Botany Commons^™

Supplemental Data, Russell J. Ingram, Foster Levy, Cindy L. Barrett, James T. Donaldson

ETSU Faculty Works

No abstract provided.

Floristic Inventory Of Woollen’S Gardens Nature Preserve, Indianapolis, Marion County, Indiana, Usa, With Quantitative Vegetation Sampling Of Permanent Plots In 2003 And 2016, Rebecca W. Dolan, Marcia E. Moore

Scholarship and Professional Work - LAS

Urban forest fragments face challenges to habitat quality due to small size, isolation from larger natural areas, and close association with anthropogenic disturbance. Monitoring changes in vegetation can inform management practices targeted at preserving biodiversity in the face of these threats. Woollen’s Gardens is a high-quality mesic upland forest preserve in the city of Indianapolis, Indiana, USA, with a beechmaple older-growth forest and a significant display of showy spring wildflowers. The entire preserve was inventoried and quantitative vegetation analysis along seven 100 m transects was conducted in 2003 and again in 2016 to track changes. Data from both years document …

Featured Herbarium: But—The Friesner Herbarium Of Butler University, Rebecca W. Dolan

Scholarship and Professional Work - LAS

Feature written by Rebecca Dolan on the BUT—The Friesner Herbarium of Butler University in the Vasculum.

Root Kerplunk, Tallgrass Prairie Center

Open Educational Resources

With the help of jumps ropes and nerf balls, students explore two ecosystem services provided by prairie roots: nutrient reduction and invasive weed control.

Routes For Infiltration, Tallgrass Prairie Center

Open Educational Resources

Students become a carbon atom and experience the movements of carbon through the environment, including its time sequestered in prairie roots.

Root Community, Tallgrass Prairie Center

Open Educational Resources

Pairs of students play a battleship-style game to show how roots explore the soil to obtain resources.

Incredible Carbon Journey, Tallgrass Prairie Center

Open Educational Resources

Students become a carbon atom and experience the movements of carbon through the environment, including its time sequestered in prairie roots.

Muddy Waters, Tallgrass Prairie Center

Open Educational Resources

With the help of jumps ropes and nerf balls, students explore two ecosystem services provided by prairie roots: nutrient reduction and invasive weed control.

Roots - Why So Fine?, Tallgrass Prairie Center

Open Educational Resources

Using root models made of commonly available materials, students explore how the size of roots affects their ability to exchange materials with soil.

Prairie Roadshow, Tallgrass Prairie Center

Open Educational Resources

Students turn a school hallway into a prairie roadside, while learning about the important services provided by prairie roots.

School Of Roots, Tallgrass Prairie Center

Open Educational Resources

Students learn about ecosystem services provided by prairie roots by matching them to services provided by various components of a school.

Battleship Roots, Tallgrass Prairie Center

Open Educational Resources

Pairs of students play a battleship-style game to show how roots explore the soil to obtain resources.

The Vegetation And Flora Of Edwards Air Force Base, Western Mojave Desert, California, David Charlton, Philip W. Rundel

Aliso: A Journal of Systematic and Floristic Botany

Edwards Air Force Base extends over 121,000 ha in the Antelope Valley of the western Mojave Desert, with much of the area part of a closed endorheic basin that held the Pleistocene Lake Thompson. Notable topographic features are Rogers, Rosamond and Buckhorn dry lakes, while rounded domes and scattered hills are present to the north and east. Elevation gradients are limited, ranging from a low of 690 m to 1044 m near the eastern margin. Diverse communities of saltbush scrub dominate the lower plains, while creosote bush scrub and Joshua tree woodlands are present away from the old lake basin. …

The Role Of Tre6p And Snrk1 In Maize Early Kernel Development And Events Leading To Stress-Induced Kernel Abortion, Samuel W. Bledsoe, Clémence Henry, Cara A. Griffiths, Matthew J. Paul, Regina Feil, John E. Lunn, Mark Stitt, L. Mark Lagrimini

Department of Agronomy and Horticulture: Faculty Publications

Background: Drought stress during flowering is a major contributor to yield loss in maize. Genetic and biotechnological improvement in yield sustainability requires an understanding of the mechanisms underpinning yield loss. Sucrose starvation has been proposed as the cause for kernel abortion; however, potential targets for genetic improvement have not been identified. Field and greenhouse drought studies with maize are expensive and it can be difficult to reproduce results; therefore, an in vitro kernel culture method is presented as a proxy for drought stress occurring at the time of flowering in maize (3 days after pollination). This method is used to …

