Population Biology Commons^™

The Impacts Of Fishing And Stochasticity On Saving Coral Reefs, Robyn Blevins, Jordan Penn, Christopher Stieha

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Genomic Evidence Suggests Further Changes Of Butterfly Names, Jing Zhang, Qian Cong, Jinhui Shen, Pal A. Opler, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Further genomic sequencing of butterflies by our research group expanding the coverage of species and specimens from different localities, coupled with genome-scale phylogenetic analysis and complemented by phenotypic considerations, suggests a number of changes to the names of butterflies, mostly those recorded from the United States and Canada. Here, we present evidence to support these changes. The changes are intended to make butterfly classification more internally consistent at the genus, subgenus and species levels. That is, considering all available evidence, we attempt to assign similar taxonomic ranks to the clades of comparable genetic differentiation, which on average is correlated with …

Swimming Point Benthic Community Condition Elizabeth River (2019), Daniel M. Dauer

Elizabeth River Reports

Executive Summary

The subtidal macrobenthic communities off Swimming Point in the Elizabeth River were quantitatively sampled in summer 2019. The primary objective of this study was to characterize the ecological condition of the benthos compared to benthic data collected in summer 2010 (Dauer 2011).

The estimated the level of degraded benthic bottom of the Swimming Point stratum (BIBI < 3.0) in 2019 was 64% ± 18.8% a decrease from the 2010 value of 84% ± 14.0%. The level of severely degraded bottom (BIBI ≤ 2.0) in 2019 was 28% ± 17.6% compared to the 2010 value of 52% ± 19.6%. The ecological condition of benthic communities at Swimming Point in 2019 were comparable to the values for the Mainstem segment of the Elizabeth River in 2019 which had an estimated degraded benthic bottom of 52% ± 19.6% and a value of 36% ± 18.8 of severely degraded bottom.

The BIBI and its metrics showed a mixture of improvements and degradations in benthic community condition. Compared to the previous benthic community condition reported in Dauer (2011) the 2019 Swimming Point benthos: (1) the average BIBI value improved significantly from 2.2 ± …

Coyotes, Rick Tischaefer

Wildlife Damage Management Technical Series

The coyote (Canis latrans; Figure 1) is a medium-sized member of the canid family. Once primarily found in western deserts and grasslands, coyotes have expanded their range across North America and into diverse habitats, including urban areas. This expansion occurred during a time of extensive habitat change and efforts by people to suppress coyote populations to prevent damage. Coyotes can cause a variety of conflicts related to agriculture, natural resources, property, and human health and safety. This document highlights a variety of methods for reducing those conflicts. Coyotes are a highly adaptable species and may become habituated to some management …

Adaptive Divergence, Neutral Panmixia, And Algal Symbiont Population Structure In The Temperate Coral Astrangia Poculata Along The Mid-Atlantic United States, Hannah E. Aichelman, Daniel J. Barshis

Biological Sciences Faculty Publications

Astrangia poculata is a temperate scleractinian coral that exists in facultative symbiosis with the dinoflagellate alga Breviolum psygmophilum across a range spanning the Gulf of Mexico to Cape Cod, Massachusetts. Our previous work on metabolic thermal performance of Virginia (VA) and Rhode Island (RI) populations of A. poculata revealed physiological signatures of cold (RI) and warm (VA) adaptation of these populations to their respective local thermal environments. Here, we used whole-transcriptome sequencing (mRNA-Seq) to evaluate genetic differences and identify potential loci involved in the adaptive signature of VA and RI populations. Sequencing data from 40 A. poculata individuals, including 10 …

Spotted Owls And Forest Fire: Comment, Gavin M. Jones, R. J. Gutiérrez, William M. Block, Peter C. Carlson, Emily J. Comfort, Samuel A. Cushman, Raymond J. Davis, Stephanie A. Eyes, Alan B. Franklin, Joseph L. Ganey, Shaula Hedwall, John J. Keane, Rodd Kelsey, Damon B, Lesmeister, Malcolm P. North, Susan L. Roberts, Jeremy T. Rockweit, Jamie S. Sanderlin, Sarah C. Sawyer, Ben Solvesky, Douglas J. Tempel, Ho Yi Wan, A. Leroy Westerling, Gary C. White, M. Zachariah Peery

