Population Biology Commons^™

Improving The Accessibility And Transferability Of Machine Learning Algorithms For Identification Of Animals In Camera Trap Images: Mlwic2, Michael A. Tabak, Mohammad S. Norouzzadeh, David W. Wolfson, Erica J. Newton, Raoul K. Boughton, Jacob S. Ivan, Eric Odell, Eric S. Newkirk, Reesa Y. Conrey, Jennifer Stenglein, Fabiola Iannarilli, John Erb, Ryan K. Brook, Amy J. Davis, Jesse Lewis, Daniel P. Walsh, James C. Beasley, Kurt C. Vercauteren, Jeff Clune, Ryan S. Miller

United States Department of Agriculture Wildlife Services: Staff Publications

Motion-activated wildlife cameras (or “camera traps”) are frequently used to remotely and noninvasively observe animals. The vast number of images collected from camera trap projects has prompted some biologists to employ machine learning algorithms to automatically recognize species in these images, or at least filter-out images that do not contain animals. These approaches are often limited by model transferability, as a model trained to recognize species from one location might not work as well for the same species in different locations. Furthermore, these methods often require advanced computational skills, making them inaccessible to many biologists. We used 3 million camera …

Tissue Tropisms Of Avian Influenza A Viruses Affect Their Spillovers From Wild Birds To Pigs, Xiaojian Zhang, Fred L. Cunningham, Lei Li, Katie Hanson-Dorr, Liyuan Liu, Kaitlyn Waters, Minhui Guan, Alicia K. Olivier, Brandon S. Schmit, Jacqueline M. Nolting, Andrew S. Bowman, Mia Kim Torchetti, Thomas J. Deliberto, Xiu-Feng Wan

United States Department of Agriculture Wildlife Services: Staff Publications

Wild aquatic birds maintain a large, genetically diverse pool of influenza A viruses (IAVs), which can be transmitted to lower mammals and, ultimately, humans. Through phenotypic analyses of viral replication efficiency, only a small set of avian IAVs were found to replicate well in epithelial cells of the swine upper respiratory tract, and these viruses were shown to infect and cause virus shedding in pigs. Such a phenotypic trait of the viral replication efficiency appears to emerge randomly and is distributed among IAVs across multiple avian species and geographic and temporal orders. It is not determined by receptor binding preference …

Using Bioenergetics And Radar-Derived Bird Abundance To Assess The Impact Of A Blackbird Roost On Seasonal Sunflower Damage, Bonnie A. Clark, Page E. Klug, Phillip M. Stepanian, Jeffrey F. Kelly

United States Department of Agriculture Wildlife Services: Staff Publications

Methods aimed at reducing avian damage to agricultural crops are routinely implemented in situations where efficacy can be assessed by quantifying blackbird (Icteridae) abundance relative to environmental variables and extrapolating to ensuing crop damage. Concomitantly, Weather Surveillance Radar (WSR) data may have potential to enhance crop damage mitigation through improved monitoring of nuisance wildlife populations. We used WSR to derive daily abundance estimates of blackbirds at a fall roost in North Dakota, USA from 2012 to 2019. We integrated these estimates with previously developed bioenergeticseconomic models to estimate local sunflower (Helianthus annuus) damage. The greatest losses usually occurred during …

Historic And Contemporary Use Of Catfish Aquaculture By Piscivorous Birds In The Mississippi Delta, Paul C. Burr, Jimmy L. Avery, Garrett M. Street, Bronson K. Strickland, Brian S. Dorr

United States Department of Agriculture Wildlife Services: Staff Publications

Piscivorous birds are the primary source of catfish (Ictalurus spp.) depredation at aquaculture facilities in northwestern Mississippi. Of particular concern is the Double-crested Cormorant (Phalacrocorax auritus), which can cost aquaculture producers millions of dollars annually through the depredation of cultured fish. Historical research conducted in the early 2000s estimated cormorant use of aquaculture ponds in the region, but aquaculture area has decreased by more than 70% since those estimates were made. With less aquaculture available, we predicted cormorant densities on aquaculture would be greater today than historically. Applying a similar methodology as in historical studies, we used …

Invasive Species Control And Resolution Of Wildlife Damage Conflicts: A Framework For Chemical And Genetically Based Management Methods, Larry Clark, John Eisemann, John Godwin, Katherine Horak, Kevin Oh, Jeanette R. O'Hare, Antoinette J. Piaggio, Kim M. Pepin, Emily W. Ruell

