Marine Biology Commons^™

The Importance Of Stealth: Recent Findings With The Eye-In-The-Sea Deep-Sea Observatory, Edith A. Widder, E. H. Raymond, Tracey Sutton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Eye-in-the-Sea (EITS) observatory was designed to be acoustically quiet and to use far-red illumination to observe deep-sea animals unobtrusively. The EITS has clearly demonstrated the critical importance of stealth in research ocean observatories. Its use has revealed both animals and behaviors never seen before. Additionally recordings of animal activity under different lighting conditions and in the presence or absence of different sound-producing vehicles (ROVs and submersibles) have revealed to what extent tools for exploration bias observations. Recent recordings made during a 2007 NOAA Ocean Exploration mission to deep waters around the Bahamas provide excellent additional examples of the importance …

Real-Time Coral Stress Observations Before, During, And After Beach Nourishment Dredging Offshore Se Florida, L. Fisher, Kenneth Banks, David S. Gilliam, Richard E. Dodge, D. Stout, Bernardo Vargas-Ángel, Brian K. Walker

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Beach nourishment in Southeast Florida involves dredging sand source borrow areas located between offshore reefs. From May 2005 to February 2006 Broward County, FL. nourished 10.9 km of beach with 1.5 ×106 m3 of sand. As part of a program to monitor potential reef community impacts, a visual stress index was developed from laboratory experiments and histological analyses for three stony coral species (Montastrea cavernosa, Solenastrea bournoni, and Siderastrea siderea). Scoring involved healthy = 0; moderately stressed = 1 (polyp swelling, increased mucus); markedly stressed = 2 (coloration changes, increased mucus secretion, tissue thinning); and severely stressed = 3 (severe …

Fisheries Research Report No.172 - Identifying Obstacles To Profitably Growing Out Western Rock Lobsters, Roy Melville-Smith, Danielle Johnston, B. Johnston, N. J. Thomson

Fisheries Research Reports

A Report Prepared for the Aquaculture Development Council.

The cost of growing out western rock lobsters from pueruli to marketable-sized lobsters has been modeled from available information. The model uses different scenarios of survival rates, marketing weights, market prices, feed costs, puerulus prices, labour costs, puerulus compensation costs, discount rates and capital costs. The sensitivity of estimated profitability to various input costs and rock lobster prices was assessed by estimating the impact of changes on the estimates of net present value (NPV) internal rate of return (IRR) and benefit:cost ratio. Importantly, the aim of the study was to identify key …

Patterns In Southeast Florida Coral Reef Community Composition, M. P. Sathe, David S. Gilliam, Richard E. Dodge, L. E. Fisher

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Southeast (SE) Florida coral reef system is the northern extension of the Florida reef tract. This high latitude system lies offshore a heavily populated and urbanized coast and therefore is affected by numerous environmental and anthropogenic stressors. Using annual monitoring data collected in 2004, the southeast lorida reef community was analyzed to investigate patterns in community composition in various habitat types. Data was collected by SCUBA divers who conducted a 30m2 belt transect survey at 24 sample sites offshore Broward County (SE), Florida. Sites ranged in depth range from six to 18 meters. The 24 sites occurred on five …

Long-Term Monitoring Of A High-Latitude Coral Reef System Off Southeast Florida, Usa: A Partnership Between Academia And Resource Management, David S. Gilliam, Kenneth Banks, Michael Callahan, Chantal Collier, Richard E. Dodge, Louis E. Fisher, Jennifer Wheaton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Significant coral reef community development exists along the eastern shelf of the United States from the Dry Tortugas through the Florida Keys (Monroe County) and Southeast (SE) Florida (Miami-Dade, Broward, Palm Beach, and Martin Counties). State and county resource managers have partnered with academia to monitor the health of the SE Florida reef system. Since 2000, more than 20 sites have been monitored annually offshore Broward County. Quantitative data includes stony coral species cover, colony size, density, and condition (bleaching, disease, etc.) and gorgonian and sponge density. The SE Florida Coral Reef Evaluation and Monitoring Project (SECREMP) was established in …

Winter 2008, Nsu Oceanographic Center

Currents

No abstract provided.