United States Department of Agriculture Wildlife Services: Staff Publications

Western North American forest ecosystems are experiencing rapid changes in disturbance regimes because of climate change and land use legacies (Littell et al. 2018). In many of these forests, the accumulation of surface and ladder fuels from a century of fire suppression, coupled with a warming and drying climate, has led to increases in the number of large fires (Westerling 2016) and the proportion of areas burning at higher severity (Safford and Stevens 2017, Singleton et al. 2018). While the annual area burned by fire is still below historical levels (Taylor et al. 2016), some forest types in the west …

Distribution Of Crickets (Subfamily: Phalangopsinae) In Caves Of Baratang Island, Andaman And Nicobar Islands, India, Amruta Dhamorikar, Dhanusha Kawalkar, Shirish Manchi

International Journal of Speleology

Cave-dwelling organisms share different ecological and evolutionary relationships with caves. Based on these interactions, they are categorized as troglobites, troglophiles, and trogloxenes. In India, caves are meagerly explored, and thus cave study is in its infancy in India. Through the present study, we attempted to understand and model the distribution of crickets (Family Phalangopsidae), a critical group of insects - being the primary consumers in the cave ecosystems. We sampled seven caves using belt transects (N = 184; total area covered = 1294.9 m²) with 1 m width. During the survey, we encountered 818 individual crickets (116.85 ± …

Loci Associated With Antibody Response In Feral Swine (Sus Scrofa) Infected With Brucella Suis, Courtney F. Pierce, Vienna R. Brown, Steven C. Olsen, Paola Boggiatto, Kerri Pedersen, Ryan S. Miller, Scott E. Speidel, Timothy J. Smyser

United States Department of Agriculture Wildlife Services: Staff Publications

Feral swine (Sus scrofa) are a destructive invasive species widespread throughout the United States that disrupt ecosystems, damage crops, and carry pathogens of concern for the health of domestic stock and humans including Brucella suis—the causative organism for swine brucellosis. In domestic swine, brucellosis results in reproductive failure due to abortions and infertility. Contact with infected feral swine poses spillover risks to domestic pigs as well as humans, companion animals, wildlife, and other livestock. Genetic factors influence the outcome of infectious diseases; therefore, genome wide association studies (GWAS) of differential immune responses among feral swine can provide …

A Review Of Avian Influenza A Virus Associations In Synanthropic Birds, Susan A. Shriner, J. Jeffrey Root

United States Department of Agriculture Wildlife Services: Staff Publications

Avian influenza A viruses (IAV) have received significant attention due to the threat they pose to human, livestock, and wildlife health. In this review, we focus on what is known about IAV dynamics in less common avian species that may play a role in trafficking IAVs to poultry operations. Specifically, we focus on synanthropic bird species. Synanthropic species, otherwise known as peridomestic, are species that are ecologically associated with humans and anthropogenically modified landscapes, such as agricultural and urban areas. Aquatic birds such as waterfowl and shorebirds are the species most commonly associated with avian IAVs, and are generally considered …

Geographic And Intra-Racial Disparities In Early-Onset Colorectal Cancer In The Seer 18 Registries Of The United States, Wesal H. Abualkhair, Meijiao Zhou, Carolina O. Ochoa, Leonel Lacayo, Caitlin Murphy, Xiao Cheng Wu, Jordan J. Karlitz

