Botany | Open Access Articles | Digital Commons Network™

Lonicera Maackii Leaf Feeding Tests: Survival, Growth, Loss Of Leaf Mass, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

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Lymnaea stagnalis, Hyalella Azteca, and Allocapnia spp.

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Lonicera Maackii Leaf Leachate Toxicity: Physicochemical Data, Eric B. Borth, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

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Lymnaea stagnalis and Hyalella azteca

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Optimising The Identification Of Causal Variants Across Varying Genetic Architectures In Crops, Chenyong Miao, Jinliang Yang, James C. Schnable

Department of Agronomy and Horticulture: Faculty Publications

Association studies use statistical links between genetic markers and the phenotype variation across many individuals to identify genes controlling variation in the target phenotype. However, this approach, particularly conducted on a genome-wide scale (GWAS), has limited power to identify the genes responsible for variation in traits controlled by complex genetic architectures. In this study, we employ real-world genotype datasets from four crop species with distinct minor allele frequency distributions, population structures and linkage disequilibrium patterns. We demonstrate that different GWAS statistical approaches provide favourable trade-offs between power and accuracy for traits controlled by different types of genetic architectures. FarmCPU provides …

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Transcriptional Reprogramming Of Legume Genomes: Perspective And Challenges Associated With Single-Cell And Single Cell-Type Approaches During Nodule Development, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

Transcriptomic approaches revealed thousands of genes differentially or specifically expressed during nodulation, a biological process resulting from the symbiosis between leguminous plant roots and rhizobia, atmospheric nitrogen-fixing symbiotic bacteria. Ultimately, nodulation will lead to the development of a new root organ, the nodule. Through functional genomic studies, plant transcriptomes have been used by scientists to reveal plant genes potentially controlling nodulation. However, it is important to acknowledge that the physiology, transcriptomic programs, and biochemical properties of the plant cells involved in nodulation are continuously regulated. They also differ between the different cell-types composing the nodules. To generate a more accurate …

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First Case Of Glufosinate-Resistant Rigid Ryegrass (Lolium Rigidum Gaud.) In Greece, Ilias S. Travlos, Nikolina Cheimona, Rafael De Prado, Amit J. Jhala, Demosthenis Chachalis, Eleni Tani

Department of Agronomy and Horticulture: Faculty Publications

Repeated applications of the same herbicide(s), which are characterized by the same mode of action, increase selection pressure, which in turn favours the evolution of herbicide-resistant weeds. Glufosinate is a broad-spectrum non-selective herbicide being used for weed control for many years around the world. Rigid ryegrass (Lolium rigidum Gaud.) is an economically important grass weed in Greece. Recent complaints by growers about control failure of rigid ryegrass with glufosinate require further investigation and have been the basis of this study. The objectives of this study were to confirm the existence of glufosinate-resistant L. rigidum in Greece and evaluate the …

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Empowerment And Tech Adoption: Introducing The Treadle Pump Triggers Farmers’ Innovation In Eastern Ethiopia, Shimelis Beyene, Teshome H. Regassa, Belaineh Legesse, Martha Mamo, Tsegaye Tadesse

Department of Agronomy and Horticulture: Faculty Publications

In 2013, thirty-eight treadle pumps (TPs) were installed as low-cost technology introduction for small-scale irrigation in eastern Ethiopia. This pilot project also trained six farmers on tube well excavation, as well as the installation and maintenance of pumps. In June 2015, researchers visited nine of the thirty-eight TP villages and found only two TPs functioning as originally installed. The rest were replaced with a new technology developed by the trained farmers. Farmers, empowered by training, gained more control in developing technology options tailored to local needs and conditions of their communities. Adopters of the new technology stated that the limited …

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Beyond The Plot: Technology Extrapolation Domains For Scaling Out Agronomic Science, Juan I. Rattalino Edreira, Kenneth G. Cassman, Zvi Hochman, Martin K. Van Ittersum, Lenny Van Bussel, Lieven Claessens, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Ensuring an adequate food supply in systems that protect environmental quality and conserve natural resources requires productive and resource-efficient cropping systems on existing farmland.Meeting this challenge will be difficult without a robust spatial framework that facilitates rapid evaluation and scaling-out of currently available and emerging technologies. Here we develop a global spatial framework to delineate ‘technology extrapolation domains’ based on key climate and soil factors that govern crop yields and yield stability in rainfed crop production. The proposed framework adequately represents the spatial pattern of crop yields and stability when evaluated over the data-rich US Corn Belt. It also facilitates …

