Ecology and Evolutionary Biology Commons^™

Intra And Interhost Dynamics Shaping Arbovirus Adaptation And Evolution, Alexander T. Ciota

Legacy Theses & Dissertations (2009 - 2024)

Arthropod-borne viruses (arboviruses), which are predominately mosquito-borne and almost exclusively RNA viruses, are maintained in nature in complex transmission cycles involving blood sucking invertebrates and vertebrate hosts. Although over 120 arboviruses are human pathogens responsible for causing a significant and expanding global health burden, a detailed understanding of the complex interactions between these pathogens and their hosts, particularly invertebrate hosts, is lacking. Defining these interactions is necessary if we are to understand the selective pressures and, therefore, evolutionary, adaptive, and epidemiological potential of arboviruses. This requires experimental infection and evolution studies, particularly in vivo, with natural hosts. The results presented …

The Sign And Strength Of Plant-Soil Feedback For The Invasive Shrub, Lonicera Maackii, Varies In Different Soils, Kelly Schradin, Don Cipollini

Biological Sciences Faculty Publications

Plants alter soil characteristics causing changes in their subsequent growth resulting in positive or negative feedback on both their own fitness and that of other plants. In a greenhouse study, we investigated whether the sign and strength of feedback changed across two distinct soil types, and whether effects were due to shifts in biotic or abiotic soil traits. Using soils from two different locations, we examined growth of the exotic invasive shrub, Lonicera maackii and the related native shrub, Diervilla lonicera, in unconditioned soils and in soils conditioned by previous growth of L. maackii, D. lonicera, and …

A Generalized Cholera Model And Epidemic-Endemic Analysis, Jin Wang, Shu Liao

Mathematics & Statistics Faculty Publications

The transmission of cholera involves both human-to-human and environment-to-human pathways that complicate its dynamics. In this paper, we present a new and unified deterministic model that incorporates a general incidence rate and a general formulation of the pathogen concentration to analyse the dynamics of cholera. Particularly, this work unifies many existing cholera models proposed by different authors. We conduct equilibrium analysis to carefully study the complex epidemic and endemic behaviour of the disease. Our results show that despite the incorporation of the environmental component, there exists a forward transcritical bifurcation at R₀ = 1 for the combined human-environment epidemiological …

Consequences Of Kleptoplasty On The Distribution, Ecology, And Behavior Of The Sacoglossan Sea Slug, Elysia Clarki, Michael Louis Middlebrooks

USF Tampa Graduate Theses and Dissertations

The sacoglossan sea slug Elysia clarki is able to photosynthesize for three to four months using chloroplasts sequestered from its algal food sources. Furthermore, the slug is able to store multiple chloroplasts from different algal species within the same cell. This research, consisting of several related studies, explores the role that provision of organic nutrients via photosynthesis plays in the biology of the slug. The first chapter demonstrates that, under conditions of starvation, photosynthetic activity in E. clarki remains fully functional for one month after which it then declines. During the first month of starvation the slug exhibits similar feeding …

Use Of Adventitious Roots For The Determination Of Hydroperiod In Isolated Wetlands, Michael Joseph Reyes

USF Tampa Graduate Theses and Dissertations

Abstract

Accurate measurement of the hydroperiod in isolated wetlands currently relies upon the installation and frequent monitoring of devices such as piezometers and staff gauges. Observations of biological indicators of the hydroperiod may be able to supplement data collected from these devices and could potentially replace them as a means of accurately determining this hydrologic interval. The study objective was to determine whether adventitious root formation and maturation on buttonbush (Cephalanthus occidentalis) could be used as a viable indicator of the hydroperiod in isolated wetlands. Buttonbush seedlings were flooded in a controlled environment over a three month period in the …

Annual Variation In Timing, Orientation And Effects Of Weather On Jefferson Salamander (Ambystoma Jeffersonianum) And Spotted Salamander (Ambystoma Maculatum) Movements In Central Kentucky, Christopher James St. Andre

Online Theses and Dissertations

Annual variation in temporal and spatial patterns of amphibian migration and dispersal are poorly understood. To address this issue, a circular drift fence was installed around an ephemeral pond at the Central Kentucky Wildlife Management Area, Madison County, Kentucky. The pond was checked daily for salamander movements from 17 January 2010 to 26 September 2010 and from 26 January 2011 to 3 August 2011, which corresponded to the activity season. Weather variables examined in relation to amphibian movements included barometric pressure, cumulative precipitation, temperature and relative humidity. Several species used the ephemeral pond during the study but few successfully reproduced. …