School of Medicine Faculty Publications

Background: Although early-onset colorectal cancer (EOCRC) incidence rates (IRs) are increasing, geographic and intra-racial IR disparities are not well defined. Methods: 2000-2015 Surveillance, Epidemiology, and End Results (SEER) program CRC IR Analysis (170,434 cases) was performed from ages 30 to 60 in four US regions, 18 individual registries, metropolitan and nonmetropolitan locations and stratified by race. Analyses were conducted in 1-year and 5-year age increments. Results: Wide US regional EOCRC IR variations exist: For example, age 45 IRs in the south are 26.8/100,000, 36.0% higher than the West, 19.7/100,000 (p < 0.0001). Disparities magnify between individual registries: EOCRC IRs in highest risk registries were 177-348% (Alaska Natives), 75-200% (Hawaii), 76-128% (Louisiana), and 61-125% (Kentucky) higher than lowest risk registries depending on age. EOCRC IRs are 18.2%-25.6% higher in nonmetropolitan versus metropolitan settings. Wide geographic intra-racial disparities exist. Within the White population, the greatest IR difference (78.8%) was between Kentucky (5.9/100,000) and Los Angeles (3.3/100,000) in 30- to 34-year-olds (p <.0001). Within the Black population, the greatest difference (136.2%) was between rural Georgia (30.7/100,000) and California excluding San Francisco-Oakland/San Jose-Monterey/Los Angeles (13/100,000) in 40- to 44-year-olds (p = 0003). Conclusion: Marked geographic EOCRC disparities exist with disproportionately high IRs in Alaska Natives, Hawaii, and southern registries. Geographic intra-racial disparities are present within White and Black populations. In Blacks, there are disproportionately high EOCRC IRs in rural Georgia. Although vigilance is required in all populations, attention must be paid to these higher risk populations. Potential interventions include assuring early investigation of symptoms, targeting modifiable risk factors and utilizing earlier age 45 screening options supported by some guidelines.

Tools, Techniques And Teamwork: Transferring New Technologies For Wildlife Management, Conservation And Economic Development, John Eisemann, Gail Keirn

United States Department of Agriculture Wildlife Services: Staff Publications

Did you ever wonder who invented radio telemetry? Or breakaway snares? What about the bird repellent methyl anthranilate or the livestock protection collar? These and many other tools used in wildlife damage management resulted from creative thinking by biologists, technicians, researchers and managers working to solve complex wildlife issues. Over the past 90 years, these “aha moments” within the U.S. Department of Agriculture’s Wildlife Services program have ranged from developing novel scare devices, traps and vaccines to exploiting an animal’s visual capabilities to stop unwanted behaviors. Once discovered, these unique ideas may lead to practical, feasible and cost-effective wildlife damage …

Instability Of Glucocorticoid Metabolites In Coyote Scats: Implications For Field Sampling, Erika T. Stevenson, Eric M. Gese, Lorin A. Neuman-Lee, Susannah S. French

United States Department of Agriculture Wildlife Services: Staff Publications

Studying physiologic stress responses can assist in understanding the welfare of animals. One method of measuring the physiologic stress response is evaluating concentrations of glucocorticoid metabolites in feces. Previously, using an adrenocorticotropic hormone challenge, we found fecal glucocorticoid metabolite levels were a reliable indicator of physiologic stress response in coyotes (Canis latrans). We determine whether glucocorticoid metabolite concentrations remain stable when collecting feces over a 2-week period, a timeframe commonly used in scat surveys for wild canids. We collected feces from 6 captive coyotes maintained at the U.S. Department of Agriculture, Wildlife Services, National Wildlife Research Center, Predator …

Impact Of Anthropic Pressure On The Quality And Diversity Of Groundwater In The Region Of Sighus Oum-El-Bouaghi And El Rahmounia, Algeria., Hadjab Ramzi, Khammar Hichem, Redjaimia Lylia, Merzoug Djemoi, Saheb Menouar

Journal of Bioresource Management

Groundwater of Oum-El-Bouaghi and its surroundings hosts a variety of microflora and fauna. This study investigated the relationship between the effect of human activity and the biodiversity and distribution of aquatic fauna in two semi-arid regions Sighus region (Oum-El-Bouaghi) and El Rahmouni (Constantine) in north-eastern Algeria. Fourteen wells and six springs were studied in two hydrographic basins, that of Constantine and Seybouse Melegue. Significant differences were revealed between the wells and springs in the two watersheds, making it possible to distinguish four groups of wells and two groups of springs. The overall faunal richness of the stations appeared to be …