Changes In Soil Microbial Communities After 10 Years Of Winter Wheat Cultivation Versus Fallow In An Organic-Poor Soil In The Loess Plateau Of China, Hui Tian, Hui Wang, Xiaoli Hui, Zhaohui Wang, Rhae A. Drijber, Jinshan Liu

Department of Agronomy and Horticulture: Faculty Publications

Agricultural management methods, such as cultivation or fallowing, have led to significant changes in soil fertility and hence, crop yield. Such changes may have stemmed from changes in soil microbial communities and associated biogeochemical processes. This phenomenon is particularly true in organic-poor soil in the Loess Plateau of China. In this study, we examined three existing soil management regimes as part of a 10-year field experiment and evaluated their effects on fungal and bacterial community structures by performing high-throughput 454 pyrosequencing. These management regimes were (i) fertilized winter wheat (Triticum aestivum L.) (FW), (ii) continuous natural fallow with weeds …

Mapping And Characterization Of The Fefe Gene That Controls Iron Uptake In Melon (Cucumis Melo L.), Raghuprakash Kastoori Ramamurthy, Brian M. Waters

Department of Agronomy and Horticulture: Faculty Publications

Iron (Fe) deficiency in plants limits crop growth and productivity. Molecular mechanisms that plants use to sense and respond to Fe deficiency by coordinated expression of Feuptake genes are not fully understood. The C940-fe chlorotic melon (Cucumis melo) mutant known as fefe is unable to upregulate Fe-uptake genes, however, the FeFe gene had not been identified. In this study, we used two F₂ mapping populations to map and identify the FeFe gene as bHLH38, a homolog of subgroup Ib bHLH genes from Arabidopsis thaliana that are involved in transcriptional regulation of Feuptake genes in partnership with the …

Population Structure And Genetic Diversity Of Bromus Tectorum Within The Small Grain Production Region Of The Pacific Northwest, Nevin C. Lawrence, Amber L. Hauvermale, Amit Dhingra, Ian C. Burke

Department of Agronomy and Horticulture: Faculty Publications

Bromus tectorum L. is an invasive winter annual grass naturalized across the United States. Numerous studies have investigated B. tectorum population structure and genetics in the context of B. tectorum as an ecological invader of natural areas and rangeland. Despite the wealth of information regarding B. tectorum, previous studies have not focused on, or made comparisons to, B. tectorum as it persists in individual agroecosystems. The objectives of this study were to assess the genetic diversity and structure, the occurrence of generalist and specialist genotypes, and the influence of climate on distribution of B. tectorum sourced exclusively from within …

A Transcriptome‑Snp‑Derived Linkage Map Of Apios Americana (Potato Bean) Provides Insights About Genome Re‑Organization And Synteny Conservation In The Phaseoloid Legumes, Jugpreet Singh, Scott R. Kalberer, Vikas Belamkar, Teshale Assefa, Matthew N. Nelson, Andrew D. Farmer, William J. Blackmon, Steven B. Cannon

Department of Agronomy and Horticulture: Faculty Publications

Apios (Apios americana; “apios”), a tuberous perennial legume in the Phaseoleae tribe, was widely used as a food by Native Americans. Work in the last 40 years has led to several improved breeding lines. Aspects of the pollination biology (complex floral structure and tripping mechanism) have made controlled crosses difficult, and the previous reports indicated that the plant is likely primarily an outcrosser. We used a pseudo-testcross strategy to construct a genetic map specific to the maternal parent. The map was built using single-nucleotide polymorphism markers identified by comparing the expressed sequences of individuals in the mapping population …

The Trouble With Cover Crops: Farmers’ Experiences With Overcoming Barriers To Adoption, Gabrielle E. Roesch-Mcnally, Andrea D. Basche, J. G. Arbuckle, John C. Tyndall, Fernando E. Miguez, Troy Bowman, Rebecca Clay

Department of Agronomy and Horticulture: Faculty Publications

Cover crops are known to promote many aspects of soil and water quality, yet estimates find that in 2012 only 2.3% of the total agricultural lands in the Midwestern USA were using cover crops. Focus groups were conducted across the Corn Belt state of Iowa to better understand how farmers confront barriers to cover crop adoption in highly intensive agricultural production systems. Although much prior research has focused on analyzing factors that help predict cover crop use on farms, there is limited research on how farmers navigate and overcome field-level (e.g. proper planting of a cover crop) and structural barriers …

Genetic Diversity Of Danthonia Spicata (L.) Beauv. Based On Genomic Simple Sequence Repeat Markers, Chandra S. Thammina, Keenan Amundsen, Shaun B. Bushman, Matthew H. Kramer, Scott E. Warnke

