Terrestrial and Aquatic Ecology Commons^™

Genetic Structure Of The Copperhead (Viperidae: Agkistrodon Contortrix Mokasen) At Its Most Northern Distribution, Brenna Aaren Levine

Graduate Theses and Dissertations

The focus of molecular studies in North American pitvipers has been on species that warrant conservation concern, such as Timber (Crotalus horridus) and Massasauga rattlesnakes (Sistrurus catenatus). Scant effort has been directed towards the molecular ecology of the Copperhead (Agkistrodon contortrix), other than to evaluate male reproduction in a laboratory setting and phylogenetic history. Thus, employing DNA-based molecular techniques to study the natural history of A. contortrix will broaden our knowledge of molecular ecology in North American pitvipers, and particularly in a non-threatened species that can serve as a surrogate for threatened and endangered …

Ecology And Flock-Following Behavior Of The Wedge-Billed Woodcreeper In Eastern Ecuador, Abigail Darrah

Graduate Theses and Dissertations

The wedge-billed woodcreeper (Glyphorynchus spirurus) is a common understory suboscine passerine of lowland Neotropical rainforests. It frequently joins mixed-species understory flocks but also regularly forages alone, and thus is an excellent model species on which to conduct comparative behavioral observations to examine the hypothesized costs and benefits of flock-following. Individuals exhibit variable flocking propensities (proportion of time spent with flocks), and thus observing the correlations between flocking propensity and physical and environmental factors can provide further insight into the importance of flock-following to the ecology of this species. Despite its abundance at many sites and its wide geographic range, surprisingly …

A New Commons: Considering Community-Based Co-Management For Sustainable Fisheries, Charlotte L. Dohrn

Pomona Senior Theses

Commercial fisheries on the West Coast are traditionally managed under large-scale management and conservation plans implemented by state and federal agencies. This scale of management can present obstacles for fishing communities. This thesis examines emerging cases of attempts to define and implement sustainable management of commercial fisheries under a community-based co-management model. In Port Orford, Sitka, San Diego and Santa Barbara, preliminary community-based co-management models are enabling fishing communities to pursue social sustainability through preserving access, participating in local science, and direct marketing for fish products. These communities are actively reshaping traditional models of conceptualizing and managing common-pool resources like …

Amphibian Occupancy And Functional Connectivity Of Restored Wetlands In The Missouri River Floodplain, Michelle L. Hellman

School of Natural Resources: Dissertations, Theses, and Student Research

Wetland decline may threaten many taxa including shorebirds, amphibians, and fish. As agencies increase restoration of wetland habitat, monitoring is crucial to inform the process. Permeable skin sensitive to water quality and biphasic life histories requiring both terrestrial and aquatic habitat make amphibians good indicators of wetland health. I modeled amphibian occupancy in restored Missouri River bends to determine habitat characteristics associated with the presence of amphibians.

Occupancy modeling acknowledges imperfect detection and allows the inclusion of detection covariates. To assess detection I examined two methods currently used to assess anuran occupancy in wetlands, aural anuran surveys and tadpole dip-netting. …

The Affect Of Low Tide On The Digestion Of Balanus Glandula, The Acorn Barnacle., Jesse Osborn

Scripps Senior Theses

The rocky intertidal zone, experiencing fully marine and fully terrestrial conditions, has become increasingly investigated as a model ecosystem for studying the future implications of climate change. The barnacle, Balanus glandula, a common rocky intertidal inhabitant, plays an important role as a key prey item for many organisms. Low tide can be particularly challenging for barnacles as they are marine organisms subjected to the abiotic conditions of a terrestrial environment. The most stressful of these are increased temperature and decreased oxygen availability. This study aimed to investigate how low tide impacts the energy budget, specifically the digestion, of B. …

Comparing Trophic Level Position Of Invertebrates In Fish And Fishless Lakes In Arctic Alaska, Katie Fisher

Undergraduate Honors Capstone Projects

Arctic lakes are likely very sensitive to the effects of climate change. Thus it is important to understand the current food web dynamics and energy flow within these lakes, to better understand how they will change in the future due to the effects of a rapidly changing climate. In order to contribute to this understanding, my project consists of an analysis of stable isotopes of carbon (delta 13 C) and nitrogen (delta 15 N) from invertebrates among fish and fishless lakes in arctic Alaska, to compare their trophic level positions and primary energetic sources. I collected pelagic invertebrates from 5 …