Distribution And Activity Patterns Of Large Carnivores And Their Implications For Human–Carnivore Conflict Management In Namibia, Summer Fink, Richard Chandler, Michael Chamberlain, Steven Castleberry, Shannon Glosenger-Thrasher

Human–Wildlife Interactions

Human–wildlife conflicts (HWCs) are increasing globally and contributing to the decline of wildlife species. In sub-Saharan African countries such as Namibia, most of the suitable land has been or is currently being converted to crop and livestock production to support income or subsistence agriculture. These changes in land use often incur increased levels of HWCs because of crop and livestock depredation by native species. To quantify livestock predation risks posed by carnivores in Namibia, we deployed 30 trail cameras on a 6,500-ha farm in the Khomas region of Namibia from May to July 2018. We developed occupancy models to make …

Evidence For Height And Immune Function Trade-Offs Among Preadolescents In A High Pathogen Population, Angela R. Garcia, Aaron Blackwell, Benjamin C. Trumble, Jonathan Stieglitz, Hillard Kaplan, Michael Gurven

ESI Publications

Background

In an energy-limited environment, caloric investments in one characteristic should trade-off with investments in other characteristics. In high pathogen ecologies, biasing energy allocation towards immune function over growth would be predicted, given strong selective pressures against early-life mortality.

Methodology

In the present study, we use flow cytometry to examine trade-offs between adaptive immune function (T cell subsets, B cells), innate immune function (natural killer cells), adaptive to innate ratio and height-for-age z scores (HAZ) among young children (N = 344; aged 2 months–8 years) in the Bolivian Amazon, using maternal BMI and child weight-for-height z scores (WHZ) as …

Summer Field Report, June-July 2020, W. Ross Silcock

Nebraska Bird Review

Overall, this was a fairly routine summer although birders in Nebraska know that “routine” still holds promise of a few happenings out of the ordinary. The summer season primarily examines new breeding records, range expansions, and changes in numbers, up or down. Mississippi Kites were conspicuous, a pair providing Scottsbluff’s first breeding record, but a repeating pair in Lincoln, Lancaster lost its nest in a windstorm. The first nesting record for Violet-Green Swallow for Sheridan, 7th nesting for White-winged Dove, and 9th for Short-eared Owl were all encouraging, as was an apparent family group of Northern Saw-whet Owls in Sioux. …

Robert Wolcott And The Art Of Nest Records, Thomas E. Labedz

Nebraska Bird Review

The autumn of 1894 was fortuitous for Nebraska ornithology because it is when Robert Henry Wolcott accepted an assistantship at the University of Nebraska, moving to Lincoln from the University of Michigan (Swenk 1935). Wolcott, from that point onward, made significant contributions to our knowledge of Nebraska birds (Bruner et al. 1903, Wolcott 1909, 1919), was a founding member of the Nebraska Ornithologists’ Union (NOU), and was editor for the first three Proceedings of the NOU from 1899-1902. His work expanded beyond local focus and he eventually authored a text on animal biology (Wolcott 1933). The topic of this paper, …

The Nebraska Bird Review, Volume 88 September 2020, Number 3

Nebraska Bird Review

Summer Field Report, June - July 2020, by W. Ross Silcock …94.