United States Department of Agriculture Wildlife Services: Staff Publications

Vertebrate wildlife damage management relates to developing and employing methods to mitigate against damage caused by wildlife in the areas of food production, property damage, and animal or human health and safety. Of the many management tools available, chemical methods (e.g., toxicants) draw the most attention owing to issues related to environmental burden, species specificity, and humaneness. Research and development focusing on RNA interference and gene drives may be able to address the technical aspects of performance goals. However, there remain many questions about regulation, environmental risk, and societal acceptance for these emerging biological technologies. Here we focus on the …

Repellent Surface Applications For Pest Birds, Shelagh T. Deliberto, James C. Carlson, Hailey E. Mclean, Caroline S. Olson, Scott J. Werner

United States Department of Agriculture Wildlife Services: Staff Publications

Common pest birds in the United States include the non-native European starling (Sturnus vulgaris), house sparrow (Passer domesticus), and the pigeon (Columba livia domestica), as well as native birds including Canada geese (Branta canadensis) and gull species (Laridae). Large concentrations of pest birds can create human health hazards and monetary losses due to consumption of crops, depredation, and fecal contamination and accumulation. Fecal contamination hazards include the potential spread of zoonotic diseases including antimicrobial-resistant zoonoses and human injury due to the accumulation of fecal material on walking surfaces. Additionally, fecal accumulation causes …

Black Vulture Conflict And Management In The United States: Damage Trends, Management Overview, And Research Needs, Bryan M. Kluever, Morgan Pfeiffer, Scott C. Barras, Brett Dunlap, Lee A. Humberg

United States Department of Agriculture Wildlife Services: Staff Publications

Contrary to rapid declines of many vulture (Accipitridae, Cathartidea) species worldwide, black vulture (Coragyps atratus) populations are increasing and expanding their range in North America. Vultures exhibit complex behaviors and can adapt to any human-dominated landscape or land use. These traits, combined with population growth and range expansion, have contributed to increased human–vulture conflicts. Our goal was to summarize the current status and trends in human–black vulture conflicts (hereafter human– vulture conflicts), review available management strategies, identify knowledge gaps, and provide recommendations to enhance management and understanding of this species and the associated conflicts. We found human–vulture conflicts …

Review Of Ospreys: The Revival Of A Global Raptor, By Alan F. Poole. 2019., Lisa Fields, Brian E. Washburn

United States Department of Agriculture Wildlife Services: Staff Publications

For the past three decades, Alan Poole’s (1989) Ospreys: A Natural and Unnatural History has provided a solid foundation for those seeking a primer on the basic biology and ecology of Ospreys (Pandion haliaetus). Poole’s summary of knowledge about Ospreys was written at a time when these amazing birds were recovering from their DDTinduced population crash, but this important book has long been out of print. In the intervening decades, much has been learned regarding Ospreys. In his new book, Ospreys: The Revival of a Global Raptor, Poole guides the reader through a tour of Ospreys’ worldwide distribution and population …

Population Increases Of Large Birds In North America Pose Challenges For Aviation Safety, Richard A. Dolbeer

United States Department of Agriculture Wildlife Services: Staff Publications

There is a strong correlation between bird mass and the likelihood of aircraft damage during a bird–aircraft collision. Thus, the U.S. Federal Aviation Administration (FAA) has established airworthiness standards related to bird mass for engines, airframes, and windshields. Most standards use large (1.8 kg) and medium (1.1 kg) birds as benchmarks (the empennage and certain large turbofan engines use a 3.6-kg bird). There are 20 large (≥1.8 kg) and 16 medium (1.1–1.7 kg) bird species in North America with ≥20 strikes reported for civil aircraft (FAA National Wildlife Strike Database), 1990 to 2018. I analyzed the population changes of these …

Habitat Stability In Appalachian Headwater Systems And Potential Impacts On Brook Trout Populations, Zac F.W Zacavish

Graduate Theses, Dissertations, and Problem Reports (ETD)

The impact climate change will have on the habitat for Brook Trout (Salvelinus fontinalis) could directly impact key demographic characteristics. Traditionally, broad-scale studies of climate change effects on the family Salmonidae focus on the thermal shifts predicted over the next century. While some studies shed light onto other variables such as biotic interactions, flow regime, and disturbance, the significance of the climate-trout interaction is not always observed. With the high degree of influence climate cycles can have on habitat and channel morphology, this study aimed to highlight temporal habitat shifts to begin addressing climate-habitat interaction. By studying habitat distribution …

Trees, Fungi, Insects: How Host Plant Genetics Builds A Community, Sandra Jeanne Simon

