Marine Biology Commons^™

Summer/Fall 2007, Nsu Oceanographic Center

Currents

No abstract provided.

The Statistics Of Natural Shapes In Modern Coral Reef Landscapes, Samuel J. Purkis, Kevin E. Kohler, Bernhard Riegl, Steven O. Rohmann

Marine & Environmental Sciences Faculty Articles

Spatial heterogeneity is a fundamental characteristic of modern and ancient depositional settings, and the scaling of many carbonate environments has been shown to follow power function distributions. The difficulty in obtaining information on the horizontal persistence of sedimentary lithotopes at the basin scale has, however, hampered evaluation of this fact over larger geographic areas. In recent years, large‐scale maps of reef facies derived from remotely sensed data have become widely available, allowing for an analysis of reef‐scale map products from 26 sites spread through four reef provinces, covering >7000 km² of shallow‐water habitat in the U.S. territorial Pacific. For …

First Observations On The Re-Established Southeast Florida Recreational Swordfish Tournament Fishery, Juan C. Levesquee, David W. Kerstetter

Marine & Environmental Sciences Faculty Articles

Recreational tournaments for swordfish (Xiphias gladius) existed in the Florida Straits between 1977 and 1983 before disappearing due to low catch rates and an overexploitation of the stock. The first recent swordfish tournament occurred in 2001 off southeast Florida with 13 participating vessels. In 2002, three swordfish tournaments were observed and anglers were interviewed to determine catch and gear characteristics of the re-established recreational fishery. A total of 156 vessels participated in these three tournaments, catching 112 swordfish and hooking an additional 48 animals. The combination of the recovery of the North Atlantic swordfish stock and the continuation …

Evaluation Of Methods To Enhance Reef Restoration, David S. Gilliam, Alison L. Moulding, Vladimir N. Kosmynin, Vanessa I. P. Brinkhuis, Richard E. Dodge

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The coral reefs of southeast Florida are offshore a highly urbanized area with a population exceeding 5 million people and three major shipping ports with over 6000 ships calling on an annual basis. Reef injury events are common and have been caused by ship groundings and marine construction activities such as channel dredging and cable placement. Restoration activities generally only include the reattachment of dislodged stony corals, removal of rubble, and boulder stabilization. The Florida Department of Environmental Protection has recognized these limited activities and is collaborating with Nova Southeastern University’s Oceanographic Center to study ways to accelerate coral reef …

Analysis Of Factors Influencing Southeast Florida Coral Reef Community Composition, M. A. Phillips, David S. Gilliam, L. K. B. Jordan, Richard E. Dodge, Louis E. Fisher

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The southeast Florida reef system lies offshore a heavily populated and urbanized coast. These high latitude reefs are not only affected by their geography but also by anthropogenic factors that accompany an urban area such as dredging activities, ship groundings, waste water outfalls, runoff and beach erosion. Sedimentation has been shown to influence stony coral community composition including dominance, abundance, cover, diversity, and colony size. Using annual monitoring data collected since 2000, the southeastern Florida reef community is being analyzed to examine if and how sedimentation and other factors such as depth, distance from shore and distance from port channels …

Rapid Response And Restoration For Coral Reef Injuries In Southeast Florida: Guidelines And Recommendations, Chantal Collier, Richard E. Dodge, David S. Gilliam, Kelly Gracie, Lisa Gregg, Walter Jaap, Mike Mastry, Nikki Poulos

Marine & Environmental Sciences Faculty Reports

From the time an injury to coral reef resources is reported, a well-coordinated and implemented plan is critical to the success of response and restoration efforts. There are three major plan components, each of which is equally important: (1) the Initial Response period immediately following notification of the incident; (2) the Response period, during which the Responsible Party (RP) is identified, the Trustees and RP carry out their respective responsibilities, a Primary Restoration plan is developed, authorizations and contractors to conduct restoration activities are sought and obtained, and primary restoration activities are conducted; and (3) the Post-Response period, which is …

Southeast Florida Coral Reef Evaluation And Monitoring Project 2006 Year 4 Final Report, Jennifer Wheaton, Carl Beaver, Sandra Brooks, Michael Callahan, Shannon Wade, Jeff Beal, Chantal Collier, Laura Herren, Jamie Monty, David S. Gilliam, Vanessa I. P. Brinkhuis, Daniel P. Fahy, Shaun M. Gill, Lindsey Habakuk Klink, M. A. Philips, Nicole R. Stephens, Brian K. Walker, Joanna C. Walczak, Richard E. Dodge, Tim Mcintosh, Steven Blair, Kenneth Banks, Louis E. Fisher, David Stout, Joe Ligas, Janet Phipps

Marine & Environmental Sciences Faculty Reports

No abstract provided.

