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Articles 1651 - 1680 of 2726
Full-Text Articles in Agronomy and Crop Sciences
The Suitability Of Energy Beets For Double-Cropping With Soybeans In The Arkansas Delta, Tyler Caleb Meadors
The Suitability Of Energy Beets For Double-Cropping With Soybeans In The Arkansas Delta, Tyler Caleb Meadors
Student Theses and Dissertations
The climate of the midsouthern USA allows increased potential for crop productivity through the double-crop production system (DCPS), by way of more intensive land usage. Despite this potential, DCPS utilization has decreased in Arkansas over the past 10 years, due, in part, to delayed soybean planting. An alternative winter crop with earlier harvest timing than winter wheat could lessen this risk, yet still capitalize on the area's winter crop potential. The objective of this study was to determine the agronomic viability of an energy beet/soybean DCPS in Arkansas. A field study was conducted in Jonesboro, AR from September 2012 to …
Soil Total Organic Carbon And Farmers’ Perceptions Associated With Bokashi Application In Cerro Punta, Panama, Emma Searson
Soil Total Organic Carbon And Farmers’ Perceptions Associated With Bokashi Application In Cerro Punta, Panama, Emma Searson
Independent Study Project (ISP) Collection
Sustainable use and maintenance of agricultural soils are important for maintaining long-term agricultural productivity and environmental quality. These issues are especially important in Cerro Punta, known as the breadbasket of Panama, which is experiencing severe erosion. While current practices and agrochemical usage damage soil health and function over time, application of organic material improves soil physic-chemical properties such as nutrient and total organic carbon (TOC) content. Bokashi, a fermented organic soil amendment with effective microorganisms (EM), is thought to be especially beneficial due to its ability to augment populations of soil microbes, which deliver plant-available nutrients to crops and improve …
Evaluation And Association Mapping Of Resistance To Tan Spot And Stagonospora Nodorum Blotch In Adapted Winter Wheat Germplasm, Zhaohui Liu, Ibrahim El-Basyoni, Gayan Kariyawasam, Guorong Zhang, Allan Fritz, Jana Hansen, Francois Marais, Andrew Friskop, Shiaoman Chao, Eduard Akhunov, P. Stephen Baenziger
Evaluation And Association Mapping Of Resistance To Tan Spot And Stagonospora Nodorum Blotch In Adapted Winter Wheat Germplasm, Zhaohui Liu, Ibrahim El-Basyoni, Gayan Kariyawasam, Guorong Zhang, Allan Fritz, Jana Hansen, Francois Marais, Andrew Friskop, Shiaoman Chao, Eduard Akhunov, P. Stephen Baenziger
Department of Agronomy and Horticulture: Faculty Publications
Tan spot and Stagonospora nodorum blotch (SNB), often occurring together, are two economically significant diseases of wheat in the Northern Great Plains of the United States. They are caused by the fungi Pyrenophora tritici-repentis and Parastagonospora nodorum, respectively, both of which produce multiple necrotrophic effectors (NE) to cause disease. In this work, 120 hard red winter wheat (HRWW) cultivars or elite lines, mostly from the United States, were evaluated in the greenhouse for their reactions to the two diseases as well as NE produced by the two pathogens. One P. nodorum isolate (Sn4) and four Pyrenophora tritici-repentis isolates (Pti2, …
Biology And Control Of Glyphosate-Resistant Giant Ragweed, Simranpreet Kaur
Biology And Control Of Glyphosate-Resistant Giant Ragweed, Simranpreet Kaur
Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research
Giant ragweed is a troublesome, early emerging, summer annual weed found throughout the eastern and midwestern corn and soybean growing regions of the United States. Since the emergence of giant ragweed varies at different locations, our first objective was to determine the emergence pattern of giant ragweed in Nebraska and how spring tillage influences emergence. Results of a two-year study suggested that giant ragweed emerged from late March until mid-June, with the majority of emergence ceasing by early May. Spring tillage could be used as an alternative method for managing glyphosate resistant giant ragweed.
Water stress can affect the growth …
Making Better Fertiliser Decisions For Cropping Systems In Western Australia. Soil Test – Crop Response Relationships And Critical Soil Test Values And Ranges, Geoff Anderson, Ross Brennan, Richard Bell, Wen Chen
Making Better Fertiliser Decisions For Cropping Systems In Western Australia. Soil Test – Crop Response Relationships And Critical Soil Test Values And Ranges, Geoff Anderson, Ross Brennan, Richard Bell, Wen Chen
Bulletins 4000 -
The better fertiliser decisions for cropping project (BFDC) (2009-2012) was completed to provide comprehensive information to improve fertiliser decisions for the cropping industry in Australia (Speirs et al. 2013a). The WA component provides interpretation of results from crop nutrient application experiments for the WA cropping system, and developed a tool for estimating nutrient losses from cropping systems soils.