Additional Records Of Deep-Sea Fishes From Off Greater New England, Karsten E. Hartel, Christopher P. Kenaley, John K. Galbraith, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

Recent review of deep-sea fishes captured deeper than 200m off greater New England, from the Scotian Shelf at 44°N to the southern New England Shelf at about 38°N, documented 591 species. Subsequent trawling activity and reviews of deep-sea taxa occurring in the area have revealed that an additional 40 species in habit the deep sea off New England. Thirty-two of these new records were captured in the course of 44 bottom trawls and 94 mid-water trawls over or in the proximity of Bear Seamount (39°55'N, 67°30'W). Five of the 40 species have been described as new to science, at least …

Diverse Bacterial Pks Sequences Derived From Okadaic Acid-Producing Dinoflagellates, Roberto Perez, Li Liu, Jose V. Lopez, Tianying An, Kathleen S. Rein

Marine & Environmental Sciences Faculty Articles

Okadaic acid (OA) and the related dinophysistoxins are isolated from dinoflagellates of the genus Prorocentrum and Dinophysis. Bacteria of the Roseobacter group have been associated with okadaic acid producing dinoflagellates and have been previously implicated in OA production. Analysis of 16S rRNA libraries reveals that Roseobacter are the most abundant bacteria associated with OA producing dinoflagellates of the genus Prorocentrum and are not found in association with non-toxic dinoflagellates. While some polyketide synthase (PKS) genes form a highly supported Prorocentrum clade, most appear to be bacterial, but unrelated to Roseobacter or Alpha-Proteobacterial PKSs or those derived from other Alveolates …

The State Of Coral Reef Ecosystems Of Southeast Florida, Chantal Collier, Rob Ruzicka, Ken Banks, Luiz Barbieri, Jeff Beal, David Bingham, James Bohnsack, Sandra Brooke, Nancy Craig, Richard E. Dodge, Lou Fisher, Nick Gadbois, David S. Gilliam, Lisa Gregg, Todd Kellison, Vladimir Kosmynin, Brian Lapointe, Erin Mcdevitt, Janet Phipps, Nikki Poulos, John Proni, Patrick Quinn, Bernhard Riegl, Richard E. Spieler, Joanna Walczak, Brian K. Walker, Denise Warrick

Marine & Environmental Sciences Faculty Reports

The northern extension of the Florida reef tract and a complex of limestone ridges run parallel to the subtropical Atlantic coastline of southeast Florida. Spanning 170 km from the northern border of Biscayne National Park (BNP) in Miami-Dade County to the St. Lucie Inlet in Martin County, the reefs and hardbottom areas in this region support a rich and diverse biological community (Figure 5.1). Nearshore reef habitats in southeast Florida include hardbottom areas, patch reefs and worm reefs (Phragmatopoma spp.) exhibiting abundant octocoral, macroalgae, stony coral and sponge assemblages. Offshore, coral reef associated biotic assemblages occur on linear Holocene Acropora …

The Colonial Zoanthid Palythoa Caribaeorum: Population Dynamics On Southeast Florida Reefs, Joanna C. Walczak

HCNSO Student Theses and Dissertations

The colonial zoanthid Palythoa caribaeorum (Cnidaria, Zoanthidea) (Duchassaing and Michelotti 1861) is a major benthic component of most Caribbean reefs and is an extremely aggressive spatial competitor (Suchanek and Green 1981). This study looks at annual visits to 16 permanent monitoring sites over 3 reef designations (Inshore Ridge Complex, Middle Reef, and Outer Reef) in Broward County, Florida from 2002-2006. The data obtained in this study fills an informational void regarding the role of zoanthids in the southeast Florida reef benthic community. The study was conducted in two parts. Part One used digital imagery analysis to quantify the spatial cover …

