Ecology and Evolutionary Biology Commons^™

Designation Of A Neotype For Leptodactylus Gracilis (Duméril And Bibron, 1840) (Amphibia: Leptodactylidae), Rafael O. De Sá, A. Dubois, A. Ohler

Biology Faculty Publications

The examination of the preserved specimens in the herpetological collection of the Museum National d'Histoire Naturelle, along with a review of the original literature, indicates that no extant specimen can be undoubtedly identified as the holotype of Leptodactylus gracilis (DumCri.l and Bibron, 1840). Furthermore, it revealed that the type locality recently assigned to this taxon is in error.

The Emergence Of Sex, Ursula Goodenough

Biology Faculty Publications & Presentations

Biological traits, the foci of natural selection, are by definition emergent from the genes, proteins, and other “nothing-buts” that constitute them. Moreover, and with the exception of recently emergent “spandrels,” each can be accorded a teleological dimension—each is “for” some purpose conducive to an organism's continuation. Sex, which is “for” the generation of recombinant genomes, may be one of the most ancient and ubiquitous traits in biology. In the course of its evolution, many additional traits, such as gender and nurture, have emerged. Patterns of sexual exchange are the basis for patterns of biological evolution and are central to the …

Occurrence And Biological Effect Of Exogenous Steroids In The Elkhorn River, Nebraska, Usa, Alan S. Kolok, Daniel D. Snow, Satomi Kohno, Marlo K. Sellin, Louis J. Guillette Jr.

Biology Faculty Publications

Recent studies of surface waters in North America, Japan, and Europe have reported the presence of steroidogenic agents as contaminants. The current study has three objectives: 1) to determine if steroidogenic compounds are present in the Elkhorn River, 2) to determine if sediments collected from the Elkhorn River can act as a source of steroidogenic compounds to aquatic organisms, and 3) to determine if site-specific biological effects are apparent in the hepatic gene expression of fathead minnows. Evidence was obtained using three approaches: 1) deployment of polar organic chemical integrative samplers (POCIS), 2) deployment of caged fathead minnows, and 3) …

Species Invasion Shifts The Importance Of Predator Dependence, Blaine D. Griffen, David G. Delaney

Faculty Publications

The strength of interference between foraging individuals can influence per capita consumption rates, with important consequences for predator and prey populations and system stability. Here we demonstrate how the replacement of a previously established invader, the predatory crab Carcinus maenas, by the recently invading predatory crab Hemigrapsus sanguineus shifts predation from a species that experiences strong predator interference (strong predator dependence) to one that experiences weak predator interference (weak predator dependence). We demonstrate using field experiments that differences in the strength of predator dependence persist for these species both when they forage on a single focal prey species only (the …

Non-Standard Sources In A Standardized World: Responsible Practice And Ethics Of Acquiring Turtle Specimens For Scientific Use, Edgar Lehr, Russell Burke, Linda Ford, Steve Mockford, Peter Pritchard, Jose Rosado, Darrell Senneke, Bryan Stuart

Edgar Lehr

No abstract provided.

Correlation Of Eastern Wild Turkey Poult:Hen Ratios With Population Indices To Detect Reproductive Density Dependence, Jay D. Mcghee, Jim Berkson

Virginia Journal of Science

Knowledge of how density affects population growth is important for the harvest management of wild turkey. Unfortunately, available time-series are often too short for statistical detection of density dependence. The correlation between wild turkey recruitment and population size was assessed using data from 7 state wildlife agencies, circumventing the problem of short time-series by using multiple datasets. Correlation coefficients were calculated between surveyed poult:hen ratios and harvest-based population indices for 31 geographic or harvest management regions. Estimated correlation coefficients were tested for homogeneity to determine if an average correlation could be calculated. Correlation coefficients for the 29 regions ranged from …

Life History And Courtship Behavior Of Black Perch, Embiotoca Jacksoni (Teleostomi: Embiotocidae), From Southern California, Bridgette Froeschke, Larry Allen, Daniel Pondella