Department of Agronomy and Horticulture: Faculty Publications

Danthonia spicata (L.) Beauv., commonly known as poverty oatgrass, is a perennial bunch-type grass native to North America. D. spicata is often found in low input turfgrass areas on the East Coast of the United States and has potential for development as a new native low input turfgrass species. Roche 454 sequenced randomly sheared genomic DNA reads of D. spicata were mined for SSR markers using the MIcroSAtellite identification tool. A total of 66,553 singlet sequences (approximately 37.5 Mbp) were examined, and 3454 SSR markers were identified. Trinucleotide motifs with greater than six repeats and possessing unique PCR priming sites …

Molecular And Phenotypic Characterization Of Transgenic Wheat And Sorghum Events Expressing The Barley Alanine Aminotransferase, Pamela A. Peña, Truyen Quach, Shirley Sato, Zhengxiang Ge, Natalya Nersesian, Ismail M. Dweikat, Madhavan Soundararajan, Tom Clemente

Department of Agronomy and Horticulture: Faculty Publications

Main conclusion — The expression of a barley alanine aminotransferase gene impacts agronomic outcomes in a C3 crop, wheat.

The use of nitrogen-based fertilizers has become one of the major agronomic inputs in crop production systems. Strategies to enhance nitrogen assimilation and flux in planta are being pursued through the introduction of novel genetic alleles. Here an Agrobacterium-mediated approach was employed to introduce the alanine aminotransferase from barley (Hordeum vulgare), HvAlaAT, into wheat (Triticum aestivum) and sorghum (Sorghum bicolor), regulated by either constitutive or root preferred promoter elements. Plants harboring the transgenic …

Metabolism Of 2,4-Dichlorophenoxyacetic Acid Contributes To Resistance In A Common Waterhemp (Amaranthus Tuberculatus) Population, Marcelo R. A. Figueiredo, Lacy J. Leibhart, Zachary J. Reicher, Patrick J. Tranel, Scott J. Nissen, Philip Westra, Mark L. Bernards, Greg R. Kruger, Todd A. Gaines, Mithila Jugulam

Department of Agronomy and Horticulture: Faculty Publications

BACKGROUND: Synthetic auxins such as 2,4-D have been widely used for selective control of broadleaf weeds since the mid-1940s. In 2009, an Amaranthus tuberculatus (common waterhemp) population with 10-fold resistance to 2,4-D was found in Nebraska, USA. The 2,4-D resistance mechanism was examined by conducting [¹⁴C] 2,4-D absorption, translocation and metabolism experiments.

RESULTS: No differences were found in 2,4-D absorption or translocation between the resistant and susceptible A. tuberculatus. Resistant plants metabolized [¹⁴C] 2,4-D more rapidly than did susceptible plants. The half-life of [¹⁴C] 2,4-D in susceptible plants was 105 h, compared to …

Multisite Evaluation Of Apex For Water Quality: Ii. Regional Parameterization, Nathan O. Nelson, Claire Baffaut, John A. Lory, G.M.M.M. Anomaa Senaviratne, Ammar B. Bhandari, Ranjith P. Udawatta, Daniel W. Sweeney, Matt J. Helmers, Mike W. Van Liew, Antonio P. Mallarino, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

Phosphorus (P) Index assessment requires independent estimates of long-term average annual P loss from fields, representing multiple climatic scenarios, management practices, and landscape positions. Because currently available measured data are insufficient to evaluate P Index performance, calibrated and validated process-based models have been proposed as tools to generate the required data. The objectives of this research were to develop a regional parameterization for the Agricultural Policy Environmental eXtender (APEX) model to estimate edgeof- field runoff, sediment, and P losses in restricted-layer soils of Missouri and Kansas and to assess the performance of this parameterization using monitoring data from multiple sites …

A Vascular Flora Of The Kiavah Wilderness, Scodie Mountains, Kern County, California, Erika M. Gardner

Aliso: A Journal of Systematic and Floristic Botany

Congress designated the Kiavah Wilderness in 1994 under the California Desert Protection Act. It is located in the Scodie Mountains in Kern County, ca. 24 km (15 mi) east of Lake Isabella and 24 km (15 mi) west of Ridgecrest, and encompasses a total of 137 mi² (354 km²) with elevations ranging from 1000 to 2200 m (3500–7294 ft). The Wilderness is ecologically important because it occurs in a transition zone between two floristic provinces, the Sierra Nevada of the California Floristic Province and the Mojave Desert of the Desert Province. It is of cultural significance because …

