture

Pemanfaatan Kandungan Metabolit Sekunder Pada Tanaman Kunyit Dalam Mendukung Peningkatan Pendapatan Masyarakat, Dedi Kusbiantoro, Yayuk Purwaningrum Apr 2018

Pemanfaatan Kandungan Metabolit Sekunder Pada Tanaman Kunyit Dalam Mendukung Peningkatan Pendapatan Masyarakat, Dedi Kusbiantoro, Yayuk Purwaningrum

Jurnal Kultivasi

Curcumin is an active component that is widely contained in turmeric. In addition to protecting the liver from damage, it also works as a powerful antioxidant (capturing free radicals harmful to body cells), able toprevent the doubling of cancer cells, can reduce cholesterol and works as anti-inflammation. Recent research proves that Curcumin can also prevent colon cancer. This curcumin has been widely studied by experts both domestic and foreign as a hepatoprotector (protector of the liver from damage) and accelerate the regeneration of liver cells. The modern medic still entrusted liver therapy using Curcumin, as it is safer than using …


Nebline, April 2018 Apr 2018

Nebline, April 2018

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: Can You Pass This Food Safety Quiz?

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events

Special Pullout Section: Weed Awareness


Effect Of Cultivar And Type On Pepper Yield And Weight, Elizabeth 'Egan' Blessinger Apr 2018

Effect Of Cultivar And Type On Pepper Yield And Weight, Elizabeth 'Egan' Blessinger

Masters Theses & Specialist Projects

Peppers (Capsicum) are a valuable commodity throughout the world. They provide food, coloring additives, vitamins, and ornamental aesthetics. Peppers can be grown in many different areas of the world and their success is based on variety selection. Breeding cultivars for superior performance is critical to success. Recent consumer desire for less chemical use throughout the growing process has resulted in new cultivar developments..

The objective of this research was to investigate how cultivar and type affect the yield and weight of field grown peppers. This study provides valuable information for growers in determining which cultivars are suitable for production in …


Responses Of Marigold Cultivars To Saline Water Irrigation, Youping Sun, Genhua Niu, Christina Perez, H. Brent Pemberton, James Altland Apr 2018

Responses Of Marigold Cultivars To Saline Water Irrigation, Youping Sun, Genhua Niu, Christina Perez, H. Brent Pemberton, James Altland

Plants, Soils, and Climate Faculty Publications

Marigolds (Tagetes sp.) are ornamental plants with fine-textured, dark green foliage, and yellow, orange, or bicolored flowers. The relative salt tolerance of eight marigolds [‘Discovery Orange’, ‘Discovery Yellow’, ‘Taishan Gold’, ‘Taishan Orange’, and ‘Taishan Yellow’ African marigold (Tagetes erecta); ‘Hot Pak Gold’, ‘Hot Pak Orange’, and ‘Hot Pak Yellow’ French marigold (Tagetes patula)] was evaluated in a greenhouse experiment. Plants were irrigated weekly with nutrient solution at an electrical conductivity (EC) of 1.2 dS·m−1 (control) or saline solutions at an EC of 3.0 or 6.0 dS·m−1 (EC 3 or EC 6). Marigold plants …


Vegetation And Soil Responses To Concrete Grinding Residue Application On Highway Roadsides Of Eastern Nebraska, Ana Wingeyer, Martha Mamo, Walter H. Schacht, Dennis L. Mccallister, Pamela Sutton Apr 2018

Vegetation And Soil Responses To Concrete Grinding Residue Application On Highway Roadsides Of Eastern Nebraska, Ana Wingeyer, Martha Mamo, Walter H. Schacht, Dennis L. Mccallister, Pamela Sutton

Department of Agronomy and Horticulture: Faculty Publications

As a precautionary principle, the National Pollutant Discharge Elimination System (NPDES) permit establishes that the primary pollutant in concrete grinding residue (CGR) is its alkalinity and restricts CGR roadside discharge to 11 Mg ha−1 or the agronomic liming rate, whichever is lower. We evaluated the effect of CGR application on roadside soil chemical properties, existing vegetation, and rainfall runoff. Five CGR rates (0, 11, 22, 45, and 90 dry Mg ha−1) were tested on roadsides slopes at two different locations in eastern Nebraska. Vegetation, soil, and runoff characteristics were evaluated before CGR application and 30 d and …