Daniel Pondella

The black perch, Embiotoca jacksoni Agassiz, 1853, is a common reef fish associated with nearshore marine habitats of California, with the majority of the population occurring within the Southern California Bight. Black perch were collected throughout southern California from Santa Barbara to Carlsbad, including Santa Catalina Island, to determine their physical characteristics, growth, sex ratio, periodicity of reproduction, and length of gestation. Courtship observations were conducted using scuba along the King Harbor Breakwater in Redondo Beach, California, from January 2004 to December 2005 to verify periodicity of courting and associated reproductive behaviors. Specimens captured ranged from 75 to 220 mm …

Land Cover Types Of The Las Vegas Wash, Nevada, Seth A. Shanahan, Dave Silverman, Art Ehrenberg

Publications (WR)

Vegetation type, extent, continuity, and structure are some of the most important factors that determine wildlife diversity and distribution. Other contributing factors that shape wildlife communities include disturbance, competition, climate, and water availability. Because vegetation communities in the southwestern U.S. gradate sharply along zones of soil moisture, wildlife are often restricted to specific vegetation types. Along the Las Vegas Wash (Wash), Nevada, more than 250 wildlife species have been documented to occur in distinct wetland, riparian, and upland vegetation types. Recent studies have investigated the diversity and distribution of amphibians, birds, fishes, mammals, and reptiles (Shanahan 2005, 2005a, Van Dooremolen …

Description Of The Tadpole Of Leptodactylus Pustulatus Peters, 1870 (Anura: Leptodactylidae), Rafael O. De Sá, Reuber Brandão, Lorena Dall'ara Guimarães

Biology Faculty Publications

The external morphology and oral disc of the tadpole of Leptodactylus pustulatus Peters, 1870, are described and illustrated for Gosner stage 39. The internal oral anatomy was analyzed with SEM at Gosner stage 36 whereas chondrocranial anatomy is reported for Gosner stage 35. The overall characteristics do not depart from those known for the genus Leptodactylus and they particularly agree for those of the melanonotus species group. The labial tooth row formula is 2(2)/3. Observations are presented that suggest that L. pustulatus engages in larval parental care.

Resumo

São descritas a morfologia externa e o disco oral do girino de …

Lifetime Reproductive Success Of Female Eastern Kingbirds (Tyrannus Tyrannus): Influence Of Lifespan, Nest Predation And Body Size, Michael T. Murphy

Biology Faculty Publications and Presentations

I report on the lifetime reproductive success (LRS) of female Eastern Kingbirds (Tyrannus tyrannus) in central New York. I investigated the major correlates of LRS and specifi cally tested the hypothesis that small body size yields reproductive benefi ts. Lifetime reproductive success varied widely: 15–20% of females failed to fledge young over their life, whereas 50% of young were fledged by 20% of females. Female lifespan varied between one and eight years, and females that died after one breeding season tended to be smaller-bodied than long-lived females (≥2 seasons). I therefore conducted analyses of LRS for the entire sample and …

The Tadpole Of Eupsophus Queulensis (Anura, Cycloramphidae), Diana R. Cárdenas-Rojas, Alberto Veloso, Rafael O. De Sá

Biology Faculty Publications

The genus Eupsophus is characterized by endotrophic larvae that inhabit water-filled cavities. The larvae feed from large yolk reserves during metamorphosis. The external morphology has been described for four of the ten known species and data on larval chondrocranial morphology are available only for one. We describe the extema1 morphology, oral disc and chondrocranial anatomy of the larvae of Eupsophus queulensis. The characteristics of E. queulensis tadpoles are compared with those of other Eupsophus larvae.