The BFDC-WA project aims to use the 4R principles by producing a series of bulletins on nutrient management for the cropping system of WA.
Ua12/2/2 2015 Talisman: Resurgence, Wku Student Affairs
Ua12/2/2 2015 Talisman: Resurgence, Wku Student Affairs
WKU Administration Documents
2015 Talisman yearbook.
- Osborne Sam. Into the Woods – Big To-Do Music & Arts Festival
- Spalding, Shelley. The Outliers – Greeks
- Badjie, Haddy. The Right to Live – Racism
- Gibson, Helen. Net Worth – Soccer
- Greer, John. Sustaining Seasons – Sustainability
- Wegert, Sally. Bloom – Eva Ross
- Cislo, Everett. Harvest – Hemp
- Kolb, William. Preserve – John All
- Voorhees, Jessica. Making Strides – Track & Field
- Greer, John. The Science Guy – Bill Nye
- Cole, Tanner. Lip Service – Rocky Horror Picture Show
- Belknap, Abby. Race to the Senate
- Gibson, Helen. Game of Loans – Student Financial Aid
- Belknap, Abby. …
Message From The Editorial Board, John R. Clark
Message From The Editorial Board, John R. Clark
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Instructions For Authors, Discovery Editors
Instructions For Authors, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Bacterial Wilt Of Dry-Edible Beans In The Central High Plains Of The U.S.: Past, Present, And Future, Robert M. Harveson, Howard F. Schwartz, Carlos A. Urrea, C. Dean Yonts
Bacterial Wilt Of Dry-Edible Beans In The Central High Plains Of The U.S.: Past, Present, And Future, Robert M. Harveson, Howard F. Schwartz, Carlos A. Urrea, C. Dean Yonts
Panhandle Research and Extension Center
Bacterial wilt, caused by Curtobacterium flaccumfaciens pv. flaccumfaciens, was first recognized and described as a new dry bean disease near Redfield, South Dakota, after the 1921 growing season on the farm of the Office of Forage Investigations. The grower on this farm informed the federal investigators that he believed the disease to be the same one that killed 90% of his crop in 1920. For the 1921 season, he saved and planted the seed harvested from the previous year, resulting in an estimated 25% loss.
. . .
It is likely that wilt has “reappeared” and become widely established throughout …
Potential Break Crops For Managing Root-Knot Nematode, Carla Wilkinson, Stuart Vincent, Sarah J. Collins Dr
Potential Break Crops For Managing Root-Knot Nematode, Carla Wilkinson, Stuart Vincent, Sarah J. Collins Dr
Grain and Other Field Crops Research Articles
Western Australian growers may be unintentionally increasing root-knot nematode, Meloidogyne fallax (False Columbia root-knot nematode) populations by using susceptible break crops between cash crops.
Characterization Of Novel Sorghum Brown Midrib Mutants From An Ems-Mutagenized Population, Scott E. Sattler, Ana Saballos, Zhanguo Xin, Deanna L. Funnell-Harris, Wilfred Vermerris, Jeffrey F. Pedersen
Characterization Of Novel Sorghum Brown Midrib Mutants From An Ems-Mutagenized Population, Scott E. Sattler, Ana Saballos, Zhanguo Xin, Deanna L. Funnell-Harris, Wilfred Vermerris, Jeffrey F. Pedersen
Department of Agronomy and Horticulture: Faculty Publications
Reducing lignin concentration in lignocellulosic biomass can increase forage digestibility for
ruminant livestock and saccharification yields of biomass for bioenergy. In sorghum (Sorghum bicolor (L.) Moench) and several other C4 grasses, brown midrib (bmr) mutants have been shown to reduce lignin concentration. Putative bmr mutants isolated from an EMS-mutagenized population were characterized and classified based on their leaf midrib phenotype and allelism tests with the previously described sorghum bmr mutants bmr2, bmr6, and bmr12. These tests resulted in the identification of additional alleles of bmr2, bmr6, and bmr12, and, in addition, six bmr …
Assessment Of Rice Self-Sufficiency In 2025 In Eight African Countries, P. A.J. Van Oort, K. Saito, E. Amovin-Assagba, Lenny G.J. Van Bussel, Justin Van Wart, Hugo De Groot, Martin K. Van Ittersum, Kenneth Cassman, M. C.S. Wopereis
Assessment Of Rice Self-Sufficiency In 2025 In Eight African Countries, P. A.J. Van Oort, K. Saito, E. Amovin-Assagba, Lenny G.J. Van Bussel, Justin Van Wart, Hugo De Groot, Martin K. Van Ittersum, Kenneth Cassman, M. C.S. Wopereis
Department of Agronomy and Horticulture: Faculty Publications
Most African countries are far from self-sufficient in meeting their rice consumption; in eight countries the production: consumption ratio, ranged from 0.16 to 1.18 in 2012. We show that for the year 2025, with population growth, diet change and yield increase on existing land (intensification), countries cannot become fully self-sufficient in rice. This implies that for the future, a mixture of area expansion and imports will be needed on top of yield gap closure. Further research is needed for identification of most suitable new land for rice area expansion and areas that should be protected.