Rates Of Carbonate Dissolution In Permeable Sediments Estimated From Porewater Profiles: The Role Of Sea Grasses, David J. Burdige, Richard C. Zimmerman, Xinping Hu

OES Faculty Publications

In this study we estimate sediment carbonate dissolution rates for sandy sea grass sediments on the Bahamas Bank using an inverse pore-water advection/diffusion/reaction model constrained by field observations. This model accounts for sea grass O₂ input to these sediments, and also parameterizes pore-water advection through these permeable sediments as a nonlocal exchange process. The resulting rates of carbonate dissolution are positively correlated with sea grass density, and are comparable with previous rate estimates for Florida Bay sediments. In contrast, the advective uptake of O₂ by these sediments decreased with increasing sea grass density. This suggests that the competing …

Co2 Sensitivity Of Southern Ocean Phytoplankton, Philippe D. Tortell, Christopher D. Payne, Yingyu Li, Scarlett Trimborn, Bjorn Rost, Walker O. Smith, Christina Riesselman, Robert B. Dunbar, Peter Sedwick, Giacomo R. Ditullio

OES Faculty Publications

The Southern Ocean exerts a strong impact on marine biogeochemical cycles and global air-sea CO₂ fluxes. Over the coming century, large increases in surface ocean CO₂ levels, combined with increased upper water column temps. and stratification, are expected to diminish Southern Ocean CO₂ uptake. These effects could be significantly modulated by concomitant CO₂-dependent changes in the region's biol. carbon pump. Here we show that CO₂ concentrations affect the physiology, growth and species composition. of phytoplankton assemblages in the Ross Sea, Antarctica. Field results from in situ sampling and ship-board incubation experiments demonstrate that inorganic …

The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju

OES Faculty Publications

The heterogeneous mixture of metabolic by-products termed lipofuscin (LF) or age pigments has long been known to accumulate in post mitotic cells with increasing age. In crustaceans several approaches have been developed over the years to track LF accumulation and provide a proxy for chronological age. Histological approaches have been traditionally used for LF determination of crustaceans (e.g. Sheehy et al. 1994, Mar Biol 121:237-245), but over the last decade extraction approaches for neural tissues have been introduced (Ju et al. 1999, Mar Ecol Prog Ser 185:171-179) and tested (Ju et al. 2001, Mar Ecol Prog Ser 224:197-205; 2003, Fish …

Interactions Between Changing Pco2, N2 Fixation, And Fe Limitation In The Marine Unicellular Cyanobacterium Crocosphaera, Fei-Xue Fu, Margaret R. Mulholland, Nathan S. Garcia, Aaron Beck, Mark E. Warner, Sergio A. Sañudo, David A. Hutchins

OES Faculty Publications

We examined the physiological responses of steady-state iron (Fe)-replete and Fe-limited cultures of the biogeochemically critical marine unicellular diazotrophic cyanobacterium Crocosphaera at glacial (19 Pa; 190 ppm), current (39 Pa; 380 ppm), and projected year 2100 (76 Pa; 750 ppm) CO₂ levels. Rates of N₂ and CO₂ fixation and growth increased in step with increasing partial pressure of CO₂ (pCO₂), but only under Fe- replete conditions. N₂) and carbon fixation rates at 75 Pa CO₂ were 1.4-1.8-fold and 1.2-2.0-fold higher, respectively, relative to those at present day and glacial pCO_{2 …}

Food Limitation In Larval Fish: Ontogenetic Variation In Feeding Scope And Its Potential Effect On Survival, Alexander B. Bochdansky, Peter Grønkjær, Pierre Pepin, William C. Leggett

OES Faculty Publications

We used the radiated shanny Ulvaria subbifurcataas a model species to explore the relative gut fullness from hatch to metamorphosis of wild larvae, and compared these values with those of laboratory-reared larvae fed at maximum rates. Ingestion rates of most wild larvae were above starvation levels but below the maximum feeding levels of laboratory-reared larvae. Twenty-six percent of freshly-hatched wild larvae and 11% of large, pre-settlement wild larvae had insufficient food in their stomach to satisfy metabolic requirements. These results, taken on their own, are consistent with the much hypothesized increased foraging performance and survival of larger larvae relative …

Ship Ballast Tanks: How Microbes Travel The World, Fred C. Dobbs

OES Faculty Publications

As the international shipping fleet travels the oceans, it carries with it hidden cargoes of microbes. Fred C. Dobbs explores the hazards posed and what can be done to counteract them.

