Cell and Developmental Biology Commons^™

Is Trimethylamine N-Oxide A Friend, Foe, Or Hormetic Agent In Patients With Parkinson’S Disease: A Focused Review Of One Microbial Metabolite, Abraham B. Alton

Student Works

This review synthesizes recent literature examining trimethylamine N-oxide (TMAO) synthesis and its potential role in Parkinson’s Disease (PD) pathology. An increase in TMAO plasma and CSF concentration is associated with PD progression and severity. TMAO biosynthesis is a two-step process. First, precursors including carnitine and choline are converted to trimethylamine (TMA) by gut microbes. Second, TMAO is oxidized to TMAO in the liver. Once absorbed into circulation TMAO crosses the blood brain barrier and may influence PD disease pathology by increasing neuroinflammation and astrocyte activation and damaging the cerebral lymphatic system. These mechanisms may contribute to the cognitive and motor …

Alphasperm Data, Seth J. Parks, Timothy G. Jenkins

ScholarsArchive Data

Data from a prospective cohort study of sperm DNA methylation, semen analysis, and DNA fragmentation in fertile and infertile men before and after treatment with a male fertility antioxidant supplement.

Tight Junction Protein Impact On Sonic Hedgehog Pathway, Josh Freeman, Hudson Christensen, Dario Mizrachi

Library/Life Sciences Undergraduate Poster Competition 2025

The Sonic Hedgehog Pathway is critical for cell division and proliferation, and when disrupted, can be a major contributor to the overproliferation of cells and complications in the organism from the resultant cancers. Experimentation upon the organism Planaria Torva and A549 cells using chimera Occludin (COC)–a traditionally isolated tight junction protein having no role in the SHH pathway–has shown dramatic changes within the organism/cell signaling system, suggesting that tight-junction proteins may play a role in–or can be used to manipulate–this specific cell signaling pathway by inhibiting or activating key proteins. The possibility of a “mechanotransduction” effect by COC on SHH …

End Epilepsy: Human And Rodent Seizures Demonstrate A Dynamic Interplay With Spreading Depolarizations, Daniel Hummel, Jacob H. Norby, Noah Ricks, John D. Rolston, Shervin Rahimpour, Juha Voipio, Andrew J. Trevelyan, Elliot H. Smith, Ryley Parrish

Library/Life Sciences Undergraduate Poster Competition 2025

Affecting more than 50 million people worldwide, Epilepsy is a condition of repeated seizures. Seizures (Sz) occur when brain cells transmit uncontrolled electrical signals, and most often terminate on their own, but how this happens is unknown. A proposed mechanism of Sz termination is a spreading depolarization (SD). A SD is a wave that travels through the brain, suppressing brain activity. Currently, the relationship between SDs and seizures is not well understood. The goal of this study was to understand how the two phenomena interact in both rodent brains, and humans. Better understanding of SDs may lead to the development …

Effects Of Ethanol On G-Csf Sensitivity In The Ventral Striatum, Kaleb Gardner, Rachel Campbell, Camryn Holt, Zachary Valentine, Chase Seiter, Jordan T. Yorgason

Library/Life Sciences Undergraduate Poster Competition 2025

Granulocyte-colony stimulating factor (G-CSF) is a known neuromodulator for dopamine (DA) release in the ventral striatum • Increased peripheral G-CSF levels enhances abused substance effects • The G-CSF mechanism for enhancing release remains unknown • How ethanol affects G-CSF neuromodulation also remains unknown • The present studies examined G-CSF effects on striatal and mesolimbic circuitry and chronic ethanol effects on this system

Developement Of A Rodent Virtual Reality System For Measuring Reward, Aman Malhotra, Joe Davis, Jacob Cecil, Lauren Ford, Daniel-Luke Isemonger, Noah Moffat, Ryan Powers, Cody Siciliano, Ryan West, Jordan T. Yorgason

Library/Life Sciences Undergraduate Poster Competition 2025

Rodent VR is a tool for drug impact studies involving VR and optical imaging on motivation-related circuits using customizable maze creation and a comprehensive analysis program. We are using this combined with a GRINS lens surgical implant to gather real time data.

