Population Biology Commons^™

Investigation Into The Genetic Provenance Of Three Rare Plants With East-West Disjunction Patterns In Pennsylvania., Scott Schuette, Christopher T. Martine

Other Faculty Research and Publications

Rare plant conservation relies on an understanding of the natural history, biology and ecology, and real and potential threats to their populations to inform state regulations that serve to protect the species from extirpation. This work often involves extensive field surveys over several years to determine population sizes and whether those populations are seeing reductions in number of individuals necessary to maintain the genetic diversity within and between those populations. Species and populations with high genetic diversity are better equipped to withstand sudden changes to their habitats that derive from land use changes and changing climate. There are a variety …

A Preliminary Study On The Small Population Paradigm And Nesting Biology Of Rose-Ringed Parakeets (Psittacula Krameri) In Gujar Khan, Pakistan, Muhammad Bilal, Muhammad Huzaifa Zahid, Khalid Mahmood, Abdullah Ibrahim, Ali Hasnain Mosvi, Amir Naseer, Sadia Munir

Journal of Bioresource Management

Rose-ringed parakeet (P. krameri) is commonly found native psittacid in Pakistan. It is most popular companion bird in Pakistan. It is an unprotected species as per The Punjab Wildlife Act, 1974. The objectives of the present study were to study its population paradigm and basic nesting biology in the Gujar Khan, Punjab, Pakistan. Previously, no studies were carried out to assess its live and vacant nest cavities, nesting site, nest height, cavity position on substrate, and potential roosts in the area. Moreover, this study also assesses the potential threats and factors in this area and conservation of the …

Tolerance Of Bearded Vultures To Human Activities: Response To Comor Et Al. (2019), Olivier Duriez, Antoni Margalida, Luc Albert, Beatriz Arroyo, Virginie Couanon, Hélène Loustau, Martine Razin, Jean-Baptiste Mihoub

Human–Wildlife Interactions

The bearded vulture (Gypaetus barbatus) is listed as vulnerable in Europe on the International Union for Conservation of Nature Red List because of population declines over multiple generations. Vulture population declines have been attributed to shooting, use of toxicants, and changes in land use, which have resulted in habitat degradation and increased anthropogenic disturbances. Concomitantly, conservation authorities have restricted practices deemed harmful to the species and have established protection buffers around occupied vulture breeding sites to mitigate the impacts of anthropogenic disturbances on breeding success. Comor et al. (2019) compared bearded vulture breeding success over 6 years within …

Fish And Macroinvertebrate Response To Restoration And Conservation Efforts, Madison C. Cogar

Graduate Theses/Dissertations

Fish and macroinvertebrate response to restoration and conservation efforts varies in regards to the size and structure of the system (e.g. headwater streams in WV versus large rivers such as the Mississippi River). This project reviews fish and macroinvertebrate rebound in treated acid mine drainage (AMD) streams in WV as well as macroinvertebrate drift patterns in the Mississippi and Missouri Rivers. AMD is a product of a chemical reaction resulting in an acidic water outflow from mining sites, which may harm aquatic life. As a response, passive AMD treatment systems have been installed. I tested the effectiveness of remediation by …

Population Structure Of A Federally Endangered Plant (Astragalus Jaegerianus Munz, Fabaceae) With Limited Range Using Microsatellites, Sueann Neal

Electronic Theses, Projects, and Dissertations

Studies on population genetics examine the relationship and effects of population structure, migration, gene flow and demographic history, and are therefore important in the conservation of endangered species. Astragalus jaegerianus, a critically federally endangered species found in a geographically restricted range is investigated to determine population structure and genetic variation. Previous research on A. jaegerianus focused on DNA sequence data for cpDNA and nrDNA showed no variation. Further research on A. jaegerianus utilizing AFLP’s on the whole genome indicated substantial gene diversity and population structure consistent with geographically widespread species. AFLP research is a cost-effective process to identify levels …

Ecology And Evolution, David J. Lohman

Open Educational Resources

Introduction to the basic principles of ecology and evolutionary biology emphasizing quantitative approaches and hypothesis testing. Scientific reasoning, computer literacy, and writing skills are developed in the laboratory.