Behavior Of An Escolar Lepidocybium Flavobrunneum In The Windward Passage As Determined By Popup Satellite Archival Tagging, David Kerstetter, P. H. Rice, Derke Snodgrass, Eric Prince

Marine & Environmental Sciences Faculty Articles

In June 2003, fisheries research was conducted in the Windward Passage using a chartered commercial pelagic longline vessel (Rice and Snodgrass 2003). This paper describes the habitat use by an escolar in this location tagged with a pop-up satellite archival tag (PSAT) that remained attached to the fish for 14 d. Data recovered from the PSAT were used to directly document diel vertical migration and ambient temperature range for the first time in a mesopelagic teleost.

A Modelling Study Of Developmental Stage And Environmental Variability Effects On Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, Gustav-Adolf Paffenhöfer

CCPO Publications

We used a stochastic Lagrangian model to study how behaviour contributes to copepod grazing success. The model simulates distinct foraging behaviours of Clausocalanus furcatus, Paracalanus aculeatus, and Oithona plumifera. Three sets of simulations were performed to investigate the effects of (a) prey-size preference; (b) variation in prey-size spectra; and (c) turbulence intensity on these species’ grazing rates. The size preference simulations demonstrate that, compared with copepodites, mature females have cell ingestion rates that are an order of magnitude lower, while carbon uptake is reduced by 35%. A prey spectrum that is skewed towards cells ,<6 >μm promotes copepodite …

Absorption Spectral Slopes And Slope Ratios As Indicators Of Molecular Weight, Source, And Photobleaching Of Chromophoric Dissolved Organic Matter, John R. Helms, Aron Stubbins, Jason D. Ritchie, Elizabeth C. Minor, David J. Kieber, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

A new approach for parameterizing dissolved organic matter ( DOM) ultraviolet-visible absorption spectra is presented. Two distinct spectral slope regions ( 275-295 nm and 350-400 nm) within log-transformed absorption spectra were used to compare DOM from contrasting water types, ranging from wetlands (Great Dismal Swamp and Suwannee River) to photobleached oceanic water ( Atlantic Ocean). On the basis of DOM size-fractionation studies ( ultrafiltration and gel filtration chromatography), the slope of the 275-295- nm region and the ratio of these slopes (S_R; 275-295- nm slope : 350-400- nm slope) were related to DOM molecular weight ( MW) and …

Otolith Chemistry Indicates Population Structuring By The Antarctic Circumpolar Current, Julian R. Ashford, Cynthia M. Jones, Eileen E. Hofmann, Inigo Everson, Carlos A. Moreno, Guy Duhamel, Richard Williams

CCPO Publications

Large-scale transport of seawater in ocean currents may generate spatially complex population structure through the advection of life stages of marine fish species. To test this, we compared the chemistry of otolith nuclei from Patagonian toothfish (Dissostichus eleginoides), presently managed as spatially discrete Populations corresponding to fishing management areas along the Antarctic Circumpolar Current (ACC), which transports water eastward around the Southern Ocean. The chemistry of otolith nuclei, laid down during early life, differed significantly between fishing areas Off South America and the Antarctic and between some Antarctic areas. However, we found significant discrepancies from expectation for a …

Rapid Evolution In Introduced Species, ‘Invasive Traits’ And Recipient Communities: Challenges For Predicting Invasive Potential, Kenneth D. Whitney, Christopher A. Gabler