Graduate Theses, Dissertations, and Problem Reports (ETD)

Organisms, such as fungi and insects, can cause millions of acres of agricultural and forest damage, while others provide billions of dollars in ecological services such as education, aesthetic enjoyment, pollination, and gardening. Plant breeding and biotechnology can potentially help establish a balance between the proliferation of detrimental pests and attraction of beneficial insects. Variation in plant physiological and morphological characteristics are extremely important in the ability of host tissues to support many different types of organisms. When that variation is genetically heritable in a plant population, shifts in the underlying genes can have predictable consequences in structuring entire ecosystems. …

Comparing Fence Modeling And Mapping Approaches To Support Wildlife Management And Research In Southwest Montana, Simon Albert Buzzard

Graduate Student Theses, Dissertations, & Professional Papers

Fences pose significant challenges to wildlife movement, but their effects are difficult to quantify because fence location and fence type data are lacking on a global scale. We developed a fence location and density model in southwest Montana, USA to provide data to researchers and managers, and test whether previous models could be applied to a new region and retain suitable levels of statistical accuracy. Our model used local expert opinion to inform how road, land cover, and ownership spatial layers interacted to predict fence locations. We validated the model against fence data collected on random 3.2 km road transects …

Size At Maturation, Spawning Variability And Fecundity In The Queen Conch, Aliger Gigas, Richard S. Appeldoorn

Gulf and Caribbean Research

The queen conch (Aliger gigas) resource is one of the most important in the Caribbean. While aspects of queen conch reproduction have been studied, e.g., size—at—maturity, spawning season, and density—based Allee effects, there is little information on other important aspects. From 210 lipped queen conch collected off southwest Puerto Rico, histological examination of gonads showed that 50% maturation occurred at 9 mm lip thickness. Experimental caged queen conch held on a natural spawning ground were monitored across the spawning season to evaluate fecundity and its variability across individuals and between nominal density treatments (2,000 vs 143 conch/ha). Near …

A Tale Of Two Cervids: Habitat Selection And Spatial Ecology Of Roosevelt And Tule Elk In California, Adam S. Mohr

Cal Poly Humboldt theses and projects

California’s Roosevelt (Cervus canadensis rooseveltii) and tule elk (C. c. nannodes) populations have experienced a remarkable recovery after over-hunting and habitat loss nearly extirpated them from the state. Greater clarity of Roosevelt and tule elk habitat selection patterns would help managers continue to effectively support the recovery of these two iconic subspecies. As the manner in which elk populations balance their competing resource needs is unique to each population (Skovlin et al. 2002), I have examined Roosevelt and tule elk habitat selection patterns in separate analyses and present these results in independent chapters. In both cases, …

Estimates Of Calf Survival And Factors Influencing Roosevelt Elk Mortality In Northwestern California, Erin Nigon

Cal Poly Humboldt theses and projects

Survival of juvenile ungulates is known to be highly variable, yet it is fundamental to understanding the dynamics and trends of wildlife populations. Factors influencing calf survival are poorly understood in northwestern California where Roosevelt elk (Cervus canadensis roosevelti) are known to exist. The objectives of this study were 1) to estimate summer and annual survival rates and determine recruitment rates for Roosevelt elk calves in the area, 2) to evaluate differences in calf survival by examining the effects of individual and population level covariates on summer and annual calf survival, 3) to identify factors influencing the timing …

Effects Of Abiotic Factors On Host Plant Quality And Community Structure Of The Parasitoid Guild That Attacks Asphondylia Borrichiae Midges On Borrichia Frutescens, Kevin Orta

UNF Graduate Theses and Dissertations

Asphondylia borrichiae is a gall-inducing insect that attacks its ancestral host plant Borrichia frutescens: through ovipositional mistakes it has acquired two additional hosts, Iva frutescens and Iva imbricata. Oviposition results in the formation of a gall, a tumor-like growth of plant tissue within which immature A. borrichiae develop. During development, immature A. borrichiae, are attacked by a suite of four generalist hymenopteran parasitoids. Of these, Galeopsomyia haemon and Torymus umbilicatus are facultative hyperparasitoids, more common and exhibit non-random attack patterns. In the present study, soil quality was manipulated through bi-weekly application of either ammonium nitrate fertilizer or sodium …

Population Demographics Of Silver Carp Hypophthalmichthys Molitrix In Kentucky Lake, Allison M. Lebeda