Comparative Whole Genome Sequencing Of Cryopreserved And Ffpe Cancer Tissue, Delaney Anderson, Ken Dixon, Ryan Miller, Sangmoon Lee, Jeffrey Okojie, Jared Barrott

Library/Life Sciences Undergraduate Poster Competition 2025

Whole genome sequencing (WGS) determines the DNA sequence of an organism’s entire genome & plays a key role in cancer precision medicine

• Currently, the main preservation method of cancer tissue for WGS is formalin-fixed, paraffin-embedded (FFPE) tissue; cryopreserved (CP) tissue is not routinely used in clinical settings
• Previous studies have determined CP tissue yields higher quality & quantity of DNA
• This study aimed to compare the outcomes of WGS in CP & FFPE samples.

Chilling Insights: A Comparative Study Of Cancer Tissue Preservation, Rebecca Bascom, Paige Nelson, Jacob Harris, Jack Davis, Mackenzie Burr, Jeffrey Okojie, David Booker, Ken Dixon, Jared Barrott

Library/Life Sciences Undergraduate Poster Competition 2025

It is a fact that personalized cancer treatment leads to better patient outcomes. But what if the current treatments aren't as personalized as they could be?

Clinical cancer tissue samples are typically sent to labs as formalin-fixed and paraffin-embedded (FFPE) tissues. A recent study4 indicates that cryo-preserved (CP) tissues offer significantly better DNA quality and quantity than FFPE samples, suggesting a need to reevaluate preservation methods. We aim to expand this research by comparing protein expression in FFPE and CP samples.

Specifically, we will focus on PD-L1, a protein that inhibits T-cells and is overexpressed in all cancer cells. The …

Arid1a Knockout: A Catalyst For Osteosarcoma Progression, Alma Taggart, Peyton Worley, Heinen Louis, Emilee Nielson, Jared Barrott

Library/Life Sciences Undergraduate Poster Competition 2025

Osteosarcoma (OS) is a rare form of bone cancer, with high mortality rates in children and young adults. Current OS research has been limited by a lack of mouse models that accurately represent the metastatic and chemoresistant nature of this cancer. Furthermore, by focusing on patient-derived xenograft models it limits the applications of novel immunotherapies because these mouse models lack a competent immune system. By knocking out Arid1a, we generated a mouse model that more accurately reflects the aggressive nature of the tumor with 100% penetrance of tumorigenesis and 41% penetrance of metastasis, while maintaining a competent immune system. This …

Where The Green-To-Red Neurexin Grows: Analyzing Neurexin-3a Expressing Neurons Through Dendra2 Knock-Ins And Full Locus Deletion, Dillon J. Brown, Isaac E. Greenwood, Annalie Martin, Arminda Suli Ph.D.

Library/Life Sciences Undergraduate Poster Competition 2025

The optic tectum (OT) is a zebrafish midbrain structure homologous to the mammalian superior colliculus (SC). The OT facilitates integration of multisensory input and coordinates a corresponding involuntary response. Single-cell RNA sequencing data from our lab indicates the differential expression of the presynaptic cell adhesion protein - neurexin3a - within two cell populations (OT5 and OT8) of the zebrafish OT. The SC and neurexin3a have both been implicated in autism spectrum disorder (ASD), warranting, therefore, a further investigation. To visualize neurexin3a positive neurons in the OT, we are generating a transgenic zebrafish line that expresses the green-to-red photoconvertible protein Dendra2 …

Rehydration Of Cadaveric Tissue: A Comparative Analysis, Zach Leonard, Emma Anderson, Jason Adams Phd

Library/Life Sciences Undergraduate Poster Competition 2025

Rehydration solutions contain a variety of different chemicals which help keep cadaveric tissue moist and well preserved. Previously, we have identified that ethylene glycol, glycerol, and propylene glycol are all effective humectants that allow cadaveric specimens to retain moisture. Additionally, a mixture of sodium carbonate, ethanol, and formalin, had favorable results in limited study. With this knowledge, we tested and compared the effectiveness of these solutions at rehydrating dried human tissues. In doing this, we have created a tissue library, providing an evidence-based standard for rehydrating solutions to allow for the rehydration of dried specimens in anatomy labs.