Assessment Of Wild Ring-Tailed Lemur (Lemur Catta) Populations In Southwestern Madagascar With Implications For The Illegal Pet Trade, Samantha D. Calkins

Theses and Dissertations

Accurate population estimates are critical to inform conservation management of species. Incomplete sampling can lead to population underestimates and lacking conservation efforts. Population surveys are important for assessing human and animal welfare to allow for targeted conservation action. Recent ring-tailed lemur (Lemur catta) surveys have led researchers to conclude that L. catta populations are crashing. This has generated much attention and alarm, but may also be based on incomplete information. To better understand population dynamics, more thorough sampling is needed. Here, we survey five such sites to reassess the presence and abundance of L. catta in these locations. …

Impact Of The Human Footprint On Anthropogenic Mortality Of North American Reptiles, Jacob E. Hill, Travis L. Devault, Jerrold L. Belant

United States Department of Agriculture Wildlife Services: Staff Publications

Human activities frequently result in reptile mortality, but how direct anthropogenic mortality compares to natural morality has not been thoroughly investigated. There has also been a limited examination of how anthropogenic reptile mortality changes as a function of the human footprint. We conducted a synthesis of causespecific North American reptile mortality studies based on telemetry, documenting 550 mortalities of known cause among 2461 monitored individuals in 57 studies. Overall 78% of mortality was the result of direct natural causes, whereas 22% was directly caused by humans. The single largest source of mortality was predation, accounting for 62% of mortality overall. …

Geographic Population Structure And Taxonomic Identity Of Rhinichthys Osculus, The Santa Ana Speckled Dace, As Elucidated By Nuclear Dna Intron Sequencing, Liane Raynette Greaver

Electronic Theses, Projects, and Dissertations

Rhinichthys osculus (Cyprinidae), the speckled dace, is the most widely distributed freshwater fish in the western United States. The southern California populations of R. osculus are identified as the Santa Ana speckled dace (SASD), though the SASD has not yet been formally recognized as a distinct taxon. Current mtDNA analysis performed in the Metcalf Lab has shown a reciprocally monophyletic relationship among three California regions; southern, central coast, and Owens Valley. Similarly, microsatellite genotyping has shown significant levels of geographic population structure. The purpose of this study was to provide nuclear DNA sequence data to determine the taxonomic status of …

Mixing It Up: The Impact Of Episodic Introgression On The Evolution Of High-Latitude Mesocarnivores, Jocelyn P. Colella

Biology ETDs

At high latitudes, climatic oscillations have triggered repeated episodes of organismal divergence by geographically isolating populations. For terrestrial species, extended isolation in glacial refugia – ice-free regions that enable terrestrial species persistence through glacial maxima – is hypothesized to stimulate allopatric divergence. Alternatively, upon glacial recession, divergent populations expanded from independent glacial refugia and often contacted other diverging populations. In the absence of reproductive isolating mechanisms, this biogeographic process may trigger hybridization and ultimately, gene flow between divergent taxa. My dissertation research aims to understand how these episodic periods of isolation and contact have impacted the evolution of high latitude …

Assessing Populations Of Eastern Brook Trout (Salvelinus Fontinalis) Above And Below Waterfalls In Mountain Streams Of Virginia, Hannah Eisemann Macmillan

Masters Theses, 2010-2019

Anthropogenically driven factors, such as increasing temperature and sediment in valley streams, acidification of mountain streams, and the introduction of non-native trout, are restricting habitat suitable for healthy populations of eastern brook trout (Salvelinus fontinalis) throughout their native Appalachian range. Brook trout are important as predators of insects in mountain streams and as a favorite of anglers. It is crucial that remaining populations in sustainable habitats be identified and preserved. Waterfalls are geologic knickpoints preventing base-level lowering that create unique, stable landscapes above them, which may alleviate the temperature-productivity/acidity “habitat squeeze” for populations of brook trout and could …

Biogeography Of Endemic Dragonflies Of The Ozark-Ouachita Interior Highlands, Wade Alexander Boys

Graduate Theses and Dissertations

A common pattern across many taxonomic groups is that relatively few species are widespread while the majority are restricted in their geographic ranges. Such species distributions are used to inform conservation status, which poses unique challenges for rare or cryptic species. Further, priority status is often designated within geopolitical boundaries, which may include only a portion of a species range. This, coupled with lack of distributional data, has resulted in species being designated as apparently rare throughout some portions of their range, which may not accurately reflect their overall conservation need. The Interior Highlands region of the central United States …