Robert Wolcott and the Art of Nest Records, by Thomas E. Labedz …112

2019 (31st) Report of the NOU Records Committee, by Mark A. Brogie …124

Subscription and Organization Information …135

Great Lakes Snake: Estimating The Occupancy And Detection Probabilities Of The Eastern Massasauga Rattlesnake (Sistrurus Catenatus), Arin June Thacker

Masters Theses

Detailed knowledge of a species’ range and distribution is important for understanding species persistence and developing species management plans. This issue is particularly pronounced in threatened species with wide-spread range and a low detectability in their natural environment, as surveying and successfully encountering this type of species is oftentimes difficult. One such species is the eastern massasauga rattlesnake (Sistrurus catenatus), a smallbodied pit viper with a distribution centered around the Great Lakes region. We used singleseason occupancy modeling in order to reassess the status of historic massasauga occurrences. We evaluated factors affecting eastern massasauga detection probability from a …

Vampire Bats: Preparing For Range Expansion Into The U.S., Michael J. Bodenchuk, David L. Bergman

United States Department of Agriculture Wildlife Services: Staff Publications

The common vampire bat apparently is expanding its range northwards in Mexico and seems poised to enter the southern United States. Climate models predict suitable habitat in the U.S. in south Texas and parts of southern Arizona. While vampire bats’ northward range expansion is not unexpected, the fact that this species brings a strain of rabies that impacts livestock and people warrants a strategic response. Annual economic damages from bats are estimated between $7M and $9M, largely associated with deaths of livestock from rabies. To prepare for the emerging rabies issue, USDA Wildlife Services programs in Texas and Arizona have …

Genetic And Environmental Indicators Of Climate Change Vulnerability For Desert Bighorn Sheep, Tyler G. Creech, Clinton W. Epps, John D. Wehausen, Rachel S. Crowhurst, Jef R. Jaeger, Kathleen Longshore, Brandon Holton, William B. Sloan, Ryan J. Monello

Life Sciences Faculty Research

Assessments of organisms’ vulnerability to potential climatic shifts are increasingly common. Such assessments are often conducted at the species level and focused primarily on the magnitude of anticipated climate change (i.e., climate exposure). However, wildlife management would benefit from population-level assessments that also incorporate measures of local or regional potential for organismal adaptation to change. Estimates of genetic diversity, gene flow, and landscape connectivity can address this need and complement climate exposure estimates to establish management priorities at broad to local scales. We provide an example of this holistic approach for desert bighorn sheep (Ovis canadensis nelsoni) within and surrounding …

Ecology And Evolution, David J. Lohman

Open Educational Resources

Introduction to the basic principles of ecology and evolutionary biology emphasizing quantitative approaches and hypothesis testing. Scientific reasoning, computer literacy, and writing skills are developed in the laboratory.

Assessment Of Wild Ring-Tailed Lemur (Lemur Catta) Populations In Southwestern Madagascar With Implications For The Illegal Pet Trade, Samantha D. Calkins

Theses and Dissertations

Accurate population estimates are critical to inform conservation management of species. Incomplete sampling can lead to population underestimates and lacking conservation efforts. Population surveys are important for assessing human and animal welfare to allow for targeted conservation action. Recent ring-tailed lemur (Lemur catta) surveys have led researchers to conclude that L. catta populations are crashing. This has generated much attention and alarm, but may also be based on incomplete information. To better understand population dynamics, more thorough sampling is needed. Here, we survey five such sites to reassess the presence and abundance of L. catta in these locations. …

Structure And Evolution Of Lizard Immunity Genes, Trent Santonastaso

LSU New Orleans Theses and Dissertations

One of the most important gene families to play a role in adaptive immunity is the major histocompatibility complex (MHC). MHC class II loci are considered to be the most variable loci in the vertebrate genome, and studies have shown that this variability can be maintained through complex co-evolutionary dynamics between host and parasite. Despite the rich body of research into the MHC, there is comparatively little understanding of its genomic architecture in reptiles. Similarly, loci associated with innate immunity have received little attention in reptiles compared to other vertebrates. In the first chapter, we investigated the structure and organization …

Documenting West And Central African Dung Beetle (Coleoptera: Scarabaeinae) Community Structures And Their Vulnerability To Climate Change, Christie A. Sukhdeo