Fishing For Neurocircuitry: Identifying Multi-Sensory Integrating Neurons In The Optic Tectum Of Zebrafish, Logan Carson, Arminda Suli, Adeline Hamilton, Logan Carson, Karianne Jex, Erika C. Marks, Jordan T. Yorgason, Tracianne B. Neilsen

Library/Life Sciences Undergraduate Poster Competition 2025

The superior colliculus (SC) is a mammalian midbrain structure involved in multimodal sensory integration and is implicated to have a role in neurodevelopmental disorders. Although the presence of multisensory integrating neurons (MINs) in the SC has been well documented by electrophysiology techniques, little is known about their morphological or molecular characterization. To identify and study MINs, we utilized SC’s non-mammalian homologous structure–the optic tectum (OT)–in the genetically tractable model organism zebrafish. In this process, we generated transgenic lines that allowed for fluorescent detection of neuronal activity by expressing the genetically engineered calcium indicators: cytoRGECO and H2B-jRGECO1a, respectively in mechanosensory hair …

The Effect Of Epicatechin And Its Microbial Metabolites On Differing Pathways Of Beta-Cell Death In Type I And Type Ii Diabetes, Aubree Bench, Jeffery S. Tessem

Library/Life Sciences Undergraduate Poster Competition 2024

The pathogenesis of type 1 (T1D) and type 2 diabetes (T2D) is associated with progressive beta-cell death and loss of insulin secretion, making functional betacell mass preservation a priority in the treatment of diabetes. T1D beta-cell death is primarily mediated by autoimmune exposure of beta-cells to proinflammatory cytokines such as IL-1b, TNFa, and IFNg (1, 2). Beta-cell loss in T2D, however, is characterized by damage caused by a destructive metabolic state of persistent hyperglycemia and elevated free fatty acid (FFA) levels (2, 3). Our lab has shown that the monomeric flavonoid epicatechin and its metabolites hippuric acid, homovanillic acid, and …

Jaspine B And The Sea Sponge That Fights Cancer, Jack Davis, Jared Barrott, Adriene Pavek, Farjana Afrin, Sameena Mateen, Brendon Meldrum, Rocio Rojas, Pamela Diaz, Megan Condie, Ali Aghazadeh-Habashi, Srinath Pashikanti

Library/Life Sciences Undergraduate Poster Competition 2024

Jaspine B is a natural marine product, derived from the sea sponge, Jaspis, found in some tropical climates. Jaspine B has been shown to be an effective treatment in some cancers with an upregulation of sphingomyelin synthase. This research aimed to understand the effects of Jaspine B on synovial sarcoma, and investigate its potential to be used as targeted treatment in other cancers that have an upregulation of sphingomyelin synthase

Myofiber Necrosis To Electrical Stimulation-Induced Damage: Influence Of Menstrual Cycle Phase, Collin Deshler, Brandon Pfeifer, Mohadeseh Ahmadi, Werner N. Hunter, Madeline N. Nielsen, Krista S. Shimizu, Robert D. Hyldahl

Library/Life Sciences Undergraduate Poster Competition 2024

• Estrogen plays important roles in women's overall health, including cardiovascular health, metabolism, bone, connective tissue, and skeletal muscle.
• Existing evidence, mostly based on studies with ovariectomized rodents or post-menopausal women suggests that estrogen is essential for normal muscle recovery, growth, and function.
• Evidence indicates that estrogen plays a role in facilitating skeletal muscle regeneration by activating satellite cells.
• There is a lack of research on the impact of estrogen levels on skeletal muscle damage and recovery in premenopausal populations who have fluctuating levels of estrogen throughout their menstrual cycle.
• The purpose of this study was to determine how menstrual cycle …