Improving Natural History Research With Image Analysis: The Relationship Between Skin Color, Sex, Size And Stage In Adult Red-Spotted Newts, Andrew K. Davis, Kristine L. Grayson

Biology Faculty Publications

Natural history researchers are increasingly using digital cameras and computer software to measure their study animals. Adult Red-spotted Newts (Notophthalmus viridescens viridescens) are known to display a range of skin colors, from brown to green, but it has not been possible to quantify this variation until the advent of image analysis technology. We used an image analysis approach to compare skin color between sexes, across a range of sizes, and between aquatic and post-breeding (emigrating to the terrestrial habitat) stage adult newts. From 232 individuals (53% male, 47% female) we documented a wide but subtle range of skin …

Shark Bay Prawn And Scallop Fisheries. Draft Review Report, Department Of Fisheries Western Australia

Fisheries management papers

In recent times, the Department of Fisheries has received representations from both sectors about the ongoing interaction of the fisheries and their respective management settings. As a result, a decision was made to comprehensively review the fisheries, taking into account matters of fishery sustainability and gear interactions, together with industry economics and market considerations. The review has also addressed research requirements to ensure an appropriate scientific basis for decision-making into the future.

The Tadpole Of Leptodactylus Notoaktites Heyer, 1978 (Anura, Leptodactylidae), Rafael O. De Sá, José A. Langone, Magno V. Segalla

Biology Faculty Publications

The external morphology and oral disc of the tadpole of Leptodactylus notoaktites Heyer, 1978, are described and illustrated for Gosner’s stage 33. The internal oral anatomy was analyzed under SEM at Gosner’s stage 36 whereas chondrocranial anatomy is reported for Gosner’ stage 38. The morphology of this tadpole is compared with those available for other species of the L. mystaceus complex. The overall characteristics do not depart from those known for the genus Leptodactylus and they particularly agree for those of the fuscus species group. The labial tooth row formula is 2(2)/3.

Spiders Fluoresce Variably Across Many Taxa, Kindra Andrews, Scott M. Reed, Susan E. Masta

Biology Faculty Publications and Presentations

The evolution of fluorescence is largely unexplored, despite the newfound occurrence of this phenomenon in a variety of organisms. We document that spiders fluoresce under ultraviolet illumination, and find that the expression of this trait varies greatly among taxa in this species-rich group. All spiders we examined possess fluorophores in their haemolymph, but bright fluorescence appears to result when a spider sequesters fluorophores in its setae or cuticle. By sampling widely across spider taxa, we determine that fluorescent expression is labile and has evolved multiple times. Moreover, examination of the excitation and emission properties of extracted fluorophores reveals that spiders …

Kin Selection Does Not Explain Male Aggregation At Leks Of 4 Manakin Species, Bette Loiselle, Thomas Ryder, Renata Durães, Wendy Tori, John Blake, Patricia Parker

Biology Department Faculty Works

In lek-mating systems, males aggregate at display arenas and females visit solely for the purpose of mating. This breeding system is characterized by high variance in male mating success with one male often receiving most copulations. High reproductive skew among males has led to question why males join leks when their chances of reproductive success are so low. Kin selection has been invoked as a mechanism to explain the evolution of lekking behavior, whereby nonreproducing but genetically related males gain indirect inclusive-fitness benefits. Evidence for kin selection among lek-mating birds is, however, mixed. Here, we show that kin selection is …

Preliminary Notes On Tachinidae Reared From Lepidoptera In The Ecuadorian Andes, John O. Stireman Iii

Biological Sciences Faculty Publications

Current estimates of the species richness of Tachinidae among geographical provinces suggest that the Neotropical Region harbors the largest number of species and represents a geographic epicenter of tachinid diversification (O’Hara 2006). The Neotropics boasts an impressive fauna consisting of 2864 described species belonging to 822 genera at the time of the Neotropical catalog (Guimarães 1971), making it almost twice as species rich as any other geographic realm (O’Hara 2006; Stireman et al. 2006). This diversity is most apparent at middle elevations (1000– 2000m) along the mountain chains of tropical Central and South America, where tachinids are an abundant and …

Does Increasing Biology Teacher Knowledge Of Evolution And The Nature Of Science Lead To Greater Advocacy For The Teaching Of Evolution In Schools?, Ross Nehm, Irvin Sam Schonfeld