A Systems Modeling Approach To Forecast Corn Economic Optimum Nitrogen Rate, Laila A. Puntel, John E. Sawyer, Daniel W. Barker, Peter J. Thorburn, Michael J. Castellano, Kenneth J. Moore, Andy Vanloocke, Emily A. Heaton, Sotirios V. Archontoulis Apr 2018

A Systems Modeling Approach To Forecast Corn Economic Optimum Nitrogen Rate, Laila A. Puntel, John E. Sawyer, Daniel W. Barker, Peter J. Thorburn, Michael J. Castellano, Kenneth J. Moore, Andy Vanloocke, Emily A. Heaton, Sotirios V. Archontoulis

Department of Agronomy and Horticulture: Faculty Publications

Historically crop models have been used to evaluate crop yield responses to nitrogen (N) rates after harvest when it is too late for the farmers to make in-season adjustments. We hypothesize that the use of a crop model as an in-season forecast tool will improve current N decision-making. To explore this, we used the Agricultural Production Systems sIMulator (APSIM) calibrated with long-term experimental data for central Iowa, USA (16-years in continuous corn and 15-years in soybean-corn rotation) combined with actual weather data up to a specific crop stage and historical weather data thereafter. The objectives were to: (1) evaluate the …


Impacts Of Cover Crop And Residue Removal On Soil Hydraulic And Thermal Properties, Michael T. Sindelar Apr 2018

Impacts Of Cover Crop And Residue Removal On Soil Hydraulic And Thermal Properties, Michael T. Sindelar

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Large-scale crop residue removal for livestock or biofuel production may negatively affect soil and water resources. A combination of management practices could be the key to manage such resources under increasingly variable climate. For instance, use of cover crops (CCs) could offset the negative impacts that corn (Zea mays L.) residue removal may have on soil water and energy balance. We studied: 1) the effect of corn residue removal (56%) with and without winter rye (Secale cereale L.) CC on soil hydraulic and thermal properties including water infiltration, water retention, pores-size distribution, thermal conductivity, specific heat capacity, and …


Determination Of The Ideal Plant Density Of Tomato Solanum Lycopersicum Under An Aquaponic Production System With Tilapia Oreochromis Aureus Under Uae Conditions, Mohamed Ahmed Al Dhanhani Apr 2018

Determination Of The Ideal Plant Density Of Tomato Solanum Lycopersicum Under An Aquaponic Production System With Tilapia Oreochromis Aureus Under Uae Conditions, Mohamed Ahmed Al Dhanhani

Theses

Aquaponics is an agricultural system that saves water and fertilization and offers a way of growing plants without soil pest infestation or pesticide residues. This system ensures the production of hazardous chemical free food for humans. This system also ensures sustainability by creating a natural relationship between fish and plants and makes gardening more productive and economical.

Aquaponics system is a dynamic ecosystem that can be integrated to achieve food security through the production of fish and vegetables without the intervention of fertilizers.

The focus of this study is optimizing planting density of tomato in an aquaponics system; with assess …


Genome-Wide Analyses Of The Nac Transcription Factor Gene Family In Pepper (Capsicum Annuum L.): Chromosome Location, Phylogeny, Structure, Expression Patterns, Cis-Elements In The Promoter, And Interaction Network, Weiping Diao, John C. Snyder, Shubin Wang, Jinbing Liu, Baogui Pan, Guangjun Guo, Wei Ge, Mohammad Hasan Salman Ali Dawood Mar 2018

Genome-Wide Analyses Of The Nac Transcription Factor Gene Family In Pepper (Capsicum Annuum L.): Chromosome Location, Phylogeny, Structure, Expression Patterns, Cis-Elements In The Promoter, And Interaction Network, Weiping Diao, John C. Snyder, Shubin Wang, Jinbing Liu, Baogui Pan, Guangjun Guo, Wei Ge, Mohammad Hasan Salman Ali Dawood

