Ecology and Evolutionary Biology Commons^™

Rewiring The Sex-Determination Pathway During The Evolution Of Self-Fertility., Yongquan Shen, Shin-Yi Lin, Jonathan Harbin, Richa Amin, Allison Vassalotti, Joseph Romanowski, Emily Schmidt, Alexis Tierney, Ronald E Ellis

Rowan-Virtua School of Osteopathic Medicine Departmental Research

Although evolution is driven by changes in how regulatory pathways control development, we know little about the molecular details underlying these transitions. The TRA-2 domain that mediates contact with TRA-1 is conserved in Caenorhabditis. By comparing the interaction of these proteins in two species, we identified a striking change in how sexual development is controlled. Identical mutations in this domain promote oogenesis in Caenorhabditis elegans but promote spermatogenesis in Caenorhabditis briggsae. Furthermore, the effects of these mutations involve the male-promoting gene fem-3 in C. elegans but are independent of fem-3 in C. briggsae. Finally, reciprocal mutations in these genes show …

Evolution And Adaptation To Temperature In Thermotogota, Anne Amelia Farrell

Dartmouth College Ph.D Dissertations

Life thrives across incredibly diverse environmental conditions, yet most organisms are restricted to growing within a narrow range around their optimum growth temperature (OGT). The evolutionary events leading to changes in OGT are poorly understood, and it is uncertain if specific genes are required to thrive at a particular temperature. The bacterial phylum Thermotogota is an excellent model for the evolution of OGT. It comprises mesophilic, thermophilic, and hyperthermophilic members that collectively grow between 20°C and 90°C.

In this work, I analyze the history of OGT in the Thermotogota phylum and show how horizontal gene transfer contributes to the evolution …

Multi-Type Branching Processes In Time-Varying Environments, Arash Jamshidpey

Biology and Medicine Through Mathematics Conference

No abstract provided.

A New Case Of Pedipalp Regeneration In Scorpio Kruglovi Birula, 1910 (Scorpiones: Scorpionidae), Ersen A. Yağmur, Mehmet S. Kılıç, Eyüp Güneş

Euscorpius

A new case of pedipalp regeneration is described and illustrated in a subadult female of Scorpio kruglovi Birula, 1910. A small, regenerated part of chela is observed on the anterior aspect of a normally developed right patella. This is the second published case of pedipalp regeneration.

Omani Camels From A Cultural And Genomics Perspective, Al Muatasim Al Zadjali

Electronic Theses and Dissertations

The Dromedarian camel, Camelus dromedarius, is native to the Arabian Peninsula, including the Sultanate of Oman. These camels are used for food, milk, as well as show and racing competitions. Despite their economic and cultural importance research on camels in Oman is limited. The goal of this study was to examine their genomic variation, relationship with camels in other parts of the Arabian Peninsula, and to determine if selective breeding has led to the establishment of distinct breeds in Oman. Information was compiled from multiple sources to produce a comprehensive review on the breeding, management, economic and cultural use, …

Comparative Functional And Computational Analyses Of Primate Seminal Proteins: Insights Into Sexual Selection And Hiv/Siv, Emine Feride Kahveci

Electronic Theses and Dissertations

Male reproductive protein-coding genes are among the most rapidly evolving genes across many animal taxa, commonly attributed to sexual selection; however, pathogen defense mechanisms might also be contributing factors. This study aimed to both computationally and experimentally investigate the selective pressures responsible for the rapid evolution of seminal proteins. In the first part, the research focused on sexual selection in the form of post-copulatory sperm competition as a driving force behind the evolution of kallikrein related peptidase 3 (KLK3), also known as prostate-specific antigen (PSA), a key prostatic seminal protein. KLK3 is responsible for the liquefaction of semen coagulum through …

Unraveling The Paradox Of The 'Great Speciators': Evolutionary Dynamics Of A Geographic Radiation Of Island Kingfishers (Todiramphus), Jenna Merle Mccullough

Biology ETDs

The paradox of the ‘Great Speciators’ describes a biogeographic pattern in which geographically widespread lineages have strong overwater dispersal capabilities, yet exhibit genetic and phenotypic divergence between islands, suggesting limited dispersal and cessation of gene flow. In my dissertation, I leveraged whole genomes and two comprehensive trait datasets of dispersal ability and plumage coloration of all described diversity within Todiramphus kingfishers, a rapid radiation of largely island endemic ‘Great Speciators.’ Chapter 1 reveals that whole genome datasets do not outright solve the evolutionary relationships of this clade and that widespread incomplete lineage sorting (ILS) and gene flow are sources of …