School of Earth, Environmental, & Marine Sciences Faculty Publications

The damaging effects of invasive organisms have triggered the development of Invasive Species Predictive Schemes (ISPS). These schemes evaluate biological and historical characteristics of species and prioritize those that should be the focus of exclusion, quarantine, and/or control. However, it is not clear how commonly these schemes take microevolutionary considerations into account. We review the recent literature and find that rapid evolutionary changes are common during invasions. These evolutionary changes include rapid adaptation of invaders to new environments, effects of hybridization, and evolution in recipient communities. Strikingly, we document 38 species in which the specific traits commonly associated with invasive …

Department Of Fisheries Annual Report To Parliament 2007/08, Government Of Western Australia Department Of Fisheries

Department of Fisheries Annual Reports

In accordance with Section 61 of the Financial Management Act 2006 (FMA) and Section 263 of the Fish Resources Management Act 1994 (FRMA), | submit for your information the Annual Report to Parliament of the Department of Fisheries of Western Australia for the financial year ending 30 June 2008.

If there is a key word to describe the bulk of the Department of Fisheries' achievements during 2007/08, 'collaborative' fits very well.

Collaboration is, of course, essential in the work of a government agency that deals with a variety of clients, and must be accountable to the Parliament and public of …

An Analysis Of Demographic Disparities Associated With The Proposed U.S.-Mexico Border Fence In Cameron County, Texas, J. Gaines Wilson, Jude A. Benavides, E. Anthony Reisinger, Joseph Lemen, Zachary Hurwitz, Jessica Spangler, Karen Engle

School of Earth, Environmental, & Marine Sciences Faculty Publications

Introduction: The United States Department of Homeland Security (DHS) plans to install a fence along the U.S.-Mexico border by late December 2008. While much attention has been drawn to the environmental, social and political issues surrounding the fence, analysis of demographic data on the populations that will be directly affected has been limited. This paper utilizes geographic information systems (GIS) and U.S. Census Bureau data with the objective of understanding the underlying demographics in areas along the proposed Rio Grande Valley section of the border fence located in Cameron County, Texas.

Data and Methods: Demographic measures of income, education, …

Fisheries Research Report No. 160 - Development Of Biodiversity And Habitat Monitoring Systems For Key Trawl Fisheries In Western Australia., Mervi Kangas, S. Morrison, P. Unsworth, Eva K M Lai, I. Wright, Adrian W. Thomson

Fisheries Research Reports

Final FRDC report - Project 2002/038

The need for this project was identified through the ESD Risk Assessment workshops held for the Shark Bay and Exmouth Gulf trawl fisheries in May and October 2001. Bycatch issues in the Shark Bay and Exmouth fisheries were identified as a moderate risk through an Ecological Risk Assessment workshop. A better understanding of the faunal composition and habitat preferences of bycatch species in both trawled and untrawled areas has assisted in determining the level of risk to bycatch species. The project provided baseline data on biodiversity and variability of trawl bycatch on and off …

Histopathological Assessment And Comparison Sedimentation And Phosphate Stress On The Staghorn Coral, Acropora Cervicornis, Erin Christine Hodel

HCNSO Student Theses and Dissertations

Traditional coral reef monitoring efforts lack assessment of coral health at tissue and cellular levels. This thesis investigated tissue, cellular, and gross morphological responses of the Caribbean staghorn coral, Acropora cervicornis, to elevated sedimentation and phosphate using state-of-the-art histological techniques. Branch fragments of A. cervicornis were collected offshore Broward County, FL, acclimated for 12 weeks, subjected to a 4-week experimental period, and given a 1-week recovery period in laboratory aquaria. Treatments consisted of high doses (200 mg cm^-2 day^-1) of sedimentation (S), phosphate (4 μM) (P), and a combination of these two (S + P), in …

Fisheries Research Report No. 168 - Sustainable Development Of Barramundi Cage Aquaculture At Lake Argyle., Brett Glencross, S. Percival, B. Jones, J Hughes