Patch Burning: Implications On Water Erosion And Soil Properties, Altingul Ozaslan Parlak, Mehmet Parlak, Humberto Blanco-Canqui, Walter H. Schacht, John A. Guretzky, Martha Mamo
Patch Burning: Implications On Water Erosion And Soil Properties, Altingul Ozaslan Parlak, Mehmet Parlak, Humberto Blanco-Canqui, Walter H. Schacht, John A. Guretzky, Martha Mamo
Department of Agronomy and Horticulture: Faculty Publications
Patch burning can be a potential management tool to create grassland heterogeneity and enhance forage productivity and plant biodiversity, but its impacts on soil and environment have not been widely documented. In summer 2013, we studied the effect of time after patch burning (4 mo after burning [recently burned patches], 16 mo after burning [older burned patches], and unburned patches [control]) on vegetative cover, water erosion, and soil properties on a patch-burn experiment established in 2011 on a Yutan silty clay loam near Mead, NE. The recently burned patches had 29 ± 8.0% (mean ± SD) more bare ground, 21 …
Stored Grain Pack Factors For Wheat: Comparison Of Three Methods To Field Measurements, Josephine M. Boac, Rumela Bhadra, Mark E. Casada, Sidney A. Thompson, Aaron P. Turner, Michael D. Montross, Samuel G. Mcneill, Ronaldo G. Maghirang
Stored Grain Pack Factors For Wheat: Comparison Of Three Methods To Field Measurements, Josephine M. Boac, Rumela Bhadra, Mark E. Casada, Sidney A. Thompson, Aaron P. Turner, Michael D. Montross, Samuel G. Mcneill, Ronaldo G. Maghirang
Biosystems and Agricultural Engineering Faculty Publications
Storing grain in bulk storage units results in grain packing from overbearing pressure, which increases grain bulk density and storage unit capacity. This study compared pack factors of hard red winter (HRW) wheat in vertical storage bins using different methods: the existing packing model (WPACKING), the USDA Risk Management Agency (RMA) method, and the USDA Farm Service Agency Warehouse Licensing and Examination Division (FSA-W) method. Grain bins containing HRW wheat were measured in Kansas, Oklahoma, and Texas. Packing was measured in corrugated steel bins and reinforced concrete bins with diameters ranging from 4.6 to 31.9 m (15.0 to 104.6 ft) …
Contents, Discovery Editors
Contents, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 16 2015, Several Authors
Discovery: The Student Journal Of Dale Bumpers College Of Agricultural, Food And Life Sciences - Volume 16 2015, Several Authors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Evaluating Physiological Responses Of Ten Alfalfa (Medicago Sativa Subsp. Falcata) Germplasm To Drought Treatments, Austin Hanson
Evaluating Physiological Responses Of Ten Alfalfa (Medicago Sativa Subsp. Falcata) Germplasm To Drought Treatments, Austin Hanson
The Journal of Undergraduate Research
Alfalfa is the most widely produced perennial forage legume in North America. However, its use in the semiarid northern Great Plains is limited due to poor stand establishment and persistence under drought condition. The development of drought-tolerant alfalfa cultivars is of great need. Some Medicago sativa subsp. falcata populations have demonstrated promising drought resistance when compared to M. sativa. Morphological and physiological mechanisms play a critical role in drought tolerance by influencing seedling survival, stand establishment and drought recovery. Assessment of variability in physiological responses to drought among germplasm lines to drought is necessary for developing cultivars with improved drought …
Transgenic Wheat Expressing A Barley Udp-Glucosyltransferase Detoxifies Deoxynivalenol And Provides High Levels Of Resistance To Fusarium Graminearum, Xi Li, Sanghyun Shin, Shane Heinen, Ruth Dill-Macky, Franz Berthiller, Natalya Nersesian, Thomas Clemente, Susan Mccormick, Gary J. Muehbauer
Transgenic Wheat Expressing A Barley Udp-Glucosyltransferase Detoxifies Deoxynivalenol And Provides High Levels Of Resistance To Fusarium Graminearum, Xi Li, Sanghyun Shin, Shane Heinen, Ruth Dill-Macky, Franz Berthiller, Natalya Nersesian, Thomas Clemente, Susan Mccormick, Gary J. Muehbauer
Department of Agronomy and Horticulture: Faculty Publications