Patterns Of Extinction Risk And Threat For Marine Vertebrates And Habitat-Forming Species In The Tropical Eastern Pacific, Beth A. Polidoro, T. Brooks, Kent E. Carpenter, G. J. Edgar, S Henderson, J. Sanciangco, D. R. Robertson

Biological Sciences Faculty Publications

Marine conservation activities around the globe are largely undertaken in the absence of comprehensive species-specific information. To address this gap, complete regional species assemblages of major marine taxa are being progressively assessed against the Categories and Criteria of the International Union for the Conservation of Nature (IUCN) Red List of Threatened Species. The present study is the first analysis of entire major components of the biota of a large marine biogeographic region conducted in the Tropical Eastern Pacific (TEP). It is based on recently completed IUCN Red List assessments for all known species of bony and cartilaginous shorefishes, corals, mangroves, …

Biophysics, Environmental Stochasticity, And The Evolution Of Thermal Safety Margins In Intertidal Limpets, W. Wesley Dowd, M. W. Denny

Biology Faculty Works

As the air temperature of the Earth rises, ecological relationships within a community might shift, in part due to differences in the thermal physiology of species. Prediction of these shifts – an urgent task for ecologists – will be complicated if thermal tolerance itself can rapidly evolve. Here, we employ a mechanistic approach to predict the potential for rapid evolution of thermal tolerance in the intertidal limpet Lottia gigantea. Using biophysical principles to predict body temperature as a function of the state of the environment, and an environmental bootstrap procedure to predict how the environment fluctuates through time, we create …

Influences Of Adjacent Land-Use On Avian Community Structure In Sub-Boreal Peatlands Of The Midwest, Lucas J. Wandrie

All Graduate Theses, Dissertations, and Other Capstone Projects

Surrounding land use influences avian community structure; moreover, anthropogenic manipulation of habitat can alter bird species richness and composition. In the first chapter of my thesis work, I conducted avian surveys at 20 sub-boreal peatlands in eastern Minnesota and western Wisconsin to detect correlations between land development and bird community structure. Peatlands are wetlands that accumulate decaying organic plant material (peat) and provide valuable and diverse habitats to a variety of flora and fauna. I measured urban and cropland development at three spatial scales (500 m, 1000 m, and 2500 m radii). Effects of development on avian communities also were …

Systematics Of Leptopelis (Anura: Arthroleptidae) From The Itombwe Plateau, Eastern Democratic Republic Of The Congo, Francisco Portillo

Open Access Theses & Dissertations

Leptopelis, a genus of Central African treefrogs, includes 51 species that live in tropical forests and savannas. Currently, only two species of Leptopelis are known from the poorly explored Itombwe Plateau in eastern Democratic Republic of the Congo (DRC). Itombwe is renowned among conservationists for its rich and endemic amphibian fauna, including: Xenopus itombwensis, Chrysobatrachus cupreonitens, Laurentophryne parkeri, Hyperolius leleupi and at least three species of Arthroleptis. Evolutionary relationships of Itombwe Leptopelis were examined by sequencing two mitochondrial genes (16S: 557 bp [base pairs], cyt b: 620 bp) and one nuclear gene (RAG1: 761 bp). Results recovered strong support for …

Spatial Ecology Of The Trans-Pecos Rat Snake (Bogertophis Subocularis) In The Chihuahuan Desert Of Trans-Pecos Texas, Arturo Rocha

Open Access Theses & Dissertations

The Trans-Pecos Rat Snake (Bogertophis subocularis) is a medium to large rat snake that occurs from south-central New Mexico, south-central Texas, down into the north-central and northeastern states of Mexico. There is paucity in the ecology of B. subocularis to date. Some North American colubrid snakes, such as Thamnophis sirtalis, are the most represented species in thermal ecology and life history studies in all reptiles. There is nothing known on the winter ecological aspects of this species, and very little information regarding its overall ecology. The goal of this study is to determine home range, movement patterns, habitats and utilization …

A New Species Of Frog (Strabomantidae: Pristimantis) From Peru With Comments On Its Ectoparasites (Acari: Trombiculidae), Alan W. Brus

Honors Projects

In South America, frogs of the genus Pristimantis are diverse and can be found from lowland forests to elevations of about 4000 m in the Andes. The 444 known species of Pristimantis belong to 16 species groups. One of these groups is the Pristimantis orestes Group, the 14 members of which inhabit the páramo, puna, and upper montane forests in southern Ecuador (3 species) and Peru (11 species). Species of the Pristimantis orestes Group are characterized by having snout-vent lengths ranging from 18.0 to 29.4 mm, short robust bodies, relatively short snouts, narrow digital discs, and areolate ventral skin. Some …