Fisheries Research Reports

Final FRDC report and KSRP report - Project 2003/026

A preliminary sensory evaluation study was conducted to confirm the presence of a taint issue. Prior to this the issue was reliant on purchaser feedback and was not verified independently. To examine the issue of flavour taint a series of barramundi samples were collected from Lake Argyle (purged and unpurged), wild (estuarine) and marine farmed barramundi were assessed. No significant differences in flavour attributes and/or acceptability attributes were detected between the wild and farmed barramundi, provided the barramundi was either marine-farmed or purged. However, it was determined that a clear “muddy” …

Fish And Coral Reef Communities Of The Parque Nacional Sistema Arrecifal Veracruzano (Veracruz Coral Reef System National Park) Veracruz, Mexico: Preliminary Results, Marcos Alberto Rangel Avalos, Lance K. B. Jordan, Brian K. Walker, David S. Gilliam, Elvira Carvajal Hinojosa, Richard E. Spieler

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Effective resource management requires robust baseline datasets and efficient monitoring programs to identify and quantify temporal change. The Parque Nacional Sistema Arrecifal Veracruzano (Veracruz Coral Reef System National Park) encompasses a total of 52000ha including 23 coral reefs in two island groups separated by the mouth of the Jamapa River; one near the port of Veracruz, Mexico and one approximately 20km south near Punta Antón Lizardo. Both groups receive substantial fisheries pressure and other anthropogenic impacts. Using non-destructive, visual methods we surveyed fish and benthic assemblages at 18 sites, which included 10 individual coral reefs within the Park. For fishes, …

Fisheries Research Report No. 166 - Stock Enhancement Of Haliotis Laevigata In Western Australia - A Preliminary Assessment, Anthony M. Hart, Frank Fabris, Sabine Daume

Fisheries Research Reports

A preliminary assessment of stock enhancement of Haliotis laevigata (Greenlip abalone) in Western Australia was undertaken with the release of 6,000 abalone near Augusta in 2004. The objective of the project was to obtain quantitative data on the likelihood of enhancement, as an additional management tool to TACs and size-limits, being successful in natural habitats in Western Australia. Baseline surveys coupled with an assessment of growth and survival of released 1+ and 2 + animals were undertaken at 12 sites within Flinders Bay, Augusta. Overall survival was 19% for 1+ age abalone and 27% for 2+ animals after 9 months. …

Limb Regeneration After Multiple Autotomy And Coxae Removal In The Blue Crab Callinectes Sapidus, Jennifer Ambler

OES Theses and Dissertations

This study investigated limb regeneration in the juvenile blue crab, Callinectes sapidus, specifically the role of the coxa and pedal nerve innervation of the regenerative limb bud over time. The coxa is a leg segment that has been defined as the source of positional, cellular, and neuronal information needed for limb regeneration in brachyuran crabs. This study indicates that removal of coxae under regenerative and non-regenerative conditions did not deter limb regeneration. The coxa is not the exclusive location of limb regenerative information since limbs re-grew with normal positional and functional arrangement in 86% of crabs showing regeneration at removal …

Fisheries Research Report No. 163 - Spatial Scales Of Exploitation Among Populations Of Demersal Scalefish: Implications For Management. Part 1: Stock Status Of The Key Indicator Species For The Demersal Scalefish Fishery In The West Coast Bioregion., Department Of Fisheries, Western Australia

Fisheries Research Reports

Final FRDC report - Project 2003/052

The levels of exploitation on dhufish and pink snapper across the West Coast Bioregion and for baldchin groper at the Abrolhos Islands are above international benchmark standards. This indicates that these stocks are currently being overfished and are therefore likely to be being depleted to levels below those necessary to ensure their long-term sustainability. The current reliance of the dhufish catch on a single recruitment pulse together with the extremely truncated age distribution of pink snapper indicates that both these stocks are particularly vulnerable.

The West Coast Demersal Scalefish Fishery is a multi-species fishery …