Biology Commons^™

Analysis Of Gene Expression In Filamentous Cells Of Candida Albicans Grown On Agar Plates, Paul E. Creger, Jill R. Blankenship

Biology Faculty Publications

Candida albicans (C. albicans) is a commensal organism of the human gastrointestinal and genitourinary tracts. C. albicans is also a major human pathogen, causing disease ranging from cutaneous infections to lethal systemic disease. The ability of this fungus to switch between yeast and filamentous forms of growth has long been linked to its pathogenesis. Filamentation can be induced by a variety of distinct environmental cues and can occur in either liquid or solid media. While some evidence suggests that there are differences between filamentation in solid and liquid media, gene expression analysis of filamentation in C. albicans has focused strictly …

Male Competition And Speciation: Expanding Our Framework For Speciation By Sexual Selection, Alycia C R Lackey, Michael D. Martin, R. M. Tinghitella

Biological Sciences: Faculty Scholarship

Sexual selection is a powerful source of rapid evolutionary change, and there is a long-standing hypothesis that it can cause reproductive isolation. However, our understanding of speciation by sexual selection is largely limited to mechanisms by which sexual selection via female mate choice can drive divergence (i.e., when male mating signals and female preferences for those signals diversify; Panhuis et al. 2001; Maan and Seehausen 2011). Male competition for mates—Darwin’s second mechanism of sexual selection—can also favor rapid and dramatic phenotypic and genotypic changes, yet it has been all but overlooked in speciation research (Darwin 1859, …

Termite Trail-Following Behavior Elicited By Ballpoint Pen Ink, Ariