Ecology and Evolutionary Biology Commons^™

Description Of Sivalhippus (Equidae: Perissodactyla) From The Late Miocene Siwalik Sub-Group Of Pakistan, Muhammad Tahir Waseem, Ayesha Iqbal, Sania Zubaid, Abdul Majid Khan, Muhammad Ammar

Journal of Bioresource Management

New fossil mandible as well as isolated upper and lower dentitions of the late Miocene Hipparionine species, have been discovered from a locality of Chakwal, Punjab, Pakistan. By using morphometric and morphologic analysis, we have deduced that these specimens belong to Sivalhippus theobaldi. The body size of this species was intermediate between Sivalhippus perimensis and Hipparion antilopinum while its hypsodonty indicates that this species was a grazer to a larger extent which existed in mosaic of woodland and grassland in the Latest Miocene. However, the comparison with the recent horse (Equus caballus) mandible indicates some differences in …

Adaptation Reshapes The Distribution Of Fitness Effects, Diego Tenoch Morales Lopez

Electronic Thesis and Dissertation Repository

The process of adaptation has been of interest since the XIX century, when Darwin first proposed the idea of natural selection. Since then, there has been a myriad of theoretical and empirical works that have expanded the field. From the many evolutionary insights these works have produced, a foundational idea is that spontaneous mutations in the genome of organisms can produce changes to their reproductive success that might confer an advantage for the mutant organisms with respect to their peers. Therefore, mutations drive adaptive evolution by virtue of their heritable effects on fitness. Empirical measures of the distribution of these …

On Some Teratological Scorpions In The Natural History Museum, London And Checklist Of The Scorpiological Literature On Morphological Anomalies (Arachnida: Scorpiones), Danniella Sherwood, Luis F. De Armas

Euscorpius

Whilst undertaking curation in the collections of the Natural History Museum, London, the senior author came across a jar of scorpions marked ‘scorpions with curled feet’. Further investigation showed this jar was full of scorpions with teratological anatomy. We hereby document and illustrate all of the specimens and discuss their respective anomalies. Furthermore, a comprehensive checklist of the literature on anomalies in scorpions, including giving the life stage and sex where known, is compiled for the benefit of future workers.

Lizard Communities In A Shifting Landscape: The Current State Of Insectivorous Lizard Communities In The Jornada Basin Between Grassland, Mesquite Dune, And Creosote Bush Habitats In A Semi-Arid Landscape Undergoing Shrubification, Julie Marie Schlichte

Open Access Theses & Dissertations

Lizard communities in arid lands can act as model systems of how diversity and abundance are impacted in the face of ongoing climate variability and change, as they are sensitive to shifts in precipitation, temperature, and changing vegetation structure. The main research question we hope to answer is how the community composition of lizards varies between dominant vegetation types (Mesquite dunes, grasslands, and Creosote Bush flats). Nine sites (3 of each dominant vegetation type) with 16 pitfall traps each (n = 144) were surveyed from June 2016 -- June 2017. 12 lizard species were captured, consisting of 923 total captures …

Activity Patterns Of Whiptail Lizards (Aspidoscelis) Found In The Northern Chihuahuan Desert, Guillermo Alvarez

Open Access Theses & Dissertations

Traditional lizard pitfall traps were modified to allow organisms to escape, while collecting valuable ecological data. Modified camera traps were capable of detecting the same species as traditional traps in a semi-arid environment, without posing the associated mortality risks. Pitfall-camera traps were used to sample the activity of the Side-blotched Lizard (Uta stansburiana) and the Southwestern Fence Lizard (Sceloporus cowlesi) in an urban wetland during four continuous years. Evaluations on activity pattern and the activity overlap between the two species revealed extensive overlap, with minor but significant seasonal shifts mediating coexistence. Traps were also effective at detecting other reptiles, invertebrates, …

Breaking Virulent: The Coincidental Evolution Of Virulence Factors In Bacteria., Rhiannon Emmanuelle Cecil

Electronic Theses and Dissertations

Understanding how innocuous organisms can evolve to be pathogenic to humans is of increasing global concern. Further, understanding how existing pathogens may evolved to be more virulent is also vital to our ability to provide healthcare to people afflicted with diseases that promote chronic bacterial infections, such as cystic fibrosis. With the rise of antibiotic resistance in both bacteria and fungi it is paramount that new therapeutics are identified. Understanding what mutations occur that result in increased virulence in microbes can potentially provide new targets for antimicrobial drugs to combat antibiotic resistance. The Coincidental Evolution Hypothesis is a fundamental hypothesis …

Evolution Of Forest Bitis (Macrocerastes) In Africa: Phylogeography, Population Genetics, And Potential As A Model For Batesian Mimicry, Eugene Richard Vaughan