Protecting Biodiversity In British Columbia: Recommendations For Developing Species At Risk Legislation, Alana R. Westwood, Sarah P. Otto, Arne Mooers, Chris Darimont, Karen E. Hodges, Chris Johnson, Brian M. Starzomski, Cole Burton, Kai M. A. Chan, Marco Festa-Bianchet, Shaun Fluker, Sumeet Gulati, Aerin L. Jacob, Dan Kraus, Tara G. Martin, Wendy J. Palen, John D. Reynolds, Jeannette Whitton

Threatened and Endangered Animal Populations Collection

British Columbia has the greatest biological diversity of any province or territory in Canada. Yet increasing numbers of species in British Columbia are threatened with extinction. The current patchwork of provincial laws and regulations has not effectively prevented species declines. Recently, the Provincial Government has committed to enacting an endangered species law. Drawing upon our scientific and legal expertise, we offer recommendations for key features of endangered species legislation that build upon strengths and avoid weaknesses observed elsewhere. We recommend striking an independent Oversight Committee to provide recommendations about listing species, organize Recovery Teams, and monitor the efficacy of actions …

Cause‐Specific Mortality Of The World’S Terrestrial Vertebrates, Jacob E. Hill, Travis L. Devault, Jerrold L. Belant

United States Department of Agriculture Wildlife Services: Staff Publications

Aim: Vertebrates are declining worldwide, yet a comprehensive examination of the sources of mortality is lacking. We conducted a global synthesis of terrestrial vertebrate cause‐specific mortality to compare the sources of mortality across taxa and determine predictors of susceptibility to these sources of mortality.

Location: Worldwide.

Time period: 1970–2018.

Major taxa studied: Mammals, birds, reptiles and amphibians.

Methods: We searched for studies that used telemetry to determine the cause of death of terrestrial vertebrates. We determined whether each mortality was caused by anthropogenic or natural sources and further classified mortalities within these two categories (e.g. harvest, vehicle collision and predation). …

Mind The Gap: Experimental Tests To Improve Efficacy Of Fladry For Nonlethal Management Of Coyotes, Julie K. Young, John Draper, Stewart Breck

United States Department of Agriculture Wildlife Services: Staff Publications

Coyotes (Canis latrans) are the top predator of livestock in the contiguous United States. Developing more effective nonlethal tools to prevent coyote depredation will facilitate coexistence between livestock producers and coyotes. Fladry is a nonlethal deterrent designed to defend livestock by creating a visual barrier to wolves (C. lupus). Fladry may also be effective with coyotes, but large gap spacing between flags may reduce its efficacy. To address this issue, we performed 2 experiments on captive coyotes using fladry modified to reduce gap spacing at the U.S. Department of Agriculture, Predator Research Facility in Millville, Utah, USA, during 2015–2016 and …

Understanding The Impacts Of Current And Future Environmental Variation On Central African Amphibian Biodiversity, Courtney A. Miller

LSU New Orleans Theses and Dissertations

Global climate change is projected to impact multiple levels of biodiversity by imposing strong selection pressures on existing populations, triggering shifts in species distributions, and reorganizing entire communities. The Lower Guineo-Congolian region in central Africa, a reservoir for amphibian diversity, is predicted to be severely affected by future climate change through rising temperatures and greater variability in rainfall. Geospatial modelling can be used to assess how environmental variation shapes patterns of biological variation – from the genomic to the community level – and use these associations to predict patterns of biological change across space and time. The overall goal of …

Plants And Their Uses; How Communities Of Tolipir, Pakistan Get Benefit, Abu Ul Hassan Faiz, Mehboob Ul Hassan, Fida Muhammad Khan, Lariab Zahra Faiz, Hina Farooq

Journal of Bioresource Management

The present study documented ethnobotanical uses of 156 plant species belonged to 93 genera and 51 families listed from five villages of Tolipir landscape (Ali Sojhal, Kanchi Kot, Khori Chana, Kahoo Kot and Noor Kot villages). Study revealed that most of the species were used medicinally, leaves found to be the most frequently used part, for preparation of indigenous recipes and fodder purpose. The current study empirically contributes a huge chunk of ethnobotanical knowledge and depicts its strong connection with indigenous traditions. It is an urgent need to document indigenous uses of plants for future domestication.