Horticulture Faculty Publications

The NAM, ATAF1/2, and CUC2 (NAC) transcription factors form a large plant-specific gene family, which is involved in the regulation of tissue development in response to biotic and abiotic stress. To date, there have been no comprehensive studies investigating chromosomal location, gene structure, gene phylogeny, conserved motifs, or gene expression of NAC in pepper (Capsicum annuum L.). The recent release of the complete genome sequence of pepper allowed us to perform a genome-wide investigation of Capsicum annuum L. NAC (CaNAC) proteins. In the present study, a comprehensive analysis of the CaNAC gene family in pepper was performed, …


Kentucky Women In Agriculture (Mss 611), Manuscripts & Folklife Archives Mar 2018

Kentucky Women In Agriculture (Mss 611), Manuscripts & Folklife Archives

Folklife Archives Finding Aids

Finding aid only for Manuscripts Project 611. Minutes, financial records, conference handouts, and newsletters related to Kentucky Women in Agriculture, an awareness and support group for women farmers in the Commonwealth. Also includes interviews with members and digital images of members.


Effects Of Foliar Applied Titanium ( Ti ) On Quality And Nutrient Uptake Of Creeping Bentgrass ( Agrostis Stolonifera ) On Professional Golf Course Greens, Caleb Wepprecht Mar 2018

Effects Of Foliar Applied Titanium ( Ti ) On Quality And Nutrient Uptake Of Creeping Bentgrass ( Agrostis Stolonifera ) On Professional Golf Course Greens, Caleb Wepprecht

Theses and Dissertations

Golf course putting greens typically consist of creeping bentgrass on sandy soils. Creeping bentgrass is mowed at extremely short heights, limiting root growth and making it vulnerable to different pests. Sandy profiles make it difficult for creeping bentgrass to take up nutrients and water. Tytanit combines sulfur, magnesium, and titanium-ascorbate as a biostimulant to increase chlorophyll content within the plant, increase yields, and assist in fighting biotic and abiotic diseases such as diseases and drought. Previous studies have shown benefits in plant growth, but results have been inconsistent. No previously reported studies have been performed on turfgrass using Tytanit. Therefore, …


Converting Agricultural Lesson Plans To Be Common Core Compliant For Grades 3-5, Hattie Kaymarie Jameson, Brittany Rose Withnell Mar 2018

Converting Agricultural Lesson Plans To Be Common Core Compliant For Grades 3-5, Hattie Kaymarie Jameson, Brittany Rose Withnell

Agricultural Education and Communication

There are few Common Core approved lesson plans for teachers to incorporate into traditional science programs in California. The Farm Bureau’s Ag in the Classroom (AITC) program provides K-12 educators lesson plans with an agricultural focus. Only 13 out of 45 of the lesson plans that the California AITC website offers are Common Core approved (Learn About Ag, 2017).

Agricultural literacy is valuable to consumers, can lead to careers in agriculture, and can create a greater understanding of the world and of science for students. The agricultural lessons give students a real life relationship with what they are learning and …


Nebline, March 2018 Mar 2018

Nebline, March 2018

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: Early Spring Care for Fruit Trees

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events


Review Of Genome-Wide Association Studies: From Polymorphism To Personalized Medicine, Jinliang Yang Mar 2018

Review Of Genome-Wide Association Studies: From Polymorphism To Personalized Medicine, Jinliang Yang

Department of Agronomy and Horticulture: Faculty Publications

Genome-wide association studies (GWAS) has become a powerful tool in the area of quantitative genetics to map the relationship between trait and genomic variations. This volume provides a great resource for beginners to learn about the recent advances in GWAS and for domain experts to identify the gaps in the area. The first part of the volume lays out the statistical background of GWAS. I really liked the article by Yang et al., Introduction to Statistical Methods in Genome-Wide Association Studies. In this chapter, the authors talked about the missing heritability issue and introduced ways to calculate heritability using the …


Arkansas Cotton Variety Test 2017, Fred Bourland, W. Barnett, C. Kennedy, L. Martin, A. Rouse, B. Robertson Mar 2018

Arkansas Cotton Variety Test 2017, Fred Bourland, W. Barnett, C. Kennedy, L. Martin, A. Rouse, B. Robertson

Arkansas Agricultural Experiment Station Research Series

The primary goal of the Arkansas Cotton Variety Test is to provide unbiased data regarding the agronomic performance of cotton varieties and advanced breeding lines in the major cotton-growing areas of Arkansas.