Open Access Theses & Dissertations

The major biogeographical patterns characterizing the diversification of widely distributed species in the African rainforest remain poorly understood because of the low number of well-sampled studies that are focused on this region. I examine the phylogeography and population genetics of two broadly sympatric sister lineages of large African forest vipers (genus Bitis, subgenus Macrocerastes), the rhinoceros viper (B. nasicornis) and the Gaboon vipers (B. gabonica and B. rhinoceros). Despite their close relationship, these two lineages have notably different patterns of divergence in time and space. A time-calibrated phylogeny with sequence data from five genes, and population structure and PCA analyses …

Assessment Of Green Spaces In Metro Nashville Public High Schools, Webster G. Andrews, Anna Lennon, Darlene Panvini

Science University Research Symposium (SURS)

Green spaces on and near school property have been correlated to student mental health and academic achievement. However, there is a gap in the literature investigating how quality and quantity of green space is related to socioeconomic status and school economic metrics in public high schools and the surrounding neighborhoods. Nashville public high schools located in higher socioeconomic areas and having greater financial resources were predicted to provide larger, higher quality green spaces. This study combined a quantitative analysis of neighborhood socioeconomic metrics, school socioeconomic metrics, and quantity of green space (assessed using iTree Canopy) with a qualitative field assessment …

Culled Lionfish Sexual Maturity Over A Four-Year Timespan​, Christina Bland, Jurgen Hauer, Bilal Saleem, Noelle James

Symposium of Student Scholars

Lionfish are invasive in the Atlantic and the Caribbean. Like many other invasive species, they do not have any natural predators in these areas, so their population can grow unchecked. This can decrease the population of native fish species due to lionfish eating to excess. Because of their impact on native species, resource managers have incentivized lionfish hunting. Hunters were paid $6 USD for every pound of lionfish they brought in, so they possibly favored larger lionfish to increase their reward which would lead to an adaptive advantage for fish of smaller sizes. We hypothesized that the lionfish bounty program …

Twelve Wallace Myths, Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace’s (1823-1913) bicentennial year is a good time to take stock. In this presentation I discuss twelve Wallace-related issues that I feel have been poorly taken up. These range from the biological to the biographical, including subjects such as social criticism, human evolution, autobiographical memory, natural selection, national affinities, spiritualism, and wokeism.

Fusion Of Pectinal Teeth In Scorpio Kruglovi Birula, 1910 (Scorpiones: Scorpionidae), Ersen A. Yağmur, Gülhanım Yağmur

Euscorpius

A rare teratological anomaly of pecten is described and illustrated: a case of fusion in pectinal teeth in the scorpion Scorpio kruglovi Birula, 1910). It was observed that 7th and 8th teeth are fused in the right pecten. The resulting fused tooth is larger than other teeth. A smaller fulcrum located inside of the large, fused tooth whereas other fulcra are located between normally developed teeth.

The Discovery Of A Novel Bacteria From A Large Co-Assembly Of Metagenomes, Matthew Finkelberg

Masters Theses

In the summer of 2022, a co-assembly of metagenome was created using the microbes found at Barres Woods in Harvard Forest. 14 samples were taken, and sample was split into the organic and mineral layer, which totals 28 Bulk MAGs. Within this Co-assembly, 4 different genomes were found which were designated with the phylum of FCPU426. Three of which were considered medium quality and one being assigned high quality. The novel phyla first appeared in NCBI and GTDB databases in June 2018. The name FCPU426 dates to 2010 and was named based on the 16s amplicon sequencing.

The novel phylum …

Brown Anole (Anolis Sagrei) Hoxa5: Insights Into The Divergence Of Hoxa5 Gene Expression And Regulation Across Evolutionarily Divergent Gnathostome Vertebrates, Jennifer A. Lange, Amber L. Rittgers, Adam Davis

Georgia Journal of Science

Hox genes are evolutionarily conserved developmental regulatory genes that function, in part, to pattern the anterior-posterior (AP) axis of organs and organ systems during animal embryonic development. Hoxa5, specifically, is shown to be expressed in the spinal cord, somites, or transient compartments giving rise to the vertebrae and ribs, developing gut, lungs, and limbs of the mouse (Mus musculus). The cis-regulatory elements (CREs), or short DNA sequences, that direct Hoxa5 expression in these embryonic domains have been mapped and functionally tested in the mouse as well. Similar Hoxa5 expression patterns have been observed in chicken ( …

Msis-Glenn: Natural Selection In Wolves Leads To Domesticated Dogs Predicted By Agent-Based Model Simulations, Alex Capaldi, David C. Elzinga

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Msis-Udiani: Tactics And Trade-Offs: The Evolution Of Host Resource Provisioning In Microbiome Management, Oyita Udiani, Nina Fefferman

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Alfred Russel Wallace Notes 28. Wallace's 'Change Of Mind', Revisited, Charles H. Smith

Faculty/Staff Personal Papers

Alfred Russel Wallace (1823−1913) is best known for his work on the theory of evolution by natural selection, and studies on biogeography. This fame has not, however, prevented appraisals of his work that sometimes depart from rational interpretations of his actual words. In this study, the frequently-offered notion that his adoption of spiritualism in late 1866 caused him to reverse himself on the universality of natural selection is taken to task, with arguments linked to his own words on the subject.