Unexpected Phylogenetic Positions Of The Genera Rupirana And Crossodactylodes Reveal Insights Into The Biogeography And Reproductive Evolution Of Leptodactylid Frogs, Antoine Foquet, Boris Leonardo Blotto, Maximiliano Manuel Maronna, Vanessa Kruth Verdade, Flora Acuña Juncá, Rafael O. De Sá, Miguel Trefaut Rodrigues

Biology Faculty Publications

Despite major progress in deciphering the amphibian tree of life by molecular phylogenetics, we identified two questions remaining to be answered regarding relationships within Hyloidea, the clade of South American origin that comprises most extant anuran diversity. A few genera like Rupirana and Crossodactylodes have enigmatic phylogenetic positions, and relationships among major lineages within some families like Leptodactylidae remain ambiguous. To resolve these specific questions we used two approaches (1) a complete matrix approach representing >6.6 kb, including most major Hyloidea lineages (61 terminals) combining different methods of phylogenetic reconstruction and measures of node support; and (2) a supermatrix approach …

Dispersal Ecology Of Desert Mosses Along Gradients Of Elevation, Wildfire Disturbance And Local Niche, Robert Joseph Smith

UNLV Theses, Dissertations, Professional Papers, and Capstones

Much of the variation in plant communities can be explained by the dispersal of individuals across landscapes, an ecological process that contributes to clinal variation, post-disturbance recovery and habitat occupancy. The role of dispersal is of particular concern for Mojave Desert plant communities that may not be able to tolerate recent departures from historical fire regimes. The aim of this thesis was to infer how dispersal is reflected by patterns of diversity in disturbed and undisturbed bryophyte communities in the Spring Mountains of southern Nevada. Chapter 2 presents an examination of sub-surface bryophyte communities (propagule "soil-banks") along a 1400 m …

Litter Conditioning Is Differentially Affected By Leaf Species, Phosphorus Enrichment, And Light Availability, Erin E. Scott

Graduate Theses and Dissertations

Anthropogenic enrichment of nitrogen and phosphorus is one of the most pervasive and detrimental threats to aquatic ecosystems worldwide. In streams that rely on allochthonous basal food resources, such as leaves, nutrient pollution can result in altered food quality and decreased carbon (C) standing stocks. However, the magnitude and mechanisms of this change in quality are poorly understood. Laboratory microcosm studies were conducted to 1) quantify the response of litter C:P to a gradient of phosphorus (P) enrichment (0, 0.05, and 0.5 mg SRP/L) across leaf species with variable levels of degradability (sugar maple and oak), and 2) quantify the …

Enhancing Coastal Resilience: Perspectives On Valuing Ri Coastal Lands, Kyle Nyskohus

Honors Projects in Science and Technology

This paper discusses coastal resilience as an organizing framework for future policymaking, coastal planning, and insurance decisions, and explores the different perspectives of the value of ecosystems held by various stakeholders in Rhode Island’s coastal communities. A grounded theory approach was used in an effort to abstract general insights from the substantive but isolated areas of coastal management and economics. Special attention is given to the perspectives of municipal decision makers, the National Flood Insurance Program, natural economists, and real estate developers. We have (1) conducted a statistical analysis of environmental spending of RI towns, (2) identified key models for …

Conservation Status And Habitat Preference Of The Longhead Darter (Percina Macrocephala) (Cope) In Kinniconick Creek, Lewis County, Kentucky, Joshua Schiering

Morehead State Theses and Dissertations

A thesis presented to the faculty of the College of Science and Technology at Morehead State University in partial fulfillment of the requirements for the Degree of Master of Science in Biology by Joshua Schiering on April 15, 2013.

Marine Turtle Health Assessment And Aquarium Suitability: Uzi Island, Zanzibar, Olivia “Warda” Crane

Independent Study Project (ISP) Collection

This study assessed the health of the marine turtles in the aquarium on Uzi Island. Health evaluations of each turtle included size, eating habit, and physical abnormalities. Behaviorally the sea turtles were observed at two different time periods multiple times. Results were compared to research on wild sea turtles. The conditions of the aquarium were evaluated for water quality and holding capacity. The water temperature, pH, and salinity levels were tested to assess the water quality. The results showed that the overall health of the sea turtles were positive from the normal activities and few abnormalities. The overall aquarium conditions …

Comparison Study Of Fish Species Richness Of Two Mangrove Forests On Misali Island: Eastern (Extractive) V. Western (Core) Mangrove Forests, Spencer M. Mallette