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Is Conservation Agriculture A Potential Option For Cereal-Based Sustainable Farming System In The Eastern Indo-Gangetic Plains Of Nepal?, Dipendra Pokharel, Raj Kant Jha, Thakur Prasad Tiwari, Mahesh Kumar Gathala, Hari Krishna Shrestha, Dinesh Panday

Department of Agronomy and Horticulture: Faculty Publications

A decline in land and water productivity, increase in the cost of cultivation, and labor-intensive practices are affecting the cereal-based farming system in Nepal, particularly in the Indo-Gangetic Plains (IGP). Conservation agriculture (CA) practices have been found to be the climate-, energy-, and labor-smart and sustainable agricultural production technologies. Sustainable and Resilient Farming System Intensification (SRFSI) has been working since 2014 in response to the sustainability of the cereal-based (rice–wheat and rice–maize) farming in Sunsari and Dhanusha districts of Nepal. This study was conducted to assess the adoption and scaling up of CA in addition to input usage, production, net …

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Impact Of Drought On Chemical Composition And Sugar Yields From Dilute-Acid Pretreatment And Enzymatic Hydrolysis Of Miscanthus, A Tall Fescue Mixture, And Switchgrass, Amber Hoover, Rachel Emerson, Allison Ray, Daniel Stevens, Sabrina Morgan, Marnie Cortez, Robert Kallenbach, Matthew Sousek, Rodney Farris, Dayna Daubaras

Department of Agronomy and Horticulture: Faculty Publications

Environmental factors like drought impact the quality of biomass entering a bioconversion process. Drought often reduces the sugar content in lignocellulosic biomass, which could have economic impacts, particularly when compounded with losses in dry biomass yield; however, the effects on conversion efficiency are not completely understood. This study investigated how drought may impact biomass composition and sugar yields from dilute-acid pretreatment and enzymatic hydrolysis of Miscanthus, a tall fescue mixture, and switchgrass from Nebraska, Missouri, and Oklahoma, respectively, grown as part of Regional Feedstock Partnership field trials. Samples were grown and harvested in 2010 during non-drought conditions and in …

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Impaired Phloem Loading In Zmsweet13a,B,C Sucrose Transporter Triple Knock-Out Mutants In Zea Mays, Margaret Bezrutczyk, Thomas Hartwig, Marc Horschman, Si Nian Char, Jinliang Yang, Bing Yang, Wolf B. Frommer, Davide Sosso

Department of Agronomy and Horticulture: Faculty Publications

Crop yield is critical for human nutrition, yet the underlying machinery that ultimately determines yield potential is still not understood. Crop productivity under ideal conditions is determined by the efficiency with which plants intercept light, convert it into chemical energy, translocate photosynthates and convert these to storage products in harvestable organs (Zhu et al., 2010). In many crops, sucrose is the primary form for translocation inside the conduit (i.e. the phloem). A combination of SWEETmediated efflux from phloem parenchyma and subsequent secondary active sucrose import by SUT sucrose/H+ symporters is thought to create the driving force for pressure gradient-driven …

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Tetracycline And Sulfonamide Antibiotic Resistance Genes In Soils From Nebraska Organic Farming Operations, Marylynn Cadena, Lisa M. Durso, Daniel N. Miller, Heidi M. Waldrip, B. L. Castleberry, Rhae A. Drijber, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

There is widespread agreement that agricultural antibiotic resistance should be reduced, however, it is unclear from the available literature what an appropriate target for reduction would be. Organic farms provide a unique opportunity to disentangle questions of agricultural antibiotic drug use from questions of antibiotic resistance in the soil. In this study, soil was collected from 12 certified organic farms in Nebraska, evaluated for the presence of tetracycline and sulfonamide resistance genes (n = 15 targets), and correlated to soil physical, chemical, and biological parameters. Tetracycline and sulfonamide antibiotic resistance genes (ARGs) were found in soils from all 12 …