Tracing Evolution Of Gene Transfer Agents Using Comparative Genomics, Roman Kogay

Dartmouth College Ph.D Dissertations

The accumulating evidence suggest that viruses and their components can be domesticated by their hosts, equipping them with convenient molecular toolkits for various functions. One of such domesticated system is Gene Transfer Agents (GTAs) that are produced by some bacteria and archaea. GTAs morphologically resemble small phage-like particles and contain random fragments of their host genome. They are produced only by a small fraction of the microbial population and are released through a lysis of the host cell. Bioinformatic analyses suggest that GTAs are especially abundant in the taxonomic class of Alphaproteobacteria, where they are vertically inherited and evolve …

Book Review: Habitantes De La Obscuridad (Fauna Ibero-Balear De Las Cuevas) – Inhabitants Of The Darkness (Ibero-Baleric Fauna Of Caves), Oana Teodora Moldovan

International Journal of Speleology

NA

Alfred Russel Wallace Notes 27. When Wallace Broke With Darwin., Charles H. Smith

Faculty/Staff Personal Papers

The year 1866 was the first year Alfred Russel Wallace showed definite signs of breaking with Darwin over the limits of natural selection. Attention is drawn to a July 1866 exchange of letters between the two, and how this foreshadowed what followed.

The First Record Of Orthochirus Glabrifrons (Kraepelin, 1903) (Scorpiones: Buthidae) From The United Arab Emirates, František Kovařík, Ersen A. Yağmur, Alexander Ullrich, Balázs Buzás

Euscorpius

Orthochirus glabrifrons (Kraepelin, 1903) (Scorpiones: Buthidae) was described from Oman (Muscat). Here, we summarize known localities from Oman as well as records from the United Arab Emirates, which is the new country record for this species. Illustrations of morphology of both sexes are given together with a map of distribution. A lectotype of Orthochirus glabrifrons (Kraepelin, 1903) is designated. Paraorthochirus kaspareki Lourenço & Huber, 2000 and Paraorthochirus kinzelbachi Lourenço & Huber, 2000 are synonymized with Orthochirus glabrifrons (Kraepelin, 1903), syn. n.

In Memoriam Rolando Teruel Ochoa (1974 – 2023), Luis F. De Armas, Sheyla Yong

Euscorpius

This is an obituary of Rolando Teruel Ochoa (1974–2023), a great Cuban arachnologist. A full list of his works is appended, as well as a list of scorpions and other arachnids described by Rolando.

Description Of The Adult Male Scorpiops Tongtongi Tang, 2022, With Further Comments On The Genus Scorpiops Peters, 1861 In China (Scorpiones: Scorpiopidae), Victoria Tang

Euscorpius

Adult male Scorpiops tongtongi Tang, 2022 is described based on recently collected specimens, which revealed a strong sexual dimorphism in the pedipalp finger lobe of this species (present in males, absent in females), lending more support to the separation from its geographic neighbors, S. jendeki Kovařík, 1994, S. shidian (Qi et al., 2005), S. zhangshuyuani Ythier, 2019, and S. beccaloniae (Kovařík, 2005). The morphological studies of Chinese Scorpiops are further discussed. A refined mensurational method of Scorpiops pedipalp chela is proposed. Morphological comparisons of both quantitative and qualitative characters for all Scorpiops from Yunnan are provided, along with a dichotomous …

Population Genomics, Ecology And Conservation Of Asterias Sea Stars In The North Atlantic, Melenia I. Giakoumis

Dissertations, Theses, and Capstone Projects

Uncovering how species respond to environmental change is a central question in biology (Ehrlén & Morris 2015; Habibullah et al. 2022). It is the key to elucidating the past, understanding the present and predicting the future of species’ population dynamics. This dissertation investigates the influence of environmental change on intertidal species’ distributions and genomics at several timescales, with implications for conservation.