Bioinformatic Comparison And Salinity Tolerance Of Various Cyanobacterial Strains, Lucie Rowe

Honors Theses

Cyanobacteria are an abundant and diverse group of photosynthetic prokaryotes with a long evolutionary history, which presents challenges for comprehensive taxonomic classification. Phylogenies were traditionally constructed based on the highly conserved 16S rRNA gene, but research has increasingly relied upon whole genome sequencing to elucidate evolutionary relationships, despite increased cost and time. In this thesis, publicly available genome sequences of various cyanobacterial strains were utilized to determine if the whole rRNA region, which includes the 16S, 23S, and 5S genes as well as the spacer regions between, could provide accurate, yet cost/time efficient representations of their evolutionary relationships. From phylogenetic …

Crossing The Ocean: The Importance Of Gene Flow In Island Evolution, Ethan F. Gyllenhaal

Biology ETDs

Islands have long been a critical arena for the development of ecological and evolutionary theory, particular due to persistent open-water gaps between them. In this dissertation I demonstrates how these caps are permeable, which can be leveraged to understand evolution on islands and more broadly. The first chapter develops this connection between ongoing, overwater gene flow and island biogeographic theory, and tests it on an archipelago species. The second take a three-pronged approach in demonstrating how over-water gene flow can bias phylogenetic inference, and how many phylogeographic metrics in islands are likely shaped by long-term gene flow. The final two …

New Records Of Mesobuthus Rakhshanii Barahoei, 2022 In Iran (Scorpiones: Buthidae), Ersen A. Yağmur, Zhale Baghernavesi, Zahra Taherkhani, Parsa Akbari, Mohammad Moradi

Euscorpius

Mesobuthus rakhshanii Barahoei, 2022 (Scorpiones: Buthidae) was so far known only from the type locality in Sistan and Baluchestan Province, Iran. We give a list of numerous new records of this species from the same province. A map and detailed illustrations are provided.

Random-Effects Substitution Models For Phylogenetics Via Scalable Gradient Approximations, A. F. Magee, A. J. Holbrook, J. E. Pekar, Itzue W. Caviedes-Solis, F. A. Matsen Iv, G. Baele, J. O. Wertheim, X. Ji, P. Lemey, M. A. Suchard

Biology Faculty Works

Phylogenetic and discrete-trait evolutionary inference depend heavily on an appropriate characterization of the underlying character substitution process. In this paper, we present random-effects substitution models that extend common continuous-time Markov chain models into a richer class of processes capable of capturing a wider variety of substitution dynamics. As these random-effects substitution models often require many more parameters than their usual counterparts, inference can be both statistically and computationally challenging. Thus, we also propose an efficient approach to compute an approximation to the gradient of the data likelihood with respect to all unknown substitution model parameters. We demonstrate that this approximate …

Cross-Pollination: Building A Co-Taught Course To Examine Art And Sex Through The Lens Of Botany, Christopher T. Martine, Diamanda A. Zizis, Anna K. Kell

Faculty Journal Articles

Driven by overlapping interests in plants, art, and diversity in sex expression, Anna Kell (Department of Art and Art History) and Chris Martine (Department of Biology) developed a course that integrates the perspectives of a visual artist and a botanist. Art & Sex Through the Lens of Botany seeks to impart the importance of making connections across disciplines and the value of visual literacy across academic lines. The course introduces foundational concepts in each field and encourages students to integrate and explore these different systems of knowledge and their intersections. In addition to developing fluencies related to both general botany …

Examining Population Structure Of Cismontane And Desert Populations Of Zebra-Tailed Lizards (Callisaurus Draconoides) Using Mitochondrial And Nuclear Intron Dna., Lauren Nicole Morrison