LSU New Orleans Theses and Dissertations

The Guineo-Congolian (GC) region of West and Central Africa contains high levels of species richness (SR) and endemism. Within the GC region, the Cameroon Volcanic Line (CVL) is an important biodiversity hotspot in part due to montane habitats that constitute important ‘sky islands’ refugia during warm periods of the Pleistocene glacial cycles. However, little is known about the diversity of many taxa in the GC region, especially for insects. The main goals of this dissertation are to: 1) document dung beetle (Coleoptera: Scarabaeinae) species diversity across the GC region and assess the potential impacts of future climate change on species …

Prioritizing The Largest, Oldest Corals For Disease Intervention In A Coral Disease-Ravaged Area: Southeast Florida Coral Reef Ecosystem Conservation Area, Alysha Brunelle

All HCAS Student Capstones, Theses, and Dissertations

Coral diseases appear to be more devastating than ever before. When a virulent disease ravages a coral ecosystem, it can significantly change the population’s demographics and cause local extinctions. Disease intervention response during such an event is impossible at a landscape scale, therefore priorities must be considered. Saving the largest, oldest colonies of reef-building species is a good choice due to their high fecundity and ecological function. Their size, as a proxy for age, is an indicator of their resistance to previous perturbations which may indicate higher fitness. Their size also provides habitat to many organisms and wave resistance in …

2019 (31st) Report Of The Nou Records Committee, Mark A. Brogie

Nebraska Bird Review

The functions and methods of the Nebraska Ornithologists’ Union Records Committee (NOURC) are described in its bylaws (NOURC 2010). The committee’s purpose is to provide a procedure for documenting unusual bird sightings and to establish a list of all documented birds for Nebraska. Species for which the NOURC seeks documentation (NOURC Review List) can be found at the NOU website www.NOUbirds.org. Starting in 2020, the NOURC will deal mainly with those species deemed as Accidental on the “Official List of the Birds of Nebraska”. Casual species and out-ofrange species will continue to be summarized in the “Seasonal Reports” of the …

Benthic Biological Monitoring Of The Elizabeth River Watershed (1999 And 2019), Daniel M. Dauer

Elizabeth River Reports

Executive Summary

A study of the macrobenthic communities of the Elizabeth River watershed was conducted in summer 1999 and again in summer 2019 – a 20-year span. The primary objective of the Benthic Biological Monitoring Program of the Elizabeth River watershed was to characterize the ecological condition of regional areas of the tidal waters of the Elizabeth River watershed as indicated by the structure of the benthic communities. These characterizations are based upon application of the Benthic Index of Biotic Integrity (BIBI) developed for the Chesapeake Bay to five primary strata - the Mainstem of the river, the Lafayette River, …

Population Surveys And Health Assessments Of Captive And Free-Ranging Alligator Snapping Turtles, Samantha Louise Hannabass

Graduate Theses/Dissertations

Alligator Snapping Turtles (Macrochelys temminckii) have experienced range-wide declines primarily due to overharvest for the meat market and habitat degradation in the form of damming and channelization of rivers. Head-start programs and reintroduction efforts have been initiated to release individuals throughout their historic range. Before releasing Alligator Snapping Turtles, sites need to be assessed to determine the suitability of habitat, if there is a robust turtle community already present, and the causes of the original extirpation have been eliminated. I assessed the turtle communities and documented anthropogenic impacts (e.g. boat traffic) at nine possible reintroduction sites in southeastern …

Patterns And Drivers In Counts Of Migratory Raptors At Hawk Mountain Sanctuary, Usa, Patricia Kaye Tahura Dumandan

Boise State University Theses and Dissertations

Understanding the mechanisms driving biodiversity patterns amidst an era of global environmental change is the core of modern ecological research. The magnitude of biodiversity losses associated with anthropogenic activities has prompted resource managers and ecologists alike to identify strategies to address conservation issues. Broadly, two types of approaches are employed to answer ecological research questions: 1) single-species and 2) ecosystem-based approach. Single-species approaches are often useful to elucidate mechanisms driving population trajectories of individual species. On the other hand, ecosystem-based approaches can help in identifying general patterns that may be useful for multi-species management.

Here, I used both approaches in …