A Comprehensive Wetland Program For Fringing Salt Marshes In The York River, Maine, Pamela A. Morgan, Jeremy Miller, Christopher Cayce Dalton, Michele Dionne

Environmental Studies Faculty Publications

The overall goal of this project was to assist the Town of York, Maine, in its efforts to monitor and protect the fringing salt marshes along the York River. In particular, the project focused on potential impacts to the marshes due to shoreline development pressures. Specific objectives included (1) gathering baseline data about the marshes (2) developing a set of indicators to be used in future monitoring, and (3) generating management recommendations.

New Species And Host Associations Of Commensal Leucothoid Amphipods From Coral Reefs In Florida And Belize (Crustacea:Amphipoda), James Darwin Thomas, Kristine N. Klebba

Marine & Environmental Sciences Faculty Articles

Six new amphipod species in the genus Leucothoe from the tropical western Atlantic Ocean are described and illustrated. Extensive field collecting and specialized underwater collecting techniques have documented 43 new invertebrate host records for these new taxa. Four of these new species inhabit interior canals of sponges; Leucothoe barana n.sp., Leucothoe garifunae n.sp., Leucothoe saron n.sp., and Leucothoe ubouhu n.sp. A remarkable new species, Leucothoe flammosa n.sp., nestles in the gills of seven species of bivalve mollusks. A single species, Leucothoe wuriti n.sp., appears restricted to the branchial chamber of two species of solitary ascidians. Detailed illustrations and scanning electron …

Meso- And Bathypelagic Fish Interactions With Seamounts And Mid-Ocean Ridges, Tracey Sutton, Filipe M. Porteiro, John K. Horne, Cairistiona I. H. Anderson

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The World Ocean's midwaters contain the vast majority of Earth's vertebrates in the form of mesoand bathypelagic ('deep-pelagic,' in the combined sense) fishes. Understanding the ecology and variability of deep-pelagic ecosystems has increased substantially in the past few decades due to advances in sampling/observation technology. Researchers have discovered that the deep sea hosts a complex assemblage of organisms adapted to a “harsh” environment by terrestrial standards (i.e., dark, cold, high pressure). We have learned that despite the lack of physical barriers, the deep-sea realm is not a homogeneous ecosystem, but is spatially and temporally variable on multiple scales. While there …

Fisheries Research Report No.161 - Distribution And Abundance Of Juvenile Pink Snapper, Pagrus Auratus, In The Gulfs Of Shark Bay, Western Australia, From Trap Surveys, Gary Jackson, C. Burton, Michael J. Moran, Ben Radford

Fisheries Research Reports

Trap surveys using Antillean-Z fish traps were carried out across a range of depths and habitat types in the gulfs of Shark Bay between 1998 and 2000. Objectives of the study were (i) to evaluate the efficiency of the fish traps in catching 0+ and 1+ pink snapper (Pagrus auratus), (ii) to investigate the distribution and abundance of juvenile pink snapper in both gulfs using trap surveys, (iii) to investigate the influence of environmental factors including habitat-type on the distribution of juvenile pink snapper and, (iv) to develop trap indices of 0+ relative abundance and assess their use for monitoring …

Spring 2007, Nsu Oceanographic Center

Currents

No abstract provided.