Brooding, Provisioning, And Compensatory Care In The Cooperatively Breeding Acorn Woodpecker, Walter D. Koenig, Eric L. Walters

Biological Sciences Faculty Publications

We analyzed reproductive investment in parental care (brooding and the provisioning of nestlings) in the acorn woodpecker (Melanerpes formicivorus), a cooperatively breeding species in which both polygynandry and helping-at-the-nest are common. As predicted based on the strategies pursued by birds of different sex and status, breeders generally invested more in parental care than helpers, and breeder females invested more than breeder males. Contrary to expectations, however, the degree to which individuals reduced their effort with increasing group size (i.e., patterns of load lightening or compensatory care) did not match overall investment. Instead, as group size increased, there was …

Global Change, Global Trade, And The Next Wave Of Plant Invasions, Bethany A. Bradley, Dana M. Blumenthal, Regan Early, Edwin D. Grosholz, Joshua J. Lawler, Luke P. Miller, Cascade J.B. Sorte, Carla M. D'Antonio, Jeffrey M. Diez, Jeffrey S. Dukes, Ines Ibanez, Julian D. Olden

Faculty Publications, Biological Sciences

Many non-native plants in the US have become problematic invaders of native and managed ecosystems, but a new generation of invasive species may be at our doorstep. Here, we review trends in the horticultural trade and invasion patterns of previously introduced species and show that novel species introductions from emerging horticultural trade partners are likely to rapidly increase invasion risk. At the same time, climate change and water restrictions are increasing demand for new types of species adapted to warm and dry environments. This confluence of forces could expose the US to a range of new invasive species, including many …

Prey Selection By The Northern Watersnake, Nerodia Sipedon, Kyle O' Connell

Department of Environmental Studies: Undergraduate Student Theses

Prey selection and composition of the northern waternake, Nerodia sipedon was investigated between 8/2010 and 3/2011 by palpation of stomach contents in the field and conducting laboratory trials. 41 snakes were captured, five yielded prey contents. Fish parts, freshwater mussels, and an insect exoskeleton were found. No amphibians were found despite availability at study sites. Snakes in the laboratory underwent 22 trials, feeding on 11 occasions. Snakes fed on an equal number of both fish species, revealing no selection. Further research is needed to determine the rate of digestion of N. sipedon.

Movement Ecology Of An Intercontinental Migratory Bird During Spring Stopover, Emily Beth Cohen

Dissertations

Movement ecology is a component of nearly all aspects of animal behavior and an animal’s decision to move is likely influenced by a complex combination of exogenous and endogenous factors. Therefore, an examination of the causes and consequences of organismal movement provides a conceptual framework for understanding complex behavioral strategies. My dissertation research is focused on the movement ecology of an intercontinental migratory songbird during spring migration. I adopted experimental approaches to study the factors influencing how a songbird migrant, red-eyed vireos (Vireo olivaceus), makes decisions in unfamiliar landscapes from the initiation of spring stopover.

I simulated the …

No Accession-Specific Effect Of Rhizosphere Soil Communities On The Growth And Competition Of Arabidopsis Thaliana Accessions, Anna G. Aguilera, Adán Colón-Carmona, Rick Kesseli, Jeffrey S. Dukes

Biology Faculty Publication Series

Soil communities associated with specific plant species affect individual plants' growth and competitive ability. Limited evidence suggests that unique soil communities can also differentially influence growth and competition at the ecotype level. Previous work with Arabidopsis thaliana has shown that accessions produce distinct and reproducible rhizosphere bacterial communities, with significant differences in both species composition and relative abundance. We tested the hypothesis that soil communities uniquely affect the growth and reproduction of the plant accessions with which they are associated. Specifically, we examined the growth of four accessions when exposed to their own soil communities and the communities generated by …

Molecular Systematics Of The Middle American Genus Hypopachus (Anura: Microhylidae), Eli Greenbaum, Eric N. Smith, Rafael O. De Sá

Biology Faculty Publications

We present the first phylogenetic study on the widespread Middle American microhylid frog genus Hypopachus. Partial sequences of mitochondrial (12S and 16S ribosomal RNA) and nuclear (rhodopsin) genes (1275 bp total) were analyzed from 43 samples of Hypopachus, three currently recognized species of Gastrophryne, and seven arthroleptid, brevicipitid and microhylid outgroup taxa. Maximum parsimony (PAUP), maximum likelihood (RAxML) and Bayesian inference (MrBayes) optimality criteria were used for phylogenetic analyses, and BEAST was used to estimate divergence dates of major clades. Population-level analyses were conducted with the programs NETWORK and Arlequin. Results confirm the placement of Hypopachus …

Gravesoil Microbial Community Structure During Carcass Decomposition, Amy E. Maile

Department of Entomology: Dissertations, Theses, and Student Research

Dead bodies placed on soil represent unique challenges for investigators. Although processes in soils can be used to estimate postmortem interval, we know very little about how carcasses and insects affect gravesoil microbial communities.