Integrating Species Traits Into Species Pools, Marko J. Spasojevic, Christopher P. Catano, Joseph A. Lamanna

Biology Faculty Research

Despite decades of research on the species‐pool concept and the recent explosion of interest in trait‐based frameworks in ecology and biogeography, surprisingly little is known about how spatial and temporal changes in species‐pool functional diversity (SPFD) influence biodiversity and the processes underlying community assembly. Current trait‐based frameworks focus primarily on community assembly from a static regional species pool, without considering how spatial or temporal variation in SPFD alters the relative importance of deterministic and stochastic assembly processes. Likewise, species‐pool concepts primarily focus on how the number of species in the species pool influences local biodiversity. However, species pools with similar …

Genetic Estimates Of The Number Of Breeding Adults In Alligator Gar From The Choke Canyon Reservoir, Texas, E. Blayne Newsome

Honors Theses

Alligator gar were historically found across the coastal drainages of the Gulf of Mexico and up into the Mississippi River basin. However, their populations are experiencing decline in many portions of their range. Texas seems to have large populations of alligator gar, but state resource officers are seeking to better understand its biology so as to provide appropriate management recommendations to maintain the recreational fishery. In this study, I used genetic techniques to examine a cohort of 144 juvenile alligator gar collected in 2016 in the Choke Canyon Reservoir. By estimating the effective number of breeders and number of spawning …

Using Unmanned Aerial Vehicle Technology To Enhance Conservation Biology Research, Ann Briggs

Honors Program: Senior Projects (Public)

This study examined the most effective ways to utilize unmanned aerial vehicles (UAV) for wildlife conservation. More specifically, a UAV platform was created that can perform multiple data collection tasks by utilizing interchangeable modules. The prototype produced in this study has the capability to perform many tasks through the use of interchangeable modules. These tasks include, but are not limited to aerial surveys and collection of biological samples. This innovative technology will provide invaluable assistance to conservation efforts by reducing research and subject injury or death while maximizing efficiency. The modular design of the prototype was developed for retail to …

Effects Of Rearing Environment On Behavior Of Captive-Reared Whooping Cranes, Christy L. Sadowski, Glenn H. Olsen, M. Elsbeth Mcphee

Proceedings of the North American Crane Workshop

Whooping cranes (Grus americana) are 1 of the most endangered bird species in North America. In 1999 the Whooping Crane Eastern Partnership was formed to establish a migratory population of whooping cranes in eastern North America. These efforts have been extremely successful in terms of adult survival but reproductive success post-release has been low. One hypothesis developed to explain such low reproductive success is that captive-rearing techniques fail to prepare the birds to be effective parents. Captive-reared whooping cranes at the U.S. Geological Survey, Patuxent Wildlife Research Center, Laurel, Maryland, are either reared by humans in crane costumes …

Lessons Learned From A 20-Year Collaborative Study On American Black Bears, Jon P. Beckmann, Carl W. Lackey

Human–Wildlife Interactions

In the 1980s, black bears (Ursus americanus) began expanding into historic habitats in northwestern Nevada, USA. Over a period of >30 years, black bears recolonized areas where human populations have also increased. Our research represents one of, if not the longest-running and earliest comparative studies of a black bear population at wildland–urban interface and wildland areas in North America. As the population increased, we observed: 1) increasing human–bear conflicts in areas where several generations of people had lived in almost total absence of bears (70–80+ years); 2) changes in attitudes by the public toward bears and in the …

Investigating The Ecology Of A Rare Species On St. John, Usvi: Reintroducing Solanum Conocarpum In Light Of Climate Change, Cecilia Rogers

Senior Honors Projects, 2010-2019

Approximately two thirds of St. John is National Park territory. However, the land has been threatened with tourism and development, greatly impacting island biodiversity. One species that may become extinct due to this degradation is Solanum conocarpum. S. conocarpum is a rare shrub, endemic to the dry tropical forests of St. John, USVI. This plant is a species of conservation concern and is one of very few native and endemic plants on this island. Very little is known about the ecology and reproduction of S. conocarpum. Most plants are found on the southern half of the island. Recent observations …