Plant Phenology And Water Relations In A Saline Pan-Dune Mosaic In The Western Mojave Desert, M. Rasoul Sharifi, William N. Brostoff, Philip W. Rundel

Aliso: A Journal of Systematic and Floristic Botany

An extensive mosaic of small clay pans and low stable dunes exists within Edwards Air Force Base in the western Mojave Desert of California. This pan-dune ecosystem, positioned between the large Rosamond and Rogers dry lakes on the old Pleistocene lakebed of Lake Thompson, provides an opportunity to study the seasonal patterns in growth and flowering phenology and water relations in a saltbush scrub community dominated by a mix of C₃ and C₄ species. C₃ shrubs initiated vegetative growth in February, with current shoot and leaf production largely ceasing in most species by mid-April. The deeply rooted …

Political Ecology Of Medicinal Plant Use In Rural Nepal: Globalization, Environmental Degradation, And Cultural Transformation, Emily Dovydaitis

Honors Undergraduate Theses

Prior to the advent of biomedicine, rural communities in Nepal relied on phytochemically active compounds in medicinal plants as their primary source of medicine; however, ethnobotanical practices have shifted over time due to economic, environmental, and sociocultural stimuli. Findings from 2016 fieldwork conducted in Dumrikharka, Nepal and Tutung, Nepal are compared to existing literature to describe the political ecology of medicinal plants in rural Nepal.

Anthropogenic climate change threatens individual plant species and ecosystem biodiversity. Globalized markets unabated by weak conservation programs place increasing demands on medicinal plants. As indigenous plants become overharvested and more difficult to access, Nepalis incorporate …

Araucaria In The Urban Landscape: A Novel Leaning Pattern And Evidence Of Cultivated Hybridization, Jason W. Johns

Master's Theses

Our understanding of the natural world is constantly evolving and strengthening as more observations are made and experiments are performed. For example, we understand that tree stems grow toward the light (positive phototropism; Darwin 1880, Loehle 1986, Christie et al. 2013) and against gravity (negative gravitropism; Knight 1806, Hashiguchi et al. 2013). We also know that plants respond to mechanical stimulus and perturbation (thigmotropism; Braam 2005). Genes and their resulting proteins have been described to uncover some of the mechanisms for these environmental responses, but relatively speaking, we have just scratched the surface (Wyatt et al. 2013). While the discovery …

Modeling The Spread Of Sudden Oak Death Across A Heterogeneous Landscape In Redwood National Park Using A Spatially-Explicit Epidemiological Model, Laura A. Morgan

Cal Poly Humboldt theses and projects

The pathogen Phytophthora ramorum, the causal agent of Sudden Oak Death (SOD), is responsible for the deaths of millions of oak (Quercus spp.) and tanoak (Notholithocarpus densiflorus) trees in California and Oregon (USA). A recent infection in Redwood National Park (RNP) in California (USA) provided an opportunity to adapt an existing SOD model to assess the efficacy of current and proposed management strategies. A common method of SOD treatment includes killing both infected and uninfected hosts in the area of infection, as well as the area surrounding the infection to create buffers to account for undetected …

¬Multilocus Phylogeny Of The Lichen Family Megasporaceae, Tim B. Wheeler

Graduate Student Theses, Dissertations, & Professional Papers

The lichen symbiosis is one of the oldest studied mutualisms; in fact, Frank and De Bary coined the term "symbiosis" while studying lichens (Frank, 1877; De Bary 1879). The widespread, stable association between the mycobiont and photobiont in lichens offers an ideal system for the study of co-evolution. The recent application of molecular data to lichens has begun to unveil the complexities involved in these associations (Upreti et al. 2015, Spribille et al. 2016). Lichenized fungi make up a huge fraction of fungal diversity (Nash 2008), yet very little is known of their genetic diversity. Fungal taxonomy is notoriously difficult …

Comparative Leaf Anatomy Of C3 And Cam Species In Oncidiinae (Maxillarieae, Orchidaceae), Samuel A. Eident

Masters Theses

The subtribe Oncidiinae is a diverse group of mostly epiphytic orchids within the tribe Maxillarieae, consisting of 55 genera and 1700 species. In this group, there have been many studies examining morphological and anatomical variation as well as metabolic pathways of carbon fixation, but most have not integrated morphological and anatomical variation with a physiological aspect of inquiry. The objective of my research was to establish a suite of anatomical characteristics that can be used to distinguish between C₃ and CAM species. Secondarily, I hoped to use that suite of characteristics in determining whether intermediate CAM species (those that …