Fusarium head blight (FHB), mainly caused by Fusarium graminearum, is a devastating disease of wheat that results in economic losses worldwide. During infection, F. graminearum produces trichothecene mycotoxins, including deoxynivalenol (DON), that increase fungal virulence and reduce grain quality. Transgenic wheat expressing a barley UDP-glucosyltransferase (HvUGT13248) were developed and evaluated for FHB resistance, DON accumulation, and the ability to metabolize DON to the less toxic DON-3-O-glucoside (D3G). Pointinoculation tests in the greenhouse showed that transgenic wheat carrying HvUGT13248 exhibited significantly higher resistance to disease spread in the spike (type II resistance) compared with nontransformed controls. Two transgenic …
Bumpers College Students In Action, Discovery Editors
Bumpers College Students In Action, Discovery Editors
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Letter From The Dean, Michael Vayda
Letter From The Dean, Michael Vayda
Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences
No abstract provided.
Fall Seed Guide 2015, Teshome Regassa, P. Stephen Baenziger, Stephen N. Wegulo, Greg Kruger, Dipak K. Santra
Fall Seed Guide 2015, Teshome Regassa, P. Stephen Baenziger, Stephen N. Wegulo, Greg Kruger, Dipak K. Santra
Department of Agronomy and Horticulture: Faculty Publications
Crops included in this guide are winter wheat, winter barley, and triticale. You may receive this guide in the mail or through the University of Nebraska Extension network. The data and other information this guide is can be found at our web site: http://cropwatch.unl.edu/varietytest/ and http://www.unl.edu/ncia. Additional information is available at the wheat variety virtual tour web site http://cropwatch.unl.edu/wheat/virtual or the winter wheat variety selection tool page http:// citnews.unl.edu/winter_wheat_tool/index.shtml. The last season was hard on Nebraska winter wheat. Emergence was poor in the west due to dry conditions. On the other hand, some plots in the east had to be …
Model And Sensor-Based Recommendation Approaches For In-Season Nitrogen Management In Corn, L. J. Thompson, R. B. Ferguson, N. Kitchen, D. W. Frazen, M. Mamo, H. Yang, J. S. Schepers
Model And Sensor-Based Recommendation Approaches For In-Season Nitrogen Management In Corn, L. J. Thompson, R. B. Ferguson, N. Kitchen, D. W. Frazen, M. Mamo, H. Yang, J. S. Schepers
Department of Agronomy and Horticulture: Faculty Publications
Nitrogen management for corn (Zea mays L.) may be improved by applying a portion of N in-season. This investigation was conducted to evaluate crop modeling (Maize-N) and active crop canopy sensing approaches for recommending in-season N fertilizer rates. These approaches were evaluated during 2012–2013 on 11 field sites, in Missouri, Nebraska, and North Dakota. Nitrogen management also included a no-N treatment (check) and a non-limiting N reference (all at planting). Nitrogen management treatments were assessed for two hybrids and at low and high seeding rates, arranged in a randomized complete block design. In 9 of 11 site-years, the sensor-based …
Potential For Crop Production Increase In Argentina Through Closure Of Existing Yield Gaps, Fernando Aramburu Merlos, Juan Pablo Monzon, Jorge L. Mercau, Miguel Taboada, Fernando H. Andrade, Antonio J. Hall, Esteban Jobbagy, Kenneth Cassman, Patricio Grassini
Potential For Crop Production Increase In Argentina Through Closure Of Existing Yield Gaps, Fernando Aramburu Merlos, Juan Pablo Monzon, Jorge L. Mercau, Miguel Taboada, Fernando H. Andrade, Antonio J. Hall, Esteban Jobbagy, Kenneth Cassman, Patricio Grassini
Department of Agronomy and Horticulture: Faculty Publications
Favorable climate and soils for rainfed crop production, together with a relatively low population density,results in 70–90% of Argentina grain production being exported. No assessment to date has tried to estimate the potential for extra grain production for soybean, wheat and maize, which account for 78%of total harvested area, by yield gap closure on existing cropland area and its impact at a global scale.The objectives of this paper are (i) to estimate how much additional grain could be produced without expanding crop area by closing yield gaps in Argentina, (ii) to investigate how this production and yield gaps varies across …