An Epigenetic Breeding System In Soybean For Increased Yield And Stability, Sunil K. Kenchanmane Raju, Mon-Ray Shao, Robersy Sanchez, Ying-Zhi Xu, Ajay Sandhu, George L. Graef, Sally A. Mackenzie Feb 2018

An Epigenetic Breeding System In Soybean For Increased Yield And Stability, Sunil K. Kenchanmane Raju, Mon-Ray Shao, Robersy Sanchez, Ying-Zhi Xu, Ajay Sandhu, George L. Graef, Sally A. Mackenzie

Department of Agronomy and Horticulture: Faculty Publications

Epigenetic variation has been associated with a wide range of adaptive phenotypes in plants, but there exist few direct means for exploiting this variation. RNAi suppression of the plant-specific gene, MutS HOMOLOG1 (MSH1), in multiple plant species produces a range of developmental changes accompanied by modulation of defence, phytohormone and abiotic stress response pathways along with methylome repatterning. This msh1-conditioned developmental reprogramming is retained independent of transgene segregation, giving rise to transgene-null ‘memory’ effects. An isogenic memory line crossed to wild type produces progeny families displaying increased variation in adaptive traits that respond to selection. This study …


Inheritance Of Mesotrione Resistance In An Amaranthus Tuberculatus (Var. Rudis) Population From Nebraska, Usa, Maxwel C. Oliveira, Todd A. Gaines, Amit J. Jhala, Stevan Z. Knezevic Feb 2018

Inheritance Of Mesotrione Resistance In An Amaranthus Tuberculatus (Var. Rudis) Population From Nebraska, Usa, Maxwel C. Oliveira, Todd A. Gaines, Amit J. Jhala, Stevan Z. Knezevic

Department of Agronomy and Horticulture: Faculty Publications

A population of Amaranthus tuberculatus (var. rudis) evolved resistance to 4- hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicides (mesotrione, tembotrione, and topramezone) in Nebraska. The level of resistance was the highest to mesotrione, and the mechanism of resistance in this population is metabolism-based likely via cytochrome P450 enzymes. The increasing number of weeds resistant to herbicides warrants studies on the ecology and evolutionary factors contributing for resistance evolution, including inheritance of resistance traits. In this study, we investigated the genetic control of mesotrione resistance in an A. tuberculatus population from Nebraska, USA. Results showed that reciprocal crosses in the F1 families exhibited …


Nebline, February 2018 Feb 2018

Nebline, February 2018

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: The Expanded Food and Nutrition Education Program Teaches Limited-Resource Families Through Peer Education

Food & Health

Farm & Acreage

Pests & Wildlife

Horticulture

Early Childhood

4-H & Youth

and other extension news and events


Genome-Wide Analysis Of Grain Yield Stability And Environmental Interactions In A Multiparental Soybean Population, Alencar Xavier, Diego Jarquin, Reka Howard, Vishnu Ramasubramanian, James E. Specht, George L. Graef, William D. Beavis, Brian W. Diers, Qijian Song, Perry B. Cregan, Randall L. Nelson, Rouf Mian, J. Grover Shannon, Leah K. Mchale, Dechun Wang, William Schapaugh, Aaron J. Lorenz, Shizhong Xu, William M. Muir, Katy M. Rainey Feb 2018

Genome-Wide Analysis Of Grain Yield Stability And Environmental Interactions In A Multiparental Soybean Population, Alencar Xavier, Diego Jarquin, Reka Howard, Vishnu Ramasubramanian, James E. Specht, George L. Graef, William D. Beavis, Brian W. Diers, Qijian Song, Perry B. Cregan, Randall L. Nelson, Rouf Mian, J. Grover Shannon, Leah K. Mchale, Dechun Wang, William Schapaugh, Aaron J. Lorenz, Shizhong Xu, William M. Muir, Katy M. Rainey

Department of Agronomy and Horticulture: Faculty Publications

Genetic improvement toward optimized and stable agronomic performance of soybean genotypes is desirable for food security. Understanding how genotypes perform in different environmental conditions helps breeders develop sustainable cultivars adapted to target regions. Complex traits of importance are known to be controlled by a large number of genomic regions with small effects whose magnitude and direction are modulated by environmental factors. Knowledge of the constraints and undesirable effects resulting from genotype by environmental interactions is a key objective in improving selection procedures in soybean breeding programs. In this study, the genetic basis of soybean grain yield responsiveness to environmental factors …


Cover Crops And Fertilization Alter Nitrogen Loss In Organic And Conventional Conservation Agriculture Systems, Rebecca E. Shelton, Krista L. Jacobsen, Rebecca L. Mcculley Jan 2018

Cover Crops And Fertilization Alter Nitrogen Loss In Organic And Conventional Conservation Agriculture Systems, Rebecca E. Shelton, Krista L. Jacobsen, Rebecca L. Mcculley

Horticulture Faculty Publications

Agroecosystem nitrogen (N) loss produces greenhouse gases, induces eutrophication, and is costly for farmers; therefore, conservation agricultural management practices aimed at reducing N loss are increasingly adopted. However, the ecosystem consequences of these practices have not been well-studied. We quantified N loss via leaching, NH3 volatilization, N2O emissions, and N retention in plant and soil pools of corn conservation agroecosystems in Kentucky, USA. Three systems were evaluated: (1) an unfertilized, organic system with cover crops hairy vetch (Vicia villosa), winter wheat (Triticum aestivum), or a mix of the two (bi-culture); (2) an organic …


Overlapping Residual Herbicides For Control Of Photosystem (Ps) Ii- And 4-Hydroxyphenylpyruvate Dioxygenase (Hppd)-Inhibitor-Resistant Palmer Amaranth (Amaranthus Palmeri S. Watson) In Glyphosate-Resistant Maize, Parminder S. Chahal, Zahoor Ahmad Ganie, Amit J. Jhala Jan 2018

Overlapping Residual Herbicides For Control Of Photosystem (Ps) Ii- And 4-Hydroxyphenylpyruvate Dioxygenase (Hppd)-Inhibitor-Resistant Palmer Amaranth (Amaranthus Palmeri S. Watson) In Glyphosate-Resistant Maize, Parminder S. Chahal, Zahoor Ahmad Ganie, Amit J. Jhala

Department of Agronomy and Horticulture: Faculty Publications

A Palmer amaranth (Amaranthus palmeri S. Watson) biotype has evolved resistance to photosystem (PS) II- (atrazine) and 4-hydroxyphenylpyruvate dioxygenase (HPPD)-inhibiting herbicides (mesotrione, tembotrione, and topramezone) in maize seed production field in Nebraska, USA. The objectives of this study were to determine the effect of soil residual pre-emergence (PRE) herbicides followed by (fb) tank-mixture of residual and foliar active post-emergence (POST) herbicides on PS-II- and HPPD-inhibitor-resistant Palmer amaranth control, maize yield, and net economic returns. Field experiments were conducted in a grower’s field infested with PS II- and HPPD-inhibitor-resistant Palmer amaranth near Shickley in Fillmore County, Nebraska, USA in 2015 …


Finding Aid To The Collection Of Victoria Sackville-West Materials., Victoria Sackville-West, Colby College Special Collections Jan 2018

Finding Aid To The Collection Of Victoria Sackville-West Materials., Victoria Sackville-West, Colby College Special Collections

Finding Aids

The collection contains 27 letters and 4 greeting cards of personal correspondence written between 1947-1961, from V. Sackville-West at her home at Sissinghurst Castle in Kent, U.K., to Grace Mountcastle Martin in Stillwater, Oklahoma. Many of the letters convey the author's thanks for shipments of sugar and soap during times of rationing in the U.K.