Analysis Of Population Structure In A California Newt (Taricha Torosa) Metapopulation, Jessica Vincent

Mahurin Honors College Capstone Experience/Thesis Projects

As anthropogenic influences take an ever-increasing toll on the environment, understanding how environmental change affects species is paramount. Concern regarding decline in amphibian populations has spurred research examining the effects of habitat change on the dynamics of populations at landscape levels. One important goal is to understand how gene flow among populations is affected by changes in habitat. Biologists need to consider the relationship between gene flow and habitat alterations so that movements among individual breeding ponds can be maintained over time, reducing risk of local extinction events. This study focuses on patterns of gene flow among thirteen populations of …

The Population Genetics Of Morro Bay Eelgrass (Zostera Marina), Julia Gardner Harencar

Master's Theses

Seagrass populations are in decline worldwide. Zostera marina (eelgrass), one of California’s native seagrasses, is no exception to this trend. In the last 8 years, Morro Bay, California has lost 95% of its eelgrass. Eelgrass is an ecosystem engineer, providing important ecosystem services such as sediment stabilization, nutrient cycling, and nursery habitats for fish. The failure of recent restoration efforts necessitates a better understanding of the causes of eelgrass decline in this estuary. Previous research on eelgrass in California has demonstrated a link between population genetic diversity and eelgrass bed health, ecosystem functioning, and resilience to disturbance and extreme climatic …

Trap-Neuter-Return Programs And The Importance Of Associated Public Awareness, Nicolette Sliwa

Biology: Student Scholarship & Creative Works

The focus of this paper is to describe a typical Trap-Neuter-Return (TNR) program and highlight the major pros and cons surrounding this somewhat controversial method of managing the overwhelming free-roaming cat population. The effects of the species’ overabundance on the environment and human health are also discussed. Citing studies completed on TNR programs around the globe as well as mathematical models, the effectiveness of this method is compared to other, currently used alternatives. Finally, it has been suggested that the general awareness level a neighborhood possesses about the true goals of TNR programs has a potentially significant impact on the …

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

The International Whaling Commission—Beyond Whaling, Andrew J. Wright, Mark P. Simmonds, Barbara Galletti Vernazzani

Wildlife Population Management Collection

Since its establishment in 1946 as the international body intended to manage whaling, the International Whaling Commission (IWC) has expanded its areas of interest to ensure the wider conservation of whales. Several key conservation topics have been taken forward under its auspices including climate change, chemical and noise pollution, marine debris and whale watching. Work on each of these topics at the IWC has grown substantially since the 1990s and remains ongoing. Important developments were the establishment of the Standing Working Group on Environmental Concerns in 1996 and the IWC’s Conservation Committee in 2003. Trying to address this diverse set …

Occupancy Rates And Detection Probabilities Of Red-Backed Salamanders On The Virginia Fall Line, Jay D. Mcghee

Virginia Journal of Science

To meet the conservation needs of declining amphibian populations, there is a need to assess monitoring techniques in various habitat types and seasons. I assessed detection rates and proportion of area occupied via transect monitoring for red-backed salamanders at a site along the Virginia Fall Line in Doswell, Virginia. I established 24 transects in a 3.2-ha area in both riparian and upland habitats. Objects providing natural cover along these transects were sampled 3 times a week in fall and spring over a two-year period. Models of occupancy and detection were developed and compared using Akaike’s Information Criterion. Based on 113 …

Surveys For The Alabama Map Turtle (Graptemys Pulchra) In The Coosa River, Georgia, John B. Jensen

Georgia Journal of Science

The Alabama Map Turtle, found only in Mobile Bay drainages, is state-listed in Georgia as “rare” and has been petitioned for federal listing as “threatened.” Because this species has been poorly studied in Georgia and in the Coosa River especially, a survey was undertaken to determine its status in the Coosa to help inform the federal listing decision. The 2014-2015 survey involved counting basking turtles from a motorboat with the aid of binoculars. The Alabama Map Turtle was the third most abundantly observed turtle species during the survey, preceded by only the Slider and River Cooter. All size/age classes were …