Stalked Crinoid Locomotion, And Its Ecological And Evolutionary Implications, Tomasz K. Baumiller, Charles G. Messing

Marine & Environmental Sciences Faculty Articles

In the past two decades, much direct evidence has been gathered on active crawling by stalked crinoids, a group generally thought to be sessile. Detailed descriptions of crawling mechanics of isocrinids in aquaria revealed only exceedingly slow movements (~0.1 mm sec^-1). Crawling at such speeds severely restricted the range of roles that this behavior could play in stalked crinoid biology and, consequently, in its potential impact on their ecology and evolutionary history. Here, we provide evidence collected in situ by submersible near Grand Bahama Island at a depth of 420 m for a different mode of crawling in …

Interactions Between Phytoplankton And Bacteria In The Uptake Of Organic Compounds, Andrea Michel Rocha

OES Theses and Dissertations

The most common methods for estimating bacterial productivity are [³H]-leucine and [³H]-thymidine incorporation. Uptake of these compounds has been attributed primarily to bacteria; however, because dissolved organic nitrogen may be an important N source for some phytoplankton, the use of these compounds to estimate bacterial productivity needs to be reexamined. In order to ascertain whether phytoplankton could compete with bacteria on relevant timescales and thereby bias bacterial productivity estimates in estuaries, I examined the ability of cultured phytoplankton and size-fractionated natural populations to take up leucine and thymidine in systems seasonally dominated by phytoplankton mixotrophs. In …

Development Of Gis Maps For Southeast Florida Coral Reefs, Bernhard Riegl, Brian K. Walker, Greg Foster, Kristy Foster

Marine & Environmental Sciences Faculty Reports

The present report outlines the results of an integrated mapping project undertaken to provide habitat maps of the shallow Palm Beach County seafloor between the 6m and 35m contours. This study is a continuation of a similar mapping study undertaken in Broward County, and results were produced such that a seamless and fully compatible mapping product is now available for both counties. The study area stretched from 26.4429o (E. Linton Blvd) in the south to 26.9590o (Jupiter Inlet) in the north. Compatibility with other, in particular NOAA, mapping products was also assured. Data types used in this mapping effort included …

Fisheries Research Report No.159 - A 12-Month Survey Of Recreational Estuarine Fishing In The South Coast Bioregion Of Western Australia During 2002/03, C.B. Smallwood, N. R. Sumner

Fisheries Research Reports

The Recreational Fisheries Program of the Department of Fisheries, Western Australia, has a strategic plan to conduct comprehensive creel surveys of recreational fishing in each of the state’s marine bioregions (Penn et al., 2003). These bioregions are the West Coast, Gascoyne, Pilbara/ Kimberley and South Coast (Figure 1). To record and monitor changes in recreational catch and fishing effort, an integrated approach where all bioregions are to be surveyed on a regular basis was proposed. Until this study, the South Coast was the only bioregion in which a survey of recreational fishing had not been undertaken. Although originally intended to …

Preliminary Observations On The Reproductive Cycle And Uterine Fecundity Of The Yellow Stingray, Urobatis Jamaicensis (Elasmobranchii: Mylioba Tiformes: Urolophidae) In Southeast Florida, U.S.A., Daniel P. Fahy, Richard E. Spieler, William C. Hamlett

Marine & Environmental Sciences Faculty Articles

The yellow stingray, Urobatis jamaicensis is the most common elasmobranch observed among the coral reefs and associated habitats of Southeast Florida, U.S.A. In coastal waters off Broward County, Florida, gravid females were observed throughout the year. Urobatis jamaicensis is an aplacental viviparous species with evidence of a short gestation period (five to six months). Vitellogenesis occurs concurrently with gestation, with the females having both term fetuses and mature ova simultaneously. It is likely that the females have a bi-annual reproductive cycle where each female is capable of producing two broods annually. The ovulation period in the spring/summer reproductive cycle ranged …

Joint United States-Brazil Billfish Research In The Western South Atlantic, David W. Kerstetter, Fabio H.V. Hazin, J. C. Pacheco, John E. Graves

Marine & Environmental Sciences Faculty Reports

A joint research project between Brazilian and U.S. scientists was initiated in 2004 to investigate the interaction of istiophorid billfishes with pelagic longline fisheries in the western equatorial South Atlantic Ocean. This project incorporates two general themes (1) an investigation into several aspects of pelagic longline operations by comparing catch results between circle and “J” style hooks, time-of-capture with hook time recorders, and by direct monitoring of pelagic longline gear behavior, and (2) an additional evaluation of billfish trophic ecology using a combination of satellite tag technology and traditional analyses (e.g., gut contents and ageing). Data obtained from this research …