V. [Victoria or "Vita"] Sackville-West, English poet, novelist, socialite and suffragette, was born in 1892 at her family's estate at Knole in Kent. Privately educated, she began writing poetry at age 11, and had produced 8 novels and 5 plays by the time of her …


Finding Aid To The Collection Of Celia Thaxter Materials, Celia Thaxter, Colby College Special Collections Jan 2018

Finding Aid To The Collection Of Celia Thaxter Materials, Celia Thaxter, Colby College Special Collections

Finding Aids

Celia Laighton Thaxter, 1835-1894, was an American poet and prose writer. Born Celia Laighton in Portsmouth, N.H., she spent her childhood on White Island Lighthouse, part of Isles of Shoals, and Appledore Island. At 16 she married Levi Thaxter and had three sons, Karl, John, and Roland. The family spent winters on the mainland in Massachusetts, where Celia felt imprisoned by domestic duties in a city house. Her first poem, "Land-locked," was published in 1860 and was an immediate success. Soon she became widely published, with poems appearing in Harper's, Scribner's, and the Atlantic. With the means to spend more …


Bacterial Spot And Blight Diseases Of Ornamental Plants Caused By Different Xanthomonas Species In Turkey, Mustafa Mirik, Yesim Aysan, Fulya Baysal-Gurel Jan 2018

Bacterial Spot And Blight Diseases Of Ornamental Plants Caused By Different Xanthomonas Species In Turkey, Mustafa Mirik, Yesim Aysan, Fulya Baysal-Gurel

Agricultural and Environmental Sciences Faculty Research

Putative strains belonging to Xanthomonas spp. causing leaf spot and blight diseases on geranium (Pelargonium peltatum and P. hortorum), begonia (Begonia × tuberhybrida), anthurium (Anthurium andraeanum), Chinese hibiscus (Hibiscus rosa-sinensis), and English ivy (Hedera helix) growing in Turkey were isolated. All bacterial strains were classified as Gram-negative, oxidase negative, catalase, levan and starch hydrolysis positive, with hypersensitive reaction positive on tobacco and pathogenic to host plants. Identification of these strains was further confirmed by serological method using ELISA kits, conventional PCR, carbon utilisation, and FAME. Results of the identification showed that 28, 24, 10, 2, and 1 strains were identified …


Carnarvon Plantation Industry Production Statistics 2017, Department Of Primary Industries And Regional Development, Western Australia Jan 2018

Carnarvon Plantation Industry Production Statistics 2017, Department Of Primary Industries And Regional Development, Western Australia

Horticulture research reports

The Carnarvon Horticulture District is located along the fertile delta of the Gascoyne River. This irrigated area is one of the most productive in Western Australia for horticulture, producing a wide variety of fruit and vegetable crops including but not limited to bananas, table grapes, mangoes, melons, tomatoes, capsicums & green beans. The majority of Carnarvon's vegetable production occurs during the winter months where sunlight & temperature in Carnarvon is favourable for vegetable production.

This report shows detailed statistics for the horticultural produce of Carnarvon in 2017.


Determination Of Selected Aromas In Marquette And Frontenac Wine Using Headspace-Spme Coupled With Gc-Ms And Simultaneous Olfactometry, Somchai Rice, Nanticha Lutt, Jacek A. Koziel, Murlidhar Dharmadhikari, Anne Fennell Dr Jan 2018

Determination Of Selected Aromas In Marquette And Frontenac Wine Using Headspace-Spme Coupled With Gc-Ms And Simultaneous Olfactometry, Somchai Rice, Nanticha Lutt, Jacek A. Koziel, Murlidhar Dharmadhikari, Anne Fennell Dr