Publications and Research

This study investigated whether or not an increase in secondary science teacher knowledge about evolution and the nature of science gained from completing a graduate-level evolution course was associated with greater preference for the teaching of evolution in schools. Forty-four precertified secondary biology teachers participated in a 14-week intervention designed to address documented misconceptions identified by a precourse instrument. The course produced statistically significant gains in teacher knowledge of evolution and the nature of science and a significant decrease in misconceptions about evolution and natural selection. Nevertheless, teachers' postcourse preference positions remained unchanged; the majority of science teachers still preferred …

Glow Sticks As Effective Bait For Capturing Aquatic Amphibians In Funnel Traps, Kristine L. Grayson, Andrew W. Roe

Biology Faculty Publications

Funnel traps of various designs have been used to capture adults and larvae of aquatic amphibians (e.g., Buech and Egeland 2002; Richter 1995). Most studies use unbaited funnel traps to capture amphibians while others have used shrimp or salmon eggs (Adams et al. 1997). Light traps and light sticks are commonly used in studies of fish, particularly larvae (Doherty 1987; Marchetti et al. 2004), but have not been widely used to capture amphibians. Glow sticks have been mentioned briefly in the literature as a means to increase capture rates of aquatic amphibians (Smith and Rettig 1996), but no studies have …

An Ecologically-Significant Range Extension For Hahn's Short-Tailed Fruit Bat (Carolllia Subrufa) In Southwestern Costa Rica, Donald A. Mcfarlane, Keith Christenson

WM Keck Science Faculty Papers

A range extension for Hahn's short-tailed fruit bat, Carollia subrufa, is reported which extends the distribution of the species from the Pacific Dry Forest into the Pacific Moist Forest ecoregion. This raises the possibility that the species may be more widely distributed in Costa Rica than currently supposed, adding almost 30,000 km² of potential range.

Spatial And Temporal Expression Of Vegetation And Atmospheric Variability From Stable Carbon And Nitrogen Isotope Analysis Of Bat Guano In The Southern United States, Christopher M. Wurster, Donald A. Mcfarlane, Michael I. Bird

WM Keck Science Faculty Papers

Stable isotopes of faeces contain information related to the animals feeding ecology. The use of stable isotope values from subfossil faeces as a palaeoenvironmental indicator depends on how faithfully the animal records their local environment. Here we present insectivorous bat guano δ¹³C and δ¹⁵N values from a precipitation gradient across the southern United States and northern Mexico to compare with local vegetation and climate. We find δ¹³C values to be an excellent predictor of expected C₄/CAM vegetation, indicating that the bats are non-selective in their diet. Moreover, we find bat guano δ …

Behavioural Plasticity In An Ecological Generalist: Microhabitat Use By Western Fence Lizards, Dee A. Asbury, Stephen C. Adolph

All HMC Faculty Publications and Research

Question: What is the basis for geographic variation in microhabitat use in fence lizards?

Hypothesis: Population differences in microhabitat use reflect behavioural plasticity rather than genetic or experiential differences.

Organisms: Western fence lizards (Sceloporus occidentalis).

Field site: Three sites (desert, valley, and mountain) in southern California, USA.

Methods: We compared habitat use by free-ranging lizards in three field populations. We also collected lizards from these three populations and studied their microhabitat use in experimental enclosures at a single field site.

Results: In the wild, lizards chose higher and shadier perches at the hottest (desert) site, lower and sunnier perches at …

Review Of Analysis Of Phylogenetics And Evolution With R By Emmanuel Paradis, Daniel M. Stoebel

All HMC Faculty Publications and Research

This is a book review.

Review Of Jewish Tradition And The Challenge Of Darwinism, Geoffery Cantor And Marc Swetlitz, Eds., Daniel M. Stoebel

All HMC Faculty Publications and Research

This is a book review.