Plants Coping Abiotic And Biotic Stresses: A Tale Of Diligent Management, Hatem Rouached, Sikander Pal, Shimon Rachmilevitch, Marc Libault, Lam-Son Phan Tran
Plants Coping Abiotic And Biotic Stresses: A Tale Of Diligent Management, Hatem Rouached, Sikander Pal, Shimon Rachmilevitch, Marc Libault, Lam-Son Phan Tran
Department of Agronomy and Horticulture: Faculty Publications
Plants unlike other living forms are sessile thereby facing severe biotic and abiotic stresses. Plants have evolved different efficient defence responses which thrive upon a number of intrinsic factors, such as genotypic and phenotypic constitutions and developmental circumstances, and extrinsic factors like severity and duration of the stresses. Stress management uses molecular and biochemical level controls, the competence, and speed, at which a stress signal is perceived and transmitted to generate stress signal molecules and activate stress-protective mechanisms. A well-concerted action of the plants’ competence at morphological, physiological, biochemical, and molecular strata regulates numerous adaptive responses to biotic and abiotic …
Calibration And Validation Of The Hybrid-Maize Crop Model For Regional Analysis And Application Over The U.S. Corn Belt, Xing Liu, Jeff Andresen, Haishun Yang, Dev Niyogi
Calibration And Validation Of The Hybrid-Maize Crop Model For Regional Analysis And Application Over The U.S. Corn Belt, Xing Liu, Jeff Andresen, Haishun Yang, Dev Niyogi
Department of Agronomy and Horticulture: Faculty Publications
Detailed parameter sensitivity, model validation, and regional calibration of the Hybrid-Maize crop model were undertaken for the purpose of regional agroclimatic assessments. The model was run at both field scale and county scale. The county-scale study was based on 30-yr daily weather data and corn yield data from the National Agricultural Statistics Service survey for 24 locations across the Corn Belt of the United States. The field-scale study was based on AmeriFlux sites at Bondville, Illinois, andMead, Nebraska. By using the one-at-a-time and interaction-explicit factorial design approaches for sensitivity analysis, the study found that the five most sensitive parameters of …
Pack Factor Measurements For Corn In Grain Storage Bins, Rumela Bhadra, Aaron P. Turner, Mark E. Casada, Michael D. Montross, Sidney A. Thompson, Josephine M. Boac, Samuel G. Mcneill, Ronaldo G. Maghirang
Pack Factor Measurements For Corn In Grain Storage Bins, Rumela Bhadra, Aaron P. Turner, Mark E. Casada, Michael D. Montross, Sidney A. Thompson, Josephine M. Boac, Samuel G. Mcneill, Ronaldo G. Maghirang
Biosystems and Agricultural Engineering Faculty Publications
Shelled yellow corn is commonly stored in concrete or corrugated steel bins. Granular materials compact under their own weight, primarily due to particle rearrangement, leading to an increase in bulk density and a change in volume when stored. Reliable grain pack factors are needed to estimate storage capacities and to accurately monitor grain inventories. A science-based model (WPACKING) of pack factors is available that uses the differential form of Janssen's equation and takes into account the variation in density caused by pressure variation with height and moisture content of the grain and accounts for the effects of grain type, test …
Identification Of Novel Qtl Governing Root Architectural Traits In An Interspecific Soybean Population, Lakshmi P. Manavalan, Silvas J. Prince, Theresa A. Musket, Julian Chaky, Rupesh Deshmukh, Tri D. Vuong, Li Song, Perry B. Cregan, James C. Nelson, J. Grover Shannon, James E. Specht, Henry T. Nguyen
Identification Of Novel Qtl Governing Root Architectural Traits In An Interspecific Soybean Population, Lakshmi P. Manavalan, Silvas J. Prince, Theresa A. Musket, Julian Chaky, Rupesh Deshmukh, Tri D. Vuong, Li Song, Perry B. Cregan, James C. Nelson, J. Grover Shannon, James E. Specht, Henry T. Nguyen
Department of Agronomy and Horticulture: Faculty Publications