Agronomy, Horticulture and Plant Science Faculty Publications

Understanding the aroma profile of wines made from cold climate grapes is needed to help winemakers produce quality aromatic wines. The current study aimed to add to the very limited knowledge of aroma-imparting compounds in wines made from the lesser-known Frontenac and Marquette cultivars. Headspace solid-phase microextraction (SPME) and gas chromatography-mass spectrometry (GC-MS) with simultaneous olfactometry was used to identify and quantify selected, aroma-imparting volatile organic compounds (VOC) in wines made from grapes harvested at two sugar levels (22° Brix and 24° Brix). Aroma-imparting compounds were determined by aroma dilution analysis (ADA). Odor activity values (OAV) were also used to …


Comparison Of Three Assembly Strategies For A Heterozygous Seedless Grapevine Genome Assembly, Sagar Patal, Zhixiu Lu, Xiaozhu Jin, Padmapriya Swaminathan, Erliang Zeng, Anne Y. Fennell Dr Jan 2018

Comparison Of Three Assembly Strategies For A Heterozygous Seedless Grapevine Genome Assembly, Sagar Patal, Zhixiu Lu, Xiaozhu Jin, Padmapriya Swaminathan, Erliang Zeng, Anne Y. Fennell Dr

Agronomy, Horticulture and Plant Science Faculty Publications

Background
De novo heterozygous assembly is an ongoing challenge requiring improved assembly approaches. In this study, three strategies were used to develop de novo Vitis vinifera ‘Sultanina’ genome assemblies for comparison with the inbred V. vinifera (PN40024 12X.v2) reference genome and a published Sultanina ALLPATHS-LG assembly (AP). The strategies were: 1) a default PLATANUS assembly (PLAT_d) for direct comparison with AP assembly, 2) an iterative merging strategy using METASSEMBLER to combine PLAT_d and AP assemblies (MERGE) and 3) PLATANUS parameter modifications plus GapCloser (PLAT*_GC).
Results
The three new assemblies were greater in size than the AP assembly. PLAT*_GC had the …


Ms Environmental Biology Capstone Project, Annamaria Marcel Jan 2018

Ms Environmental Biology Capstone Project, Annamaria Marcel

Regis University Student Publications (comprehensive collection)

Due to the worldwide decline of biodiversity, protected nature reserves are necessary for species facing extinction. Many frog species have been experiencing rapid population decline and extinction due to the threat of the fungus Batrachochytrium dendrobatidis (Bd), which inflicts the highly transmittable and deadly disease chytridiomycosis. Chytridiomycosis causes increased skin tissue growth which disrupts respiration and the maintenance of water balance, which can ultimately lead to death. Certain ecological and geographical characteristics have been studied in order to assess their influence on Bd’s prevalence. Specifically, it is hypothesized that high elevations, lotic habitats, and low species richness have a positive …


Nebline, January 2018 Jan 2018

Nebline, January 2018

NEBLINE Newsletter Archive from Nebraska Extension in Lancaster County

Feature: Extension 2017 Highlights

Food & Health

Farm & Acreage

Horticulture

Pests & Wildlife

4-H & Youth

Early Childhood

and other extension news and events


Transcriptional Reprogramming Of Legume Genomes: Perspective And Challenges Associated With Single-Cell And Single Cell-Type Approaches During Nodule Development, Marc Libault Jan 2018

Transcriptional Reprogramming Of Legume Genomes: Perspective And Challenges Associated With Single-Cell And Single Cell-Type Approaches During Nodule Development, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

Transcriptomic approaches revealed thousands of genes differentially or specifically expressed during nodulation, a biological process resulting from the symbiosis between leguminous plant roots and rhizobia, atmospheric nitrogen-fixing symbiotic bacteria. Ultimately, nodulation will lead to the development of a new root organ, the nodule. Through functional genomic studies, plant transcriptomes have been used by scientists to reveal plant genes potentially controlling nodulation. However, it is important to acknowledge that the physiology, transcriptomic programs, and biochemical properties of the plant cells involved in nodulation are continuously regulated. They also differ between the different cell-types composing the nodules. To generate a more accurate …