Valproic Acid Alters Larval Behavior And Neuronal Composition Within The Optic Tectum Of Zebrafish, Bailey J. Calder, Jacquelyne C. Howell, Michael J. Zeyer, Annalie Martin, Sierra C. Dixon, Shane M. Lilya, Jason M. Hansen, Arminda Suli

Library/Life Sciences Undergraduate Poster Competition 2024

The mammalian superior colliculus (SC) and its non-mammalian homolog–the optic tectum (OT)–are midbrain structures that integrate multimodal sensory inputs and guide involuntary movements in response to relevant environmental cues. Recent work has drawn strong connections between the functions of the SC/OT and behavioral deficits observed in autism spectrum disorder (ASD), thus implicating this structure as a possible site affected in ASD. Since fetal exposure to valproic acid (VPA) has been associated with increased prevalence of ASD in humans, and ASD-like phenotypes in animal models, we exposed embryonic zebrafish to VPA to investigate the connection between ASD and OT development. In …

The Effect Of Percussive Massage On Collagen Gene Expression In Skeletal Muscle, James Bartling, Robert D. Hyldahl, Emma Schaugaard, Mohadeseh Ahmadi

Library/Life Sciences Undergraduate Poster Competition 2024

INTRODUCTION

• Exercise is a critical aspect of healthy living due in part to its effects of muscle adaptation, which are largely regulated by alterations in gene expression

• Sedentary behavior can be required by diverse life circumstances, suggesting a need to reproduce the beneficial effects of exercise by an alternative means

• Like exercise, percussive massage introduces a mechanical strain on the muscle, which could potentially replicate a similar remodeling response of the extracellular matrix (ECM). However, this has not yet been studied

• Collagen 1,3,&4 are major components of the ECM that adapt in response to exercise, and …

Exploring The Role Of Dopamine And Atp In Microglial Motility, Derek Langford, Jordan Yorgas, Christopher Galbraith, Channing Syme, Brayden Parker, Savannah Evans, Derek Langford, Eliza White, Erin Taylor, Lauren Ford, Hillary Wadsworth

Library/Life Sciences Undergraduate Poster Competition 2024

►Recent studies from our laboratory have identified that dopamine and ATP in the Nucleus Accubmens (NAc) are co-released.

►ATP is a chemoattractant for macrophages in general, and microglia specifically, suggesting that dopamine and ATP corelease may function to alter microglia activity.

►The present work characterizes the effects of microglia activation via lipopolysaccharide (LPS) on dopamine terminal function, and the effects of dopamine and ATP on microglia motility.

Staying Hydrated: A Comparative Analysis Of Humectants In Human Tissue, Rachel Prince, Jason Adams, Joseph Monsen

Library/Life Sciences Undergraduate Poster Competition 2024

3rd Place Poster Design

Humectants are an important class of compounds that attract and retain water within a cell. When mixed with water to create wetting solutions, humectants can prevent desiccation of cadaveric specimens1. Recognizing a relative scarcity of comparative studies analyzing the effects of various wetting solutions on post-preservation cadaveric maintenance, we utilized wet-dry analysis in order to compare the effects of four common humectants on water retention in human cadaveric tissue including brain, cardiac muscle, liver, lung, skeletal muscle, and skin. We created a concentration gradient for each humectant to identify the optimal concentrations of each compound for …

Determining If Optic Tecti Of Larval Zebrafish Receive Input From Deep Brain Photoreceptors, Emalie A. Christensen, Allison G. Pickens, Colby Odom, Griffin Sauer, Sarah Y. Jarrett, Maurice Hunt, Annalie Martin, Arminda Suli

Library/Life Sciences Undergraduate Poster Competition 2024

Deep brain photoreceptors (DBPs) are light-responsive sensory cells present in mammals and non-mammalian vertebrates. In non-mammalian vertebrates, studies have shown DBP involvement in various time and light dependent behaviors including circadian rhythm, phototaxis, and seasonal reproduction. In adult telosts, DBPs are present throughout the brain, including the optic tectum (OT), a midbrain structure that receives and integrates input from multiple sensory modalities. In this study, we aimed to determine if DBPs are part of or send input to the OT of larval zebrafish. Single-cell RNA sequencing of the larval zebrafish OT showed the presence of several opsins. We focused on …