Cultivated soybean (Glycine max L.) cv. Dunbar (PI 552538) and wild G. soja (PI 326582A) exhibited significant differences in root architecture and root-related traits. In this study, phenotypic variability for root traits among 251 BC2F5 backcross inbred lines (BILs) developed from the cross Dunbar/PI 326582A were identified. The root systems of the parents and BILs were evaluated in controlled environmental conditions using a cone system at seedling stage. The G. max parent Dunbar contributed phenotypically favorable alleles at a major quantitative trait locus on chromosome 8 (Satt315-I locus) that governed root traits (tap root length and …
Genetic And Molecular Characterization Of Submergence Response Identifies Subtol6 As A Major Submergence Tolerance Locus In Maize, Malachy T. Campbell, Christopher A. Proctor, Yongchao Dou, Aaron J. Schmitz, Piyaporn Phansak, Greg R. Kruger, Chi Zhang, Harkamal Walia
Genetic And Molecular Characterization Of Submergence Response Identifies Subtol6 As A Major Submergence Tolerance Locus In Maize, Malachy T. Campbell, Christopher A. Proctor, Yongchao Dou, Aaron J. Schmitz, Piyaporn Phansak, Greg R. Kruger, Chi Zhang, Harkamal Walia
Department of Agronomy and Horticulture: Faculty Publications
Maize is highly sensitive to short term flooding and submergence. Early season flooding reduces germination, survival and growth rate of maize seedlings. We aimed to discover genetic variation for submergence tolerance in maize and elucidate the genetic basis of submergence tolerance through transcriptional profiling and linkage analysis of contrasting genotypes. A diverse set of maize nested association mapping (NAM) founder lines were screened, and two highly tolerant (Mo18Wand M162W) and sensitive (B97 and B73) genotypes were identified. Tolerant lines exhibited delayed senescence and lower oxidative stress levels compared to sensitive lines. Transcriptome analysis was performed on these inbreds to provide …
Allmaps: Robust Scaffold Ordering Based On Multiple Maps, Haibo Tang, Xingtan Zhang, Chenyong Miao, Jisen Zhang, Ray Ming, James C. Schnable, Patrick S. Schnable, Eric Lyons, Jianguo Lu
Allmaps: Robust Scaffold Ordering Based On Multiple Maps, Haibo Tang, Xingtan Zhang, Chenyong Miao, Jisen Zhang, Ray Ming, James C. Schnable, Patrick S. Schnable, Eric Lyons, Jianguo Lu
Department of Agronomy and Horticulture: Faculty Publications
The ordering and orientation of genomic scaffolds to reconstruct chromosomes is an essential step during de novo genome assembly. Because this process utilizes various mapping techniques that each provides an independent line of evidence, a combination of multiple maps can improve the accuracy of the resulting chromosomal assemblies. We present ALLMAPS, a method capable of computing a scaffold ordering that maximizes colinearity across a collection of maps. ALLMAPS is robust against common mapping errors, and generates sequences that are maximally concordant with the input maps. ALLMAPS is a useful tool in building high-quality genome assemblies. ALLMAPS is available at: https://github.com/tanghaibao/jcvi/wiki/ALLMAPS.
How Good Is Good Enough? Data Requirements For Reliable Crop Yield Simulations And Yield-Gap Analysis, Patricio Grassini, Lenny G.J. Van Bussel, Justin Van Wart, Joost Wolf, Lieven Claessens, Haishun Yang, Hendrik Boogaard, Hugo De Groot, Martin K. Van Ittersum, Kenneth Cassman
How Good Is Good Enough? Data Requirements For Reliable Crop Yield Simulations And Yield-Gap Analysis, Patricio Grassini, Lenny G.J. Van Bussel, Justin Van Wart, Joost Wolf, Lieven Claessens, Haishun Yang, Hendrik Boogaard, Hugo De Groot, Martin K. Van Ittersum, Kenneth Cassman
Department of Agronomy and Horticulture: Faculty Publications
Numerous studies have been published during the past two decades that use simulation models to assess crop yield gaps (quantified as the difference between potential and actual farm yields), impact of climate change on future crop yields, and land-use change. However, there is a wide range in quality and spatial and temporal scale and resolution of climate and soil data underpinning these studies, as well as widely differing assumptions about cropping-system context and crop model calibration. Here we present an explicit rationale and methodology for selecting data sources for simulating crop yields and estimating yield gaps at specific locations that …