Microarray Challenges In Ecology, Jan E. Kammenga, Michael A. Herman, N. Joop Ouborg, Loretta Johnson, Rainer Bretling

School of Biological Sciences: Faculty Publications

Microarrays are used to measure simultaneously the amount of mRNAs transcribed from many genes. They were originally designed for gene expression profiling in relatively simple biological systems, such as cell lines and model systems under constant laboratory conditions. This poses a challenge to ecologists who increasingly want to use microarrays to unravel the genetic mechanisms underlying complex interactions among organisms and between organisms and their environment. Here, we discuss typical experimental and statistical problems that arise when analyzing genome-wide expression profiles in an ecological context. We show that experimental design and environmental confounders greatly influence the identification of candidate genes …

Structural Stability And Endonuclease Activity Of Pi-Scei Gfp-Fusion Protein, Ali Senejani, Peter J. Gogarten

Biology and Environmental Science Faculty Publications

Homing endonucleases are site-specific and rare cutting endonucleases often encoded by intron or intein containing genes. They lead to the rapid spread of the genetic element that hosts them by a process termed ‘homing’; and ultimately the allele containing the element will be fixed in the population. PI-SceI, an endonuclease encoded as a protein insert or intein within the yeast V-ATPase catalytic subunit encoding gene (vma1), is among the best characterized homing endonucleases. The structures of the Sce VMA1 intein and of the intein bound to its target site are known. Extensive biochemical studies performed on the PI-SceI enzyme provide …

Pathways Of Anaerobic Carbon Cycling Across An Ombrotrophic–Minerotrophic Peatland Gradient, Jason K. Keller, Scott D. Bridgham

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Peatland soils represent globally significant stores of carbon, and understanding carbon cycling pathways in these ecosystems has important implications for global climate change. We measured aceticlastic and autotrophic methanogenesis, sulfate reduction, denitrification, and iron reduction in a bog, an intermediate fen, and a rich fen in the Upper Peninsula of Michigan for one growing season. In 3-d anaerobic incubations of slurried peat, denitrification and iron reduction were minor components of anaerobic carbon mineralization. Experiments using 14C-labeled methanogenic substrates showed that methanogenesis in these peatlands was primarily through the aceticlastic pathway, except early in the growing season in more ombrotrophic peatlands, …

Response Of Eelgrass Zostera Marina To Co2 Enrichment: Possible Impacts Of Climate Change And Potential For Remediation Of Coastal Habitats, Sherry L. Palacios, Richard C. Zimmerman

OES Faculty Publications

Projected increases in dissolved aqueous concentrations of carbon dioxide [CO_2(aq)] may have significant impacts on photosynthesis Of CO₂-limited organisms such as seagrasses. Short-term CO_2(aq) enrichment increases photosynthetic rates and reduces light requirements for growth and survival of individual eelgrass Zostera marina L. shoots growing in the laboratory under artificial light regimes for at least 45 d. This study examined the effects of long-term CO_2(aq) enrichment on the performance of eelgrass growing under natural light-replete (33% surface irradiance) and light-limited (5% surface irradiance) conditions for a period of 1 yr. Eelgrass shoots were grown at …

Parasites, Proteomics And Performance: Effects Of Gregarine Gut Parasites On Dragonfly Flight Muscle Composition And Function, Rudolf J. Schilder, James H. Marden

School of Biological Sciences: Faculty Publications

In previous work, we found that dragonflies infected with gregarine gut parasites have reduced muscle power output, loss of lipid oxidation in their flight muscles, and a suite of symptoms similar to mammalian metabolic syndrome. Here, we test the hypothesis that changes in muscle protein composition underlie the observed changes in contractile performance. We found that gregarine infection was associated with a 10-fold average reduction in abundance of a ~155·kDa fragment of muscle myosin heavy chain (MHC; ~206·kDa intact size). Insect MHC gene sequences contain evolutionarily conserved amino acid motifs predicted for calpain cleavage, and we found that calpain digestion …

Evolution, Jonathan Eisen

Jonathan A. Eisen Ph.D.

No abstract provided.