Integrating Clinical Cancer And Ptm Proteomics Data Identifies A Mechanism Of Ack1 Kinase Activation, Eranga R. Balasooriya, Deshan Madhusanka, Tania P. López-Palacios, Riley J. Eastmond, Dasun Jayatunge, Jake J. Owen, Jack S. Gashler, Christina M. Egbert, Chanaka Bulathsinghalage, Lu Liu, Stephen R. Piccolo, Joshua L. Andersen

Faculty Publications

Beyond the most common oncogenes activated by mutation (mut-drivers), there likely exists a variety of low-frequency mut-drivers, each of which is a possible frontier for targeted therapy. To identify new and understudied mut-drivers, we developed a machine learning (ML) model that integrates curated clinical cancer data and posttranslational modification (PTM) proteomics databases. We applied the approach to 62,746 patient cancers spanning 84 cancer types and predicted 3,964 oncogenic mutations across 1,148 genes, many of which disrupt PTMs of known and unknown function. The list of putative mut-drivers includes established drivers and others with poorly understood roles in cancer. This ML …

A Descriptive Analysis Of Severe Maternal Morbidities In Southern Arizona, Joseph Sherman

Undergraduate Honors Theses

Introduction

Maternal morbidities and maternal deaths are rising at an alarming rate throughout the United States, despite advances in medicine and technology (Centers for Disease Control and Prevention [CDC], 2020). In 2020, maternal deaths climbed to its highest peak in thirty years, at 23.8 deaths per 100,000 births (CDC 2020; CDC 2022b). Maternal morbidities have also increased by nearly 200% from 1993 to 2014 (CDC, 2021). The startling rise in both maternal morbidities and maternal deaths is likely exacerbated by limited access to healthcare and the pervasiveness of chronic diseases such as obesity, diabetes, and heart disease (Carroll, 2017; Geller …

Interruption Of Junctional Adhesion Molecules Shows Developmental Defects, Wesley Allen, Nathan Beckett, Lauren Hall, Emma Holdaway, Sion Jung, Meredith Mann, Spencer Thacker, Jacob Wengler, Cailey Winn, Dario Mizrachi, Michael Stark

Library/Life Sciences Undergraduate Poster Competition 2022

Development of the central nervous system, the brain and the spinal cord, starts initially with the formation of the neural tube. This vital process starts as a sheet of cells which then folds into a cylindrical structure in the early stages of embryo development (Fig1). Defects in the formation of the neural tube can lead to permanent disabilities in babies after birth. This is important to understand as current statistics show that approximately 300,000 babies are born annually with neural tube defects. (NTDs). In addition to NTDs there are many other dangerous birth defects that are important to understand as …

Staying Hydrated: A Comparative Analysis Of Humectants In Human Skin, Ayden Olsen, Rachel Prince, Craig Reeves, Cassie Peterson, Jason Adams

Library/Life Sciences Undergraduate Poster Competition 2022

Humectants are an important class of compounds that attract and retain water within a cell. When mixed with water to create wetting solutions, humectants can prevent desiccation of cadaveric specimens. Recognizing a relative scarcity of comparative studies analyzing the effects of various wetting solutions on post preservation cadaveric maintenance, we utilized wet-dry analysis in order to compare the effects of four common humectants on water retention in human skin tissue. We created a concentration gradient for each humectant to identify the optimal concentrations of each compound for water retention, after which we compared water retention in tissue at the optimal …

A Ketogenic Diet Enhances Hippocampal Mitochondrial Efficiency, Cali E. Warren, Erin R. Saito, Benjamin T. Bikman

Library/Life Sciences Undergraduate Poster Competition 2022

Mitochondrial dysfunction and cognitive impairment are common symptoms in many neurologic disorders, as well as in nonpathological aging. Ketones have been suggested as therapeutic for their relevance in epilepsy and other neurodegenerative diseases and psychiatric disorders such as Alzheimer’s and Parkinson’s disease, schizophrenia, and major depressive disorder.