Independent Study Project (ISP) Collection

The fish species richness of two mangrove forests adjacent to non-extractive and extractive zones, respectively, was investigated on Misali Island, Tanzania. Observations were done at each site for seven samplings, recording the different species observed upon each visit. A general list of species found in the intertidal area was also composed to get an idea of what species use this region as well. A total of twenty-four species were observed between the two sites, leading to a similarity index of 0.29, representing very little similarity between the two stands. Two different diversity indices (Shannon-Wiener and Simpson’s) also supported the hypothesis …

Friends Or Foes: Interpreting The Relationship Between Two Synoptic Small Mammals In Southeastern Virginia, The Hispid Cotton Rat (Sigmodon Hispidus) And Eastern Harvest Mouse (Reithrodontomys Humulis), Sarah A. Crawford

Biological Sciences Theses & Dissertations

Relatively little is known about the relationship between the hispid cotton rat (Sigmodon hispidus) and the eastern harvest mouse (Reithrodontomys humulis). Literature on these two syntopic genera in other areas of the United States suggests that competition may exist; however, both species seem to be greatly affected by environmental changes, making it difficult to draw any definite conclusions. Live trapping and microhabitat data collected from 2 old fields in Chesapeake, Virginia over a 9-year period were used to assess the biotic and abiotic influences on space use by these two species. Each I-ha plot consisted of 2 live traps placed …

Building Upon Common-Pool Resource Theory To Explore Success In Transitioning Water Management Institutions, Christina M. Hoffman

School of Natural Resources: Dissertations, Theses, and Student Research

Nebraska, like many regions around the world, is faced with the challenge of adapting to a new era in water management. Increasing demands for water resources, mounting concerns over threatened and endangered species, and obligations to abide by interstate water allocation agreements have motivated Nebraska to revisit traditional water management approaches. However, although Nebraska’s water management institutions have undergone much change, little research exists on the influence these changes have had on the ability of water institutions to successfully manage water allocations. This research (1) qualitatively explores the perspectives and experiences of stakeholders in the overappropriated region of the Platte …

The Influence Of Sea-Water Inundation On Coupled Iron And Sulfur Cycling In A Coastal Freshwater Wetland, Valerie Anne Schoepfer

School of Natural Resources: Dissertations, Theses, and Student Research

Coastal freshwater wetland chemistry is rapidly changing due to increased frequency of saltwater inundation, a consequence of global change. Seasonal salt water inundation introduces sulfate, which biologically reduces to sulfide via microbial metabolism. Sulfide binds with reduced iron producing iron sulfide (FeS), recognizable in wetland soils by its characteristic black color. The objective of this study is to document rates of iron and sulfate reduction, as well as product formation (acid volatile and chromium reducible sulfide, AVS and CRS) in a coastal freshwater wetland undergoing seasonal salt water inundation. Understanding iron and sulfur cycling, as well as their reduction products …

The Advertisement Calls And Distribution Of Two Sympatric Species Of Chiasmocleis (Méhely 1904) (Anura, Microhylidae, Gastrophryninae) From The Atlantic Forest, Maruicio C. Forlani, Caio Vinicius De Mira Mendes, Iuri Ribeiro Dias, Danilo Silva Ruas, João Filipe Riva Tonini, Rafael O. De Sá

Biology Faculty Publications

The advertisement calls of Chiasmocleis cordeiroi and C. crucis are described for populations from the municipalities of Igrapiúna and Camacan, respectively, state of Bahia, Brazil. Both calls consist of multipulsed notes produced in series. Differences between the two calls are: dominant frequency, higher in C. cordeiroi (range 4500-4898 Hz; C. crucis range 4069-4435 Hz); note rate, higher in C. cordeiroi (range 6.20--7.46 s/note; C. crucis range 5.17-5.59 s/note); pulse rate, higher in C. cordeiroi (151.82-194.83 s/note; C. crucis range 125.30- 142.12 s/note); and the structure of the modulation patterns of the notes. Moreover, the advertisement calls of C. crucis and …

The Advertisement Calls And Distribution Of Two Sympatric Species Of Chiasmocleis (Méhely 1904) (Anura, Microhylidae, Gastrophryninae) From The Atlantic Forest, Mauricio C. Florani, Caio Vinicus De Mira Mendes, Iuri Ribeiro Dias, Danilo Silva Ruas, João Fillipe Riva Tonini, Rafael O. De Sá

Biology Faculty Publications

The advertisement calls of Chiasmocleis cordeiroi and C. crucis are described for populations from the municipalities of Igrapiúna and Camacan, respectively, state of Bahia, Brazil. Both calls consist of multipulsed notes produced in series. Differences between the two calls are: dominant frequency, higher in C. cordeiroi (range 4500–4898 Hz; C. crucis range 4069–4435 Hz); note rate, higher in C. cordeiroi (range 6.20–7.46 s/note; C. crucis range 5.17–5.59 s/note); pulse rate, higher in C. cordeiroi (151.82–194.83 s/note; C. crucis range 125.30– 142.12 s/note); and the structure of the modulation patterns of the notes. Moreover, the advertisement calls of C. crucis and …