Post-Release Survival Of Sailfish (Istiophorus Platypterus) Captured On Commercial Pelagic Longline Gear In The Southern Gulf Of Mexico, David W. Kerstetter, John E. Graves

Marine & Environmental Sciences Faculty Reports

To estimate post-release survival of sailfish caught incidentally to regular commercial pelagic longline fishing operations in the southern Gulf of Mexico targeting mixed swordfish and tunas, ten pop-up satellite archival tags were deployed for ten days on incidentally captured animals. All ten tags transmitted following the full deployment period, transmitting 25-82% of the archived data. Repeated, short-duration movements at depth and horizontal displacement data from were consistent with survival of those nine of the ten animals for the ten-day deployment period. The results of this study indicate that sailfish can survive the trauma resulting from interaction with pelagic longline gear …

Preliminary Results Of Circle And J-Style Hook Comparisons In The Brazilian Pelagic Longline Fishery, David W. Kerstetter, J. C. Pacheco, Fabio H.V. Hazin, P. E. Travassos, John E. Graves

Marine & Environmental Sciences Faculty Reports

Preliminary studies in western North Atlantic pelagic longline fisheries indicate that a change in terminal gear from J-style hooks to circle hooks may reduce bycatch mortality. However, such studies have not examined the impact of this change in the equatorial fishery. Catch composition, catch rates, hooking location, and condition at haulback were monitored during 26 sets in the commercial longline fishery operating in the western equatorial South Atlantic where circle (size 18/0, non-offset) and J-style (size 9/0 and 10/0, 10° offset) hooks were deployed in an alternating fashion. Catch rates for yellowfin tuna, swordfish, and a composite “all fishes” category …

The Crinoid Fauna (Echinodermata: Crinoidea) Of Palau, Charles G. Messing

Marine & Environmental Sciences Faculty Articles

Taxonomic revisions and a recent survey using scuba place the number of shallow-water (< 50 m) crinoid species known from Palau at 22. Five are new records: Clarkcomanthus littoralis, Comanthus suavia, Alloeocomatella pectinifera, Oxycomanthus comanthipinna, and O. exilis. A submersible survey (to 310 m) recovered five additional new records, four of which are the first representatives of their families from Palauan waters:Eudiocrinus venustulus (Eudiocrinidae), Glyptometra sp. (Charitometridae), Cosmiometra belsuchel Messing, n. sp. (Thalassometridae), and Porphyrocrinus verrucosus(Phrynocrinidae), the first stalked crinoid recorded from Palau. Two of the three specimens of the latter have regenerating crowns, suggesting that this species may be subject to substantial predation or an …

Surface Associated Amoebae On The Ctenophore, Mnemiopsis Sp., Connie S. Versteeg

HCNSO Student Theses and Dissertations

Previous work by Moss et al. (2001) reported surface associated protists on the ctenophore Mnemiopsis sp. They frequently observed the ciliate Trichodina ctenophorii and a Flabellula-like amoeba attached to the comb plate surface. They noted that the ciliate and the amoeba were found on the subsagittal, subtentacular, and the auricular comb plates. The amoeba had a maximum width of about 15 μm and cells were crescent shaped. Ultrastructural evidence suggested that these protists were parasites although the exact nature of the association remained to be determined. This was the background for the present study.

The present investigation documented the …

Comparison Of Fish Assemblages Between Mitigation Boulder Reef And Neighboring Natural Hardbottom In Broward County, Florida, Usa, Jessica A. Freeman

HCNSO Student Theses and Dissertations

A beach renourishment project was initiated in May 2005 and completed in February 2006 to restore 11.1 km of shoreline in Broward County, Florida, USA. For mitigation of predicted nearshore hardbottom burial, a boulder reef totaling 3.6 ha was deployed in 2003. To examine the replacement value of the mitigation relative to fishes, this study compared fish assemblages on boulder reef to those on adjacent natural hardbottom. Twenty-five natural hardbottom sites and twenty-five boulder reef sites were surveyed six times between March 2005 and August 2007. Two non-destructive visual census methods, a transect count (30 m long x 2 m …

Simulations Of Phytoplankton Species And Carbon Production In The Equatorial Pacific Ocean 1. Model Configuration And Ecosystem Dynamics, Baris Salihoglu, Eileen E. Hofmann