Electronic Theses, Projects, and Dissertations

Callisaurus draconoides, also known as the Zebra-Tailed lizard, belongs to the family Phrynosomatidae family (Pianka, et al. 1972). C. draconoides is a widespread desert lizard found western North America. In California, this species can be found in the Mojave and Colorado Deserts. There are currently several populations that reside in the San Bernardino basin on the cismontane side of the Transverse and Peninsular ranges. These mountain ranges have the potential to have isolated the cismontane populations from their typical desert ranges. In addition, geological passes have the potential to serve as migration corridor between the Deserts and cismontane regions. The …

Connecting Genotype And Phenotype: Investigating The Functional Morphology And Molecular Architecture That Influences Craniofacial Divergence Using Lake Malawi Cichlid Fishes, Leah Delorenzo

All Dissertations

Connecting genotype and phenotype to better understand how species evolve has been a goal of evolutionary developmental biologists over the last 50 years. This dissertation aims to connect genotype and phenotype of the craniofacial skeleton within the adaptive radiation of Lake Malawi cichlids to fortify our understanding of the functional, genetic, and epigenetic factors that contribute to craniofacial divergence. I start with a functional approach using 2D geometric morphometrics to assess craniofacial shape across the Lake Malawi cichlid radiation to bolster our knowledge of the bone phenotypes that are important to niche specialization and are functionally relevant. Next, I use …

New Records Of Mesobuthus Mesopotamicus (Penther, 1912) In Iraq And Mesobuthus Faiki Sp. Nov. From Turkey (Scorpiones: Buthidae), Ersen A. Yağmur, František Kovařík, Victor Fet, Ridvan Kurt, Fenik S. Hussen, Azhar M. Al-Khazali, Hamid S. Kachel, Ali A. Al-Fanharawi

Euscorpius

New locality records for Mesobuthus mesopotamicus (Penther, 1912) are given from Iraq. The populations from southeastern Turkey, earlier identified as M. mesopotamicus by Kovařík et al. (2022), are examined and compared with the specimens from the area close to the type locality of M. mesopotamicus. These populations are described as a new species, Mesobuthus faiki sp. nov. Detailed illustrations of both species and a map are given.

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xxxii. Barbaracurus Hofereki Sp. N. From Djibouti, František Kovařík

Euscorpius

Barbaracurus hofereki sp. n. from Djibouti is described and compared with other species of the genus. B. hofereki sp. n. is the only species of the genus with pedipalp movable finger with 8 rows of granules and pectinal tooth count 27–28 in female. Also, its pedipalp chela with very narrow manus (chela length/width ratio 6.07 in female), narrower than in all other African species of the genus. A map of the distribution of the genus in the Horn of Africa and the Arabian Peninsula is provided.

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones) Part Xxxi. Two New Genera From Somaliland: Sanaag Gen. N. And Sahil Gen. N. (Buthidae), František Kovařík

Euscorpius

Two new monotypic buthid genera are described: Sanaag gen. n. and Sahil gen. n. from Somaliland, both belonging to the ‘Buthus’ group. Sanaag gen. n. (type species Gint maidensis Kovařík et al., 2018) differs from Gint Kovařík et al., 2013 in the structure of its hemispermatophore, which has a large, tall, subtriangular hook-like basal lobe, and in the shape of its telson which is rather bulbous. Sahil gen. n. (type species Sahil elmii sp. n.) differs from all morphologically similar small-sized genera of the Horn of Africa in having the ventral aspect of cheliceral fixed finger with two denticles, …

Does Behavior Evolve First? Correlated Responses To Selection For Voluntary Wheel-Running Behavior In House Mice, Rahim H. Khan, Justin S. Rhodes, Isabelle A. Girard, Nicole E. Schwartz, Theodore Garland Jr.

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

How traits at multiple levels of biological organization evolve in a correlated fashion in response to directional selection is poorly understood, but two popular models are the very general “behavior evolves first” (BEF) hypothesis and the more specific “morphology-performance-behavior-fitness” (MPBF) paradigm. Both acknowledge that selection often acts relatively directly on behavior and that when behavior evolves, other traits will as well but most with some lag. However, this proposition is exceedingly difficult to test in nature. Therefore, we studied correlated responses in the high-runner (HR) mouse selection experiment, in which four replicate lines have been bred for voluntary wheel-running behavior …

Reproductive Characteristics Of The Stripetail Darter (Etheostoma Kennicotti) Relative To Monogenean Gill Parasite Infection In Estill Fork In North Alabama, Joy L. Garcia, Zeina Celine Sleiman, Corinne N. Preacher, Bruce Stallsmith