Comparative Phylogeography Of The Emperor Snappers Lethrinus Lentjan And Lethrinus Harak (Lethrinidae: Percoidei) In The Coral Triangle, Andrew B. Hines

Biological Sciences Theses & Dissertations

Many questions remain regarding the origins of the well-known peak in marine biodiversity found in the Coral Triangle. Barriers to gene flow may promote lineage diversification and provide the potential for speciation contributing to the high biodiversity in this area. Population structure was examined in two species of Emperor Snappers (Lethrinidae), Lethrinus harak and Lethrinus lentjan. These species were selected because they share similar life-history traits and geographic distributions, but differ in their habitat preferences. Specimens were collected from within the Coral Triangle as well as other localities across the Indo-Pacific. To investigate phylogeographic patterns and structure a hypervariable …

Basin Isolation And Oceanographic Features Influencing Lineage Divergence In The Humbug Damselfish (Dascyllus Aruanus) In The Coral Triangle, Jeremy M. Raynal

Biological Sciences Theses & Dissertations

The Coral Triangle (CT) is a hotspot for marine species diversity as well as for intraspecific genetic diversity. Here, nuclear RAG2 and mitochondrial D-Loop genes were used to identify deep genetic divergence among Dascyllus aruanus (Linnaeus, 1758) populations across relatively short scales within the CT. Mitochondrial clades different by greater than 20 mutational steps were geographically isolated from one another across the distance between Java and the Lesser Sunda Islands, and also east and west across the Philippines. Evidence for population structure in the Sulu Sea and at the Lesser Sunda Islands is also identified. The results suggest that the …

Evaluating The Effects Of Road Crossing Structures On Stream-Associated Amphibians In The Wilson River Watershed, Tillamook State Forest, Oregon, Sara Erin Twitchell

Dissertations and Theses

As replacement and removal of undersized culverts gains momentum as an effective technique for restoring natural stream flows and removing fish passage barriers, it is important to evaluate the benefits of these efforts on the in-stream and adjacent riparian habitat for other species of potential concern. This study compares stream-associated amphibian (SAA) occurrence in streams adjacent to different road crossing structures on unpaved forest roads in the Wilson River watershed located within the Tillamook State Forest, Oregon. Surveys were conducted at road crossing structures for three taxa of SAA; Pacific giant salamander (Dicamptodon tenebrosus), coastal tailed frog (Ascaphus truei), and …

Persons As Plants: Ecopsychology And The Return To The Dream Of Nature, Monica Gagliano

Landscapes: the Journal of the International Centre for Landscape and Language

Abstract. In this article, I examine human-plant perceptions and interactions in terms of developing a new perspective on the perception and the actions of people towards plants. By combining my scientific understanding of the biological world and my own experiences working with plant shamans, storytellers and mystics from around the world, I engage with the idea that the hierarchical structure by which Western science defines the variety of life forms as ‘primitive’ or ‘more evolved’ is at the root of the current environmental crisis and I argue that the solution to it rests in a change of this very perspective.

A Multispecies Avian Abundance Analysis In Riparian And Oak Woodland Habitats On The California Central Coast, Jacy Hyde

Biological Sciences

I investigated the abundance and diversity of riparian and oak woodland birds in a section of the Los Padres National Forest in Coastal Central California. Point counts were conducted in Oak Woodland and Riparian habitats during the summer of 2012. Point counts were replicated in time (2x) and space (25 replicates). The data were analyzed using Program Distance to correct for differing detection probabilities between species and habitat types. The two habitat types showed no significant difference in species richness. For most species, there was no difference in density between riparian and oak woodland habitats. However, the two species with …

Loggerhead Shrike (Lanius Ludovicianus): Species Conservation Assessment, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The primary goal in the development of at-risk species conservation assessments is to compile biological and ecological information that may assist conservation practitioners in making decisions regarding the conservation of species of interest. The Nebraska Natural Legacy Project recognizes the Loggerhead Shrike (Lanius ludovicianus) as a Tier I at-risk species. Here, I provide some general management recommendations regarding Loggerhead Shrikes. However, conservation practitioners will need to use professional judgment for specific management decisions based on objectives, location, and site-specific conditions. This resource provides available knowledge of Loggerhead Shrikes that may aid in the decision-making process or in identifying research needs …