To address this, the current project was composed of two experiments. Experiment one was conducted to investigate the effect of surface type on carcass decomposition and evaluate soil ecology methods. Experiment two was conducted to investigate the presence of an insect population (Lucilia sericata Meigen) on gravesoil microbial communities. Both experiments were conducted in a laboratory setting using freshly killed mouse carcasses. Mouse carcasses were …

Electrosensory Ampullary Organs Are Derived From Lateral Line Placodes In Bony Fishes, Melissa S. Modrell, William E. Benis, R. Glenn Northcutt, Marcus C. Davis, Clare V.H. Baker

Faculty Articles

Electroreception is an ancient subdivision of the lateral line sensory system, found in all major vertebrate groups (though lost in frogs, amniotes and most ray-finned fishes). Electroreception is mediated by 'hair cells' in ampullary organs, distributed in fields flanking lines of mechanosensory hair cell-containing neuromasts that detect local water movement. Neuromasts, and afferent neurons for both neuromasts and ampullary organs, develop from lateral line placodes. Although ampullary organs in the axolotl (a representative of the lobe-finned clade of bony fishes) are lateral line placode-derived, non-placodal origins have been proposed for electroreceptors in other taxa. Here we show morphological and molecular …

Mojave Applied Ecology Notes Fall 2011, E. Cayenne Engel, Scott R. Abella, Kathryn A. Prengaman, Jason Whited, Peter Michel

Mojave Applied Ecology Notes

Paper on impacts of Mojave wildfires through time published, possibilities of catastrophic Mt. Charleston forest fires, vegetation mapping at three national parks, UNLV library’s special collections, and the benefits of scientific publications to managers and stakeholders

Limits To Sexual Reproduction In Geothermal Bryophytes, Sarah M. Eppley, Todd N. Rosenstiel, Camille Brianne Graves, Estefanía Llaneza García

Biology Faculty Publications and Presentations

Previous research suggests that while sexual reproduction generally increases with environmental stress it may decrease with extreme stress, at the edge of eukaryotic life. In this study, we explored the limits to sexual reproduction in an extremophile, bryophyte system to ultimately understand the processes that limit sexual reproduction. We used field data from geothermal sites at Lassen Volcanic National Park, California, to demonstrate that sexual reproduction, as measured by the number of sporophytes per shoot, decreases with increasing environmental stress. We found that the number of sporophytes per shoot is positively correlated with distance from geothermal features. When Pohlia nutans …

Rumbling In The Benthos: Acoustic Ecology Of The California Mantis Shrimp Hemisquilla Californiensis, E. Staaterman, C. Clark, A. Gallagher, M. Devries, T. Claverie, S. Patek

Faculty Publications, Biological Sciences

Although much research has focused on acoustic mapping and exploration of the benthic environment, little is known about the acoustic ecology of benthic organisms, particularly benthic crustaceans. Through the use of a coupled audio–video system, a hydrophone array, and an autonomous recording unit, we tested several hypotheses about the field acoustics of a benthic marine crustacean, Hemisquilla califor­niensis. Living in muddy burrows in southern California, these large mantis shrimp produce low frequency ‘rumbles’ through muscle vibrations. First, we tested whether acoustic signals are similar in the field and in the laboratory, and discovered that field-produced rumbles are more acoustically and …

Interspecies Comparison Of Αii-Spectrin Abundance Between Chinook Salmon And Steelhead, Brielle D. Kemis, Ann L. Miracle, Katie A. Wagner, Christa M. Woodley

STAR Program Research Presentations

Salmonids, such as Chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss), are a staple economic, recreational, tribal, and environmental resource, yet many populations are unsustainable. This study was part of a broad scale effort to monitor the impact of downstream migration obstacles on juvenile salmonid health and survival, which is an essential step towards increasing Smolt-to-Adult Return ratios (SARs). The objective of this study was to determine if juvenile Chinook salmon and steelhead exhibit differing quantities of alphaII-Spectrin Breakdown Products (SBDPs) over two consecutive spring migration periods, indicative of neurogenesis rate and/or biological response to head …

A Long-Term Control Project For An Invasive Plant: Assessment Of Phragmites Australis Reduction And Redevelopment Of Native Vegetation In Interdunal Swales Of Sandy Neck Barrier Beach, Cape Cod, Massachusetts, Dena Tomassi