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Sifting And Winnowing: Analysis Of Farmer Field Data For Soybean In The Us North-Central Region, Spyridon Mourtzinis, Juan I. Rattalino Edreira, Patricio Grassini, Adam C. Roth, Shaun N. Casteel, Ignacio A. Ciampitti, Hans J. Kandel, Peter M. Kyveryga, Mark A. Licht, Laura E. Lindsey, Daren S. Mueller, Emerson D. Nafziger, Seth L. Naeve, Jordan Stanley, Michael J. Staton, Shawn P. Conley

Department of Agronomy and Horticulture: Faculty Publications

Field trials are commonly used to estimate the effects of different factors on crop yields. In the present study, we followed an alternative approach to identify factors that explain field-to-field yield variation, which consisted of farmer survey data, a spatial framework, and multiple statistical procedures. This approach was used to identify management factors with strongest association with on-farm soybean yield variation in the US North Central (NC) region. Field survey data, including yield and management information, were collected over two crop growing seasons (2014 and 2015) from rainfed and irrigated soybean fields (total of 3568 field-year observations). Fields were grouped …

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Terrestrial Coarse Woody Debris, Erin C. Rowekamp, Julia I. Chapman, Ryan W. Mcewan

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No abstract provided.

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Lonicera Maackii Berry Leachate Toxicity: Physicochemical Data, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

In-stream (in situ) and in-lab microcosm trials using Hyalella azteca, Anthopotamus verticis, and Allocapnia spp.

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Application Of Machine Learning Methodologies For Predicting Corn Economic Optimal Nitrogen Rate, Zhisheng Qin, D. Brenton Myers, Curtis J. Ransom, Newell R. Kitchen, Sang-Zi Liang, James J. Camberato, Paul R. Carter, Richard B. Ferguson, Fabian G. Fernandez, David W. Franzen, Carrie A. M. Laboski, Brad D. Malone, Emerson D. Nafziger, John E. Sawyer, John F. Shanahan

Department of Agronomy and Horticulture: Faculty Publications

Determination of in-season N requirement for corn (Zea mays L.) is challenging due to interactions of genotype, environment, and management. Machine learning (ML), with its predictive power to tackle complex systems, may solve this barrier in the development of locally based N recommendations. The objective of this study was to explore application of ML methodologies to predict economic optimum nitrogen rate (EONR) for corn using data from 47 experiments across the US Corn Belt. Two features, a water table adjusted available water capacity (AWC_wt) and a ratio of in-season rainfall to AWC_wt (RAWC_wt), were …

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Water Toxicity Effects Test: Survival And Growth (Dry Mass), Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

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No abstract provided.

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Sediment Toxicity Effects Test, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

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No abstract provided.

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Wetted Width, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

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No abstract provided.

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Within-Stream Variability Data, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

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No abstract provided.

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Water Toxicity Effects Test: Physicochemical Data, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

No abstract provided.

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Sediment % Solids And Total Organic Carbon, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

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No abstract provided.

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Site Characteristics, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

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Stream order, HHEI, Watershed size, Forest Cover, Maximum pool depth

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Lonicera Maackii Leaf Leachate Toxicity: Survival, Eric B. Borth, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

Data Files

Lymnaea stagnalis and Hyalella azteca

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Sapling, Erin C. Rowekamp, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

No abstract provided.

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Lonicera Maackii Berry Leachate Toxicity: Survival And Mass, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

In-stream (in situ) and in-lab microcosm trials using Hyalella azteca, Anthopotamus verticis, and Allocapnia spp.

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Honeysuckle, Erin C. Rowekamp, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

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No abstract provided.

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Probe Data, Charlotte A. Shade, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

Data Files

Temperature, Dissolved oxygen, Conductivity, pH, Total dissolved solids

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Terrestrial Fine Woody Debris, Erin C. Rowekamp, Julia I. Chapman, Ryan W. Mcewan

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No abstract provided.

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Herbaceous Vegetation: August, Julia I. Chapman, Margaret E. Maloney, Erin C. Rowekamp, Mitchell J. Kukla, Sean D. Mahoney, Eric B. Borth, Ryan W. Mcewan

Data Files

August

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Time To Colonization Trial Data, Margaret E. Maloney, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

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No abstract provided.