Bulk Partitioning The Growing Season Net Ecosystem Exchange Of Co2 In Siberian Tundra Reveals The Seasonality Of Its Carbon Sequestration Strength, Benjamin R. K. Runkle, T. Sachs, C. Wille, E.-M. Pfeiffer, L. Kutzbach

Biological and Agricultural Engineering Faculty Publications and Presentations

This paper evaluates the relative contribution of light and temperature on net ecosystem CO2 uptake during the 2006 growing season in a polygonal tundra ecosystem in the Lena River Delta in Northern Siberia (72°22´ N, 126°30´ E). The occurrence and frequency of warm periods may be an important determinant of the magnitude of the ecosystem's carbon sink function, as they drive temperature-induced changes in respiration. Hot spells during the early portion of the growing season, when the photosynthetic apparatus of vascular plants is not fully developed, are shown to be more influential in creating positive mid-day surface-to-atmosphere net ecosystem CO2 …

Birds Of The Central Platte River Valley And Adjacent Counties, Mary Bomberger Brown, Paul A. Johnsgard

Zea E-Books Collection

The central Platte River Valley region of Nebraska is described ecologically, and defined as encompassing 11 counties and nearly 10,000 square miles, and extending about 120 miles from the western edge of Lincoln County to the eastern edge of Merrick County. At its center is the Platte River, the historic spring staging area for Sandhill and Whooping cranes, five species of geese, and millions of waterfowl and water-dependent birds, in addition to providing the breeding habitats for more than 100 other bird species. Collectively, at least 373 bird species have been reported from the Central Platte Valley, making it the …

Rapid Change In Shallow Water Fish Species Composition In An Historically Stable Antarctic Environment, Bradley A. Buckley

Biology Faculty Publications and Presentations

McMurdo Sound, Antarctica, is home to a unique marine biota with an ecology that has evolved in this frigid environment over millions of years. The region is one of the least disturbed, and possibly the last pristine, marine ecosystem on Earth. Here, the results of three seasons of fishing in the shallow nearshore waters of McMurdo Sound are reported. A shift in the composition of small fish species at one site, Inaccessible Island, has been observed in just five years. The shift in shallow water species composition occurred during a period that followed the maturation of a commercial fishery for …

The Advertisement Call Of The Poorly Known Leptodactylus Tapiti (Anura, Leptodactylidae), Reuber Albuquerque Brandão, Guilherme Fajardo Roldão Álvares, Rafael O. De Sá

Biology Faculty Publications

The genus Leptodactylus consists of approximately 80 species distributed in four nominal groups (Frost 2011). The fuscus group harbors approximately 30 small species with terrestrial nests, deposited in male built burrows on soft soils. Leptodactylus tapiti Sazima & Bokermann 1978 was described from Veadeiros, currently Alto Paraíso municipality, Goiás State, Brazil. The species is restricted to the region of Chapada dos Veadeiros (Frost 2011), where it occurs in areas of water-saturated soils associated with open fields (Sazima & Bokermann 1978). Since its original description, nothing was published about the species, and its advertisement call remains unknown. Herein, we describe its …

Proximal Sensing As A Means Of Characterizing Phragmites Australis, Travis Yeik

Department of Geography: Dissertations, Theses, and Student Research

Phragmites australis is an invasive wetland weed found throughout much of the United States. Documenting and mapping the growth and spread of this emergent macrophyte can be an important step in developing and implementing successful management strategies. Characterizing the phenology of a vegetation species with a sensor capable of hyperspectral resolution, positioned at close proximity to the canopy of interest, is often a first step necessary for understanding the basic species-specific reflectance patterns, and for quantifying the manner in which light interacts with the plants comprising particular communities. Spectral data over a P. australis canopy were collected during 22 …

Continuous, Pulsed And Disrupted Nutrient Subsidy Effects On Ecosystem Productivity, Stability, And Energy Flow, Michael J. Weber, Michael L. Brown

Natural Resource Management Faculty Publications

Resource pulses and subsidies can supply ecosystems with an important source of nutrients that supports additional productivity at multiple trophic levels. Common carp Cyprinus carpio provide ecosystems with a continuous nutrient subsidy through bioturbation and excretion but may also initiate a nutrient pulse through carcass decomposition. We examined how continuous (common carp foraging and excretion), pulsed (carcass decomposition) and disrupted (carp introduced and then removed) nutrient subsidies differed in their ability to alter nutrient availability, ecosystem productivity and stability and energy flow. Nitrogen and phosphorus availability and primary production were highest in pulsed, intermediate in continuous and lowest for disrupted …