OES Faculty Publications

The primary objective of this research is to investigate phytoplankton community response to variations in physical forcing and biological processes in the Cold Tongue region of the equatorial Pacific Ocean at 0N, 140W. This research objective was addressed using a one-dimensional multicomponent lower trophic level ecosystem model that includes detailed algal physiology, such as spectrally-dependent photosynthetic processes and iron limitation on algal growth. The ecosystem model is forced by a one-year (1992) time series of spectrally-dependent light, temperature, and water column mixing obtained from a Tropical Atmosphere-Ocean (TAO) Array mooring. Autotrophic growth is represented by five algal groups, which have …

Co2 Control Of Trichodesmium N-2 Fixation, Photosynthesis, Growth Rates, And Elemental Ratios: Implications For Past, Present, And Future Ocean Biogeochemistry, D. A. Hutchins, F.-X. Fu, Y. Zhang, M. E. Warner, Y. Feng, K. Portune, P. W. Bernhardt, M. R. Mulholland

OES Faculty Publications

Diazotrophic marine cyanobacteria in the genus Trichodesmium contribute a large fraction of the new nitrogen entering the oligotrophic oceans, but little is known about how they respond to shifts in global change variables such as carbon dioxide (CO₂) and temperature. We compared Trichodesmium dinitrogen (N₂) and CO₂ fixation rates during steady-state growth under past, current, and future CO₂ scenarios, and at two relevant temperatures. At projected CO₂ levels of year 2100 (76 Pa, 750 ppm), N₂ fixation rates of Pacific and Atlantic isolates increased 35-100%, and CO₂ fixation rates increased 15-128% …

Light Environment And Seasonal Dynamics Of Microalgae In The Annual Sea Ice At Terra Nova Bay, Ross Sea, Antarctica, L. Lazzara, I. Nardello, C. Ermanni, O. Mangoni, V. Saggiomo

OES Faculty Publications

We investigated the physical conditions of the Spring pack ice environment at Terra Nova Bay to understand their influence on the structure and physiology of sympagic microalgae. Bio-optical methods were used to study the availability and spectral quality of solar radiation, both inside and underneath the ice cover. Pack ice thickness was around 2.5 m, with a temperature between -2 and -7°C. On average, only 1.4% of surface PAR penetrated to the bottom ice and less than 0.6% below platelet ice level. Surface UV-B radiation under the bottom ice was 0.2-0.4%. Biomass concentrations up to 2400 mg Chl a m- …

Otolith Chemistry Reflects Frontal Systems In The Antarctic Circumpolar Current, J. R. Ashford, A. I. Arkhipkin, C. M. Jones

OES Faculty Publications

Pronounced environmental trends across fronts suggest that the otolith chemistry of oceanic fish can resolve zones on either side, promoting application to population questions at similar spatial scales. Trace and minor elements laid down immediately prior to capture - along the edges of otoliths from Patagonian toothfish Dissostichus eleginoides - discriminated frontal zones in the Antarctic Circumpolar Current in the Southwestern Atlantic Ocean. Mean values differentiated sampling areas by up to 2.6 standard deviations, suggesting: (1) otolith Mg/Ca enrichment related to fish activity around the Burdwood Bank; (2) Mn/Ca enrichment associated with South America; (3) Sr/Ca linked to the presence …

Grazing Impacts Of Diverse Zooplankton Taxa On Thin Layers, Alexander Bochdansky

OES Faculty Publications

The US Navy needs to know how distributions and abundances of light-scattering and sound-scattering organisms in the ocean vary in space and time, particularly in the vertical dimension. Recent field observations have shown that many biological properties may vary substantially over small e.g. centimeter scales, commonly referred to as thin layers e.g. Cowles et al. 1998, 1999, Hanson Donaghay 1998, Holliday et al. 1999, Dekshenieks et al. 2001, Alldredge et al. 2002, Rines et al. 2002. Our previous ONR-funded research has allowed us to begin to understand how zooplankton interact with thin layers and how they can take advantage of …

Winter 2007, Nsu Oceanographic Center

Currents

No abstract provided.

Inside The Rainforests Of The Sea: Coral Reefs And Their Endangerment, Roxanne Greitz Miller

Education Faculty Articles and Research

This article focuses on coral reefs and their endangerment.