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Full-Text Articles in Botany

Lonicera Maackii Leaf Feeding Tests: Survival, Growth, Loss Of Leaf Mass, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

Data Files

Lonicera Maackii Leaf Leachate Toxicity: Physicochemical Data, Eric B. Borth, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

Data Files

Optimising The Identification Of Causal Variants Across Varying Genetic Architectures In Crops, Chenyong Miao, Jinliang Yang, James C. Schnable

Department of Agronomy and Horticulture: Faculty Publications

Transcriptional Reprogramming Of Legume Genomes: Perspective And Challenges Associated With Single-Cell And Single Cell-Type Approaches During Nodule Development, Marc Libault

Department of Agronomy and Horticulture: Faculty Publications

First Case Of Glufosinate-Resistant Rigid Ryegrass (Lolium Rigidum Gaud.) In Greece, Ilias S. Travlos, Nikolina Cheimona, Rafael De Prado, Amit J. Jhala, Demosthenis Chachalis, Eleni Tani

Department of Agronomy and Horticulture: Faculty Publications

Empowerment And Tech Adoption: Introducing The Treadle Pump Triggers Farmers’ Innovation In Eastern Ethiopia, Shimelis Beyene, Teshome H. Regassa, Belaineh Legesse, Martha Mamo, Tsegaye Tadesse

Department of Agronomy and Horticulture: Faculty Publications

Beyond The Plot: Technology Extrapolation Domains For Scaling Out Agronomic Science, Juan I. Rattalino Edreira, Kenneth G. Cassman, Zvi Hochman, Martin K. Van Ittersum, Lenny Van Bussel, Lieven Claessens, Patricio Grassini

Department of Agronomy and Horticulture: Faculty Publications

Is Conservation Agriculture A Potential Option For Cereal-Based Sustainable Farming System In The Eastern Indo-Gangetic Plains Of Nepal?, Dipendra Pokharel, Raj Kant Jha, Thakur Prasad Tiwari, Mahesh Kumar Gathala, Hari Krishna Shrestha, Dinesh Panday

Department of Agronomy and Horticulture: Faculty Publications

Department of Agronomy and Horticulture: Faculty Publications

Impaired Phloem Loading In Zmsweet13a,B,C Sucrose Transporter Triple Knock-Out Mutants In Zea Mays, Margaret Bezrutczyk, Thomas Hartwig, Marc Horschman, Si Nian Char, Jinliang Yang, Bing Yang, Wolf B. Frommer, Davide Sosso

Department of Agronomy and Horticulture: Faculty Publications

Tetracycline And Sulfonamide Antibiotic Resistance Genes In Soils From Nebraska Organic Farming Operations, Marylynn Cadena, Lisa M. Durso, Daniel N. Miller, Heidi M. Waldrip, B. L. Castleberry, Rhae A. Drijber, Charles S. Wortmann

Department of Agronomy and Horticulture: Faculty Publications

Department of Agronomy and Horticulture: Faculty Publications

Terrestrial Coarse Woody Debris, Erin C. Rowekamp, Julia I. Chapman, Ryan W. Mcewan

Data Files

Lonicera Maackii Berry Leachate Toxicity: Physicochemical Data, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Department of Agronomy and Horticulture: Faculty Publications

Water Toxicity Effects Test: Survival And Growth (Dry Mass), Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Sediment Toxicity Effects Test, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Wetted Width, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Within-Stream Variability Data, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

Data Files

Water Toxicity Effects Test: Physicochemical Data, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Sediment % Solids And Total Organic Carbon, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Site Characteristics, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Lonicera Maackii Leaf Leachate Toxicity: Survival, Eric B. Borth, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

Data Files

Sapling, Erin C. Rowekamp, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Lonicera Maackii Berry Leachate Toxicity: Survival And Mass, Kevin W. Custer, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Honeysuckle, Erin C. Rowekamp, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files

Probe Data, Charlotte A. Shade, Kevin W. Custer, Julia I. Chapman, Ryan W. Mcewan

Data Files

Terrestrial Fine Woody Debris, Erin C. Rowekamp, Julia I. Chapman, Ryan W. Mcewan

Data Files

Herbaceous Vegetation: August, Julia I. Chapman, Margaret E. Maloney, Erin C. Rowekamp, Mitchell J. Kukla, Sean D. Mahoney, Eric B. Borth, Ryan W. Mcewan

Data Files

Time To Colonization Trial Data, Margaret E. Maloney, Eric B. Borth, Julia I. Chapman, Ryan W. Mcewan

Data Files