Murray State Theses and Dissertations

Invasive species continue to threaten aquatic ecosystems in the United States. Silver Carp Hypophthalmichthys molitrix have successfully infiltrated much of the Mississippi River Basin, including Kentucky Lake – a large reservoir located on the Tennessee River in Western Kentucky. Although Silver Carp have been present in Kentucky Lake for at least a decade, until recently, very little was known about the population, how often successful reproduction is occurring, or the environmental conditions that facilitate strong year-classes. Hence, it is difficult for managers to predict the potential impact of Silver Carp on native species. Silver Carp were collected from Kentucky Lake …

Resource Selection And Calving Success Of Moose In Colorado, Forest P. Hayes

Graduate Student Theses, Dissertations, & Professional Papers

Across much of North America, moose populations (Alces alces) are declining due to disease, predation, climate, and anthropogenic pressures. Despite this, populations of moose in Colorado have continued to grow. Studying successful (i.e., persistent or growing) populations of moose can facilitate the continued conservation of the species by identifying habitat features critical for moose persistence.

First, I evaluated calving success of moose in Colorado and the impact of willow habitat quality and nutrition. I then estimated the probability of female moose having a calf using repeated observations in a Bayesian occupancy model. I assigned values for dry matter …

Why Advertise In Hwi?

Human–Wildlife Interactions

The benefits of advertising with Human–Wildlife Interactions and how to do so.

Berryman Institute Awards And Scholarships, Terry A. Messmer

Human–Wildlife Interactions

Applications are being accepted for professional awards and undergraduate student scholarships provided by the Berryman Institute.

Monograph Reduced Box Price: Managing Human–Deer Conflicts

Human–Wildlife Interactions

Order form for HWI monograph, Methods for Managing Human–Deer Conflicts in Urban, Suburban, and Exurban Areas. This monograph identifies challenges and benefits associated with many human–deer conflict mitigation actions as well as methods to monitor the response of deer populations to management actions. Deer exploit urban, suburban, and exurban areas where human populations provide anthropogenic attractants, either intentionally or inadvertently, which often leads to human–deer conflicts. Mitigating actions have varying degrees of efficacy and may not be effective or accepted in every situation. Wildlife and municipal managers must work together to seek methods to reduce attractants, mitigate conflicts, and perpetuate …

Evaluation Of The Impacts Of Radio-Marking Devices On Feral Horses And Burros In A Captive Setting, Kathryn A. Schoenecker, Sarah R. B. King, Gail H. Collins

Human–Wildlife Interactions

Radio-collars and other radio-marking devices have been invaluable tools for wildlife managers for >40 years. These marking devices have improved our understanding of wildlife spatial ecology and demographic parameters and provided new data facilitating model development for species conservation and management. Although these tools have been used on virtually all North American ungulates, their deployment on feral horses (Equus ferus caballus) or burros (E. asinus) has been limited. To determine if radio-collars and radio-tags could be safely deployed on feral equids, we conducted a 1-year observational study in 2015 to investigate fit and wear of radio-collars …

After Decades Of Suburban Deer Research And Management In The Eastern United States: Where Do We Go From Here?, Paul D. Curtis

Human–Wildlife Interactions

State wildlife agencies have regulatory authority and oversight over deer (Cervidae) management in the United States. However, increased urban sprawl and overabundant deer populations have created increased human–deer conflicts. Because of the growing controversy surrounding the use of traditional management practices such as regulated hunting in suburban areas in the eastern United States, managers are now using specialized tools and management approaches to reduce deer conflicts in urban areas. However, this has created new challenges as they try to meet the desires of diverse stakeholder groups. Although deer management programs in urban areas differ somewhat in every state, effective management …

Use Of Roadside Deer Removal To Reduce Deer–Vehicle Collisions, John C. Kilgo, John I. Blake, Tracy E. Grazia, Andy Horcher, Michael Larsen, Thomas Mims, Stanley J. Zarnoch

Human–Wildlife Interactions

Identification of management tools to reduce the incidence of deer–vehicle collisions (DVCs) is important to improve motorist safety. Sharpshooting to reduce white-tailed deer (Odocoileus virginianus; deer) along roads has proven successful in urban situations but has not been evaluated in undeveloped areas. We used a before-after-control-impact (BACI) design to evaluate the use of sharpshooting to reduce DVCs along roads on the uninhabited U.S. Department of Energy’s Savannah River Site, South Carolina, USA, during 2011–2017. We removed 242 deer from 4 treatment roads during 2015 and 2016, with 2-year removal rates per road averaging 5.0 deer/km of road (range …