New Treatment For Multiple Sclerosis Could Halt Disease Progression Without Weakening Immune System, Carter Helquist, Dario Mizrachi

Library/Life Sciences Undergraduate Poster Competition 2022

• Multiple Sclerosis (MS) is a debilitating neurological and autoimmune disease in which immune cells cause demyelination of axons in nervous tissue.
• Current treatments for the disease are principally aimed at weakening the immune system to therefore weaken the autoimmune attack on the brain. This leaves patients prone to other sicknesses.
• We seek a treatment that prevents the immune cells from entering the central nervous system (CNS) thereby protecting its cells.
• We can prevent immune cells from entering the CNS by strengthening the blood brain barrier through targeting claudin 5 proteins in the tight junctions.
• This new treatment could mean increased …

Chimeric Claudins Reveal Role In Neural Tube Defects, Wesley Allen, Nathan Beckett, Emma Brenchley, Jacob Wengler, Lauren Hall, Cailey Winn, Meredith Mann, Sion Jung, Spencer Thacker, Rachel May, Dario Mizrachi, Micheal Stark

Library/Life Sciences Undergraduate Poster Competition 2022

Claudins (CLDN), a family of proteins found in the tight junction, play a major role in membrane permeability. While claudin disruption is known to contribute to the formation of neural tube defects (NTD), current research methods rely heavily on a non-specific toxin, CPE, when exploring the importance of CLDNs within neural tube formation. This makes it difficult to identify individual CLDN’s contribution to NTD formation, creating a need for a more specific method.

Identifying And Knocking Out Non-Visual Opsins In The Optic Tectum Of Zebrafish Larvae, Sarah Jarrett

Undergraduate Honors Theses

Deep brain photoreceptors (DBPs) are non-visual photoreceptors found in the brains of non-mammalian vertebrates like zebrafish. While using optogenetic techniques in our lab to photo-activate the ear (by expressing the light-gated channel: channelrhodopsin) in efforts of identifying optic tectum (OT) neurons that respond to and integrate auditory and visual stimuli, we found that violet light was able to elicit OT neuronal activity. OT activity was also detected in cases when visual and auditory stimulation was not possible due to removal of the eyes and absence of the exogenously expressed channelrhodopsin, respectively. Analyzing OT single-cell sequencing data of 7day post fertilization …

Toward A Methodology For Evaluating Dna Variants In Nuclear Families, Dustin B. Miller, Reid Robison, Stephen Piccolo

Faculty Publications

The genetic underpinnings of most pediatric-cancer cases are unknown. Population-based studies use large sample sizes but have accounted for only a small proportion of the estimated heritability of pediatric cancers. Pedigree-based studies are infeasible for most human populations. One alternative is to collect genetic data from a single nuclear family and use inheritance patterns within the family to filter candidate variants. This approach can be applied to common and rare variants, including those that are private to a given family or to an affected individual. We evaluated this approach using genetic data from three nuclear families with 5, 4, and …

Predicting Drug Sensitivity Of Cancer Cells Based On Dna Methylation Levels, Sofia P. Miranda, Fernanda A. Baião, Julia L. Fleck, Stephen R. Piccolo

Faculty Publications

Cancer cell lines, which are cell cultures derived from tumor samples, represent one of the least expensive and most studied preclinical models for drug development. Accurately predicting drug responses for a given cell line based on molecular features may help to optimize drug-development pipelines and explain mechanisms behind treatment responses. In this study, we focus on DNA methylation profiles as one type of molecular feature that is known to drive tumorigenesis and modulate treatment responses. Using genome-wide, DNA methylation profiles from 987 cell lines in the Genomics of Drug Sensitivity in Cancer database, we used machine-learning algorithms to evaluate the …