Environmental changes have occurred throughout history, on a geological scale, and have shaped the global patterns of species’ distributions and population sizes. Biologists have long studied how geological history has shaped species distributions (Sanmartín 2012) in both terrestrial (Liu …

Genetic Effects Of Anthropogenic Disturbance On Native Charrs, Brad Erdman

Electronic Theses and Dissertations

Artificial propagation has been utilized for over a century to offset anthropogenic declines of abundance for many fishes. Complex and poorly documented histories of habitat degradation and stockings have resulted in considerable uncertainty regarding whether contemporary populations are of native, hatchery, or mixed origins. This uncertainty is problematic as it precludes prioritizing the conservation of native populations that are postulated to possess local adaptations and greater evolutionary potential. Population genetics can assess the relative reproductive contributions of previous stocking events and in this dissertation I apply these methods to four empirical studies of native charr (genus Salvelinus) that have …

Evolution Of Overlapping Reading Frames In Virus Genomes, Laura Muñoz Baena

Electronic Thesis and Dissertation Repository

Viruses are formidable pathogens that represent the majority of biological entities in our planet, and their genomes are a source of interesting enigmas. One feature in which virus genomes are usually rich, is the presence of overlapping reading frames (OvRFs) — portions of the genome where the same nucleotide sequence encodes more than one protein. OvRFs are hypothesized to be used by viruses to encode proteins more compactly and to regulate transcription. In addition, OvRFs might be a source of gene novelty, facilitating the creation of new open reading frames (ORF) within the transcriptional context of existing ones.

To characterize …

Euscorpius Sulfur Sp. N. (Scorpiones: Euscorpiidae), A New Cave Scorpion From Albania And Northwestern Greece, František Kovařík, Marek Audy, Serban M. Sarbu, Victor Fet

Euscorpius

A new species of cave scorpion, Euscorpius sulfur sp. n. (Scorpiones: Euscorpiidae) from Albania and northwestern Greece is described, fully complemented with color photographs of both live and preserved specimens, as well as their habitats.

Geometric Morphometric Analysis Of Modern Viperid Vertebrae Facilitates Identification Of Fossil Specimens, Lance D. Jessee

Electronic Theses and Dissertations

Snake vertebrae are common in the fossil record, whereas cranial remains are generally fragile and rare. Consequently, vertebrae are the most commonly studied fossil element of snakes. However, identification of snake vertebrae can be problematic due to extensive variation. This study utilizes 2-D geometric morphometrics and canonical variates analysis to 1) reveal variation between genera and species and 2) classify vertebrae of modern and fossil eastern North American Agkistrodon and Crotalus. The results show that vertebrae of Agkistrodon and Crotalus can reliably be classified to genus and species using these methods. Based on the statistical analyses, four of the …

Resolving The Paradox Of Polyploidy: Underexplored Facets Of Polyploid Plants, Benjamin Gerstner

Biology ETDs

Polyploidy, or whole genome duplication, is a common phenomenon in plants, but the establishment and persistence of mixed-ploidy populations remains a paradox. This dissertation explores factors that contribute to the persistence and establishment of mixed-ploidy populations in nature. The first chapter investigates the role of unreduced gametes in neopolyploid establishment and finds that variability in their formation rate can have a significant impact on polyploid establishment and persistence. The second chapter searches for evidence of soil microbes exhibiting ploidy-specificity, a pre-condition for microbe-mediated niche differentiation, a possible stabilizing mechanism contributing to ploidy coexistence. Finally, the third chapter tests for microbe-mediated …

Sequestered Sequences: A Bioinformatic Approach To The Forgotten Genome, Dylan Barth

UNLV Theses, Dissertations, Professional Papers, and Capstones

As high throughput sequencing generates ever increasing amounts of genetic and epigenetic data new lines of inquiry open up in the field of genomic research. In this thesis, we discuss three ways in which we can utilize public databases of next generation genomic data in order to study areas of the genome previously ignored by traditional approaches. These include the study of linker regions between domains of proteins, indirect enhancers that do not strongly contact promoters of genes they regulate, and transposon-derived enhancer elements. The work uncovers many exceptions to known biological principles, and adds nuance to our understanding of …

New Species Of Dryolestoid From The Late Cretaceous Allen Formation And Implications For South American Faunal Diversity., Brigid Erin Connelly

Electronic Theses and Dissertations

Dryolestoids are extinct cladotherians mammals from the Jurassic and Cretaceous periods. I describe a collection of dryolestoid specimens from the Late Cretaceous localities of Cerro Tortuga (Allen Formation), Anfiteatro 1, and Shining (both La Colonia Formation) from Patagonia, Argentina. Using comparative morphology, I identify a new species of meridiolestidan dryolestoid based on eleven specimens across both formations. The new species’ recovery from La Colonia Formation represents the first dryolestoid connection between the two approximately contemporaneous formations. The species’ morphology may represent an ecological shift within Meridiolestida from insectivory to herbivory, showing a transition in characters between the plesiomorphic sharp-toothed meridiolestidans …