Biology Masters Theses Collection

Phragmites australis is a perennial wetland grass that is native to North America. However, salt marshes, estuaries, and other wetlands throughout the northeast USA and Canada have witnessed a dramatic range expansion and population increase of the introduced genetic variant Phragmites australis haplotype M (Saltonstall 2002), with loss of native vegetation through competitive exclusion. Within the dune system of Sandy Neck Barrier Beach, freshwater wetland swales form in low elevation areas, which harbor a diverse wetland plant community dominated by shrubs, and sedges -- and including some rare and endangered species. To conserve and protect these wetland plant associations, annual …

Avian Influenza In Migratory Birds In The United States, 2007–2009, And Effects Of September Hunting Seasons On Survival, Harvest, And Recovery Rates Of Canada Geese Banded In Southeast Nebraska, Scott R. Groepper

School of Natural Resources: Dissertations, Theses, and Student Research

Highly-pathogenic avian influenza virus (HPAIV H5N1) poses risks to wild birds, poultry, and humans. Personnel with the United States Department of Agriculture-Animal Plant Health Inspection Service-Wildlife Services, state, and tribal wildlife agencies collected 168,940 samples from migratory birds from 2007 to 2009 to test for presence of HPAIV H5N1. No HPAIV was found, but other subtypes were discovered, including H5 and H7. I estimated prevalence of avian influenza virus by flyway and found prevalence was lowest each year in the Atlantic Flyway (6.7%–8.3%), highest in the Pacific Flyway in 2007 (13.3%) and 2008 (13.4%), and highest in the Mississippi Flyway …

Survival, Breeding Frequency, And Migratory Orientation In The Jefferson Salamander, Ambystoma Jeffersonianum, Stephen P. De Lisle, Kristine L. Grayson

Biology Faculty Publications

Accurate estimates of demographic parameters, such as survival and breeding frequency, are necessary for the conservation and management of animal populations. Additionally, life-history data are required for gaining an empirical understanding of the ecology of natural populations. We monitored a population of Jefferson Salamanders (Ambystoma jeffersonianum) breeding in a permanent mountain-top pond at the southern limit of this species’ geographic range in Virginia over four years. We used closed multistate mark-recapture models with Pollock's robust design to estimate the demographic parameters of this population. Additionally, we used point-of-capture data to compare the orientation of migrations into and out …

The Effects Of Arbuscular Mycorrhizal (Am) Fungal And Garlic Mustard Introductions On Native Am Fungal Diversity, Alexander M. Koch, Pedro M. Antunes, Kathryn Barto, Don Cipollini, Daniel L. Mummey, John N. Klironomos

Biological Sciences Faculty Publications

Introduced, non-native organisms are of global concern, because biological invasions can negatively affect local communities. Arbuscular mycorrhizal (AM) fungal communities have not been well studied in this context. AM fungi are abundant in most soils, forming symbiotic root-associations with many plant species. Commercial AM fungal inocula are increasingly spread worldwide, because of potentially beneficial effects on plant growth. In contrast, some invasive plant species, such as the non-mycorrhizal Alliaria petiolata, can negatively influence AM fungi. In a greenhouse study we examined changes in the structure of a local Canadian AM fungal community in response to inoculation by foreign AM fungi …

Controls On The Formation Of Algal Blooms In The Lower Chesapeake Bay And Its Tributaries, Ryan Eric Morse

OES Theses and Dissertations

Algal blooms occur seasonally in the Chesapeake Bay and its tributaries, and while the consequences of algal blooms have been qualitatively and quantitatively assessed, the causes of algal blooms and mechanisms of bloom initiation are still not well understood despite decades of research. In order to understand nutrient dynamics and other factors that promote the initiation of algal blooms, the Lafayette River, a tidal sub-estuary of Chesapeake Bay that experiences seasonal algal blooms, was sampled daily in the fall of 2005. Three phytoplankton blooms (Chlorophyll a concentrations exceeding twice the average of monthly measurements from 2000-2009) occurred during this period, …

Mojave Applied Ecology Notes Summer 2011, Scott R. Abella, Charles W. Denton, David G. Brewer, Rory W. Steinke, Wayne A. Robbie, W. Wallace Covington, E. Cayenne Engel, Ross Guida

Mojave Applied Ecology Notes

Thoughts on fire possibilities on Mount Charleston, estimating historical densities of Ponderosa pine in northern AZ, over-understory changes in the Spring Mountains, seeding effectiveness in Red Rock Canyon, workshop announcements.