Southeastern Fishes Council Proceedings

What relationship exists between Aethycteron sp. gill parasite infection and the reproductive characteristics of stripetail darters, Etheostoma kennicotti? 450 E. kennicotti were collected over 11 months from Estill Fork in Jackson County, Alabama. Gonads were removed and photographed. All oocytes were counted and then classified into one of four developmental stages based on size and appearance. Gill parasites belonging to the monogenean genus Aethycteron were excised, photographed, and counted. Sexual dimorphism in length and mass was observed in E. kennicotti. The number of males found at the 25> mm SL range far outnumbered the females while almost all …

The Descent Of Anolis: Assemblages, Convergence, And Ecomorphological Evolution, Christopher G. Anderson

Biology ETDs

The evolutionary outcomes we observe in modern organisms, particularly associations between phenotypes and environments, have been and remain an invaluable tool in interpreting the biological phenomena that shape our world. In the following chapters, I leverage a comprehensive phylogenetic and morphological dataset for 351 species comprising a diverse group of arboreal lizards, the Anolis clade, to explore how communities and morphologies evolve. First, I characterized patterns among coexisting lineages of Anolis to reveal a general pattern of phylogenetic relatedness among lineages comprising assemblages and identify differences attributable to a biogeographic variable. Then I examined the morphological consequences associated with the …

An Ecology Against The Right. Learning Uncertainty And Humility From Ecosystems, Pierre L. Ibisch, Mona Eikel-Pohen, Elias Iceman, Jake Snelling

Languages, Literatures, and Linguistics - All Scholarship

This article is a translation from the German to English. The title of the original is:

Ibisch, P.L. (2020): Eine Ökologie gegen rechts. Von Ökosystemen Unsicherheit und Demut lernen. In: Leitschuh, H., A. Brunnengräber, P.L. Ibisch, R. Loske, M. Müller, J. Sommer & E.-U. v. Weizsäcker (eds. J. Sommer, P.L. Ibisch, A. Brunnengräber): Ökologie und Heimat. Jahrbuch Ökologie 2021. Hirzel-Verlag, Stuttgart, 191-205.

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xxx. Parabuthus (Buthidae) (Part Iii), With Description Of Three New Species From Somaliland And Occurrence Of Parabuthus Eritreaensis Kovařík, 2003, František Kovařík, Graeme Lowe, Hassan Sh A. Elmi, František Šťáhlavský

Euscorpius

A new record of an adult female of Parabuthus eritreaensis Kovařík, 2003 in Somaliland confirms true distribution of this species, already discussed in Kovařík et al. (2016: 19–21). Three new species are described from Somaliland, P. dorisae sp. n., P. evae sp. n., and P. quincyae sp. n.. The hemispermatophore of P. dorisae sp. n. is illustrated and described. In addition to the analyses of external morphology and hemispermatophore, we have provided descriptions of the karyotypes of P. dorisae sp. n. and P. quincyae sp. n. Despite the presence of multivalents (CVIII and CXIV), both species exhibit karyotypes with 2n=16 …

Teaching Evolutionary Principles With Ai Image Generators, Jacqueline Garnett

Generative AI Teaching Activities

The purpose of this assignment is for students to practice constructing phylogenies using the principle of parsimony. In this activity, students will use an AI Image Generator to create a grid of images of the same organism and identify a series of traits that vary to build a possible phylogenetic tree.

Alfred Russel Wallace Notes 30. Wallace A Theist? Part I., Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace (1823−1913) has been portrayed as a ‘theist’ on a large number of occasions from his own time on to the present. In this, the first of a two part work, this assessment is questioned. In part one, the matter of Wallace’s personal philosophy and spiritual orientation is explored, the conclusion being that Wallace was a lifelong agnostic who can hardly be aligned with theism.

Species Delimitation Of Slimy Salamanders, Plethodon Kisatchie And Plethodon Mississippi, Across The Lower Mississippi River, Brock Hunter Stevenson

Master's Theses

Species are fundamental units of biodiversity yet delimiting species can be challenging. Slimy Salamanders of the Plethodon glutinosus species complex are a classic example of cryptic species for which species boundaries and relationships have proved difficult to determine. Once thought to be a single species ranging across the eastern United States, protein analysis revealed high genetic divergences among geographically distinct groups of populations, leading to 16 species being recognized within the group. Two of these species, the Louisiana Slimy Salamander (Plethodon kisatchie) and the Mississippi Slimy Salamander (Plethodon mississippi), are closely related but occur on opposite sides of the Mississippi …

In Memoriam Richard F. Ayrey (1948 – 2024), Melinda Deboer-Ayrey, Brandon T. Myers, Robert W. Bryson, Jr., Michael M. Webber, Matthew R. Graham, Graeme Lowe, Victor Fet, František Kovařík

Euscorpius

This is a memorial issue honoring Richard F. Ayrey (1948 – 2024), a US scorpiologist. A full list of his 26 works is appended, as well as a list of scorpion taxa described by Richard (two genera and 19 species of Vaejovidae), and a map of their type localities in the USA and Mexico.

Revision Of The Genus Olivierus In Xinjiang, China, With Comments On Mesobuthus Thersites (Scorpiones: Buthidae), Victoria Tang, Zhenbang Liu, Matthew R. Graham, Victor Fet, František Kovařík, František Šťáhlavský

Euscorpius

The genus Olivierus Farzanpay, 1987 in Xinjiang Uygur Autonomous Region, China, is revised based on recently collected topotypes and other populations from 12 localities. Brief differential diagnoses are provided, with colored illustrations and photos in vivo habitus, emphasizing the key characters. Chinese appellations, conservation status, and documentation of behavior and post-envenomation symptoms are also included. Only two species are now recognized for this genus in Xinjiang: O. longichelus (Sun & Zhu, 2010) and O. przewalskii (Birula, 1897), based on both morphological and molecular evidence. The two species exhibit extensive distribution in Xinjiang (China) while also occurring in adjacent countries. Three …

Adaptive Evolution Of Surface Proteins In Microbial Pathogens: Lyme Disease Pathogens (Borreliella Sp.) And Human Immunodeficiency Virus Type 1 (Hiv-1), Li Li

Dissertations, Theses, and Capstone Projects

Cell and virion surface proteins are key to the survival and adaptation of microbial pathogens by enabling them to evade host immune responses and to persist in diverse environments. Pathogens respond to host immune pressures with genetic changes in surface proteins through mechanisms including point mutations, recombination, gene duplication and loss, and lateral gene transfer, resulting in novel antigenic variants and antigenic diversity. This continuous adaptation helps pathogens evade host immunity, leading to chronic infections and recurrent disease outbreaks. Understanding these mechanisms is vital for developing effective strategies to combat infectious diseases.

This dissertation comprises three chapters exploring the adaptive …

Avian Symbionts Of Sulawesi: Identifying And Correlating Malaria Parasites And The Microbiome In Communities Of Endemic Avian Hosts, Rachael Joakim

Dissertations, Theses, and Capstone Projects

Since the evolution of complex organisms, there have been communities of symbionts inhabiting them. Thanks to the development of parallel sequencing techniques, DNA of entire microbial communities can be sequenced from a single sample. Some microbes can be parasitic in nature, such as Haemosporida, an order of eukaryotes causing malaria. While most symbionts form a more commensal host relationship in wild systems, host-symbiont dynamics can vary in pathogenicity based on biotic and abiotic factors. In vertebrates, microbial communities in the gut play a major role in host function, including immune responses to Haemosporida. Though this relationship is most commonly explored …

The Influence Of Incubation Temperature On Offspring Traits Varies Across Northern And Southern Populations Of The American Alligator (Alligator Mississippiensis), Christopher R Smaga, Samantha L Bock, Josiah M Johnson, Thomas Rainwater, Randeep Singh, Vincent Deem, Andrew Letter, Arnold Brunell, Benjamin B Parrott

Faculty, Staff and Student Publications

Maternal provisioning and the developmental environment are fundamental determinants of offspring traits, particularly in oviparous species. However, the extent to which embryonic responses to these factors differ across populations to drive phenotypic variation is not well understood. Here, we examine the contributions of maternal provisioning and incubation temperature to hatchling morphological and metabolic traits across four populations of the American alligator (Alligator mississippiensis), encompassing a large portion of the species' latitudinal range. Our results show that whereas the influence of egg mass is generally consistent across populations, responses to incubation temperature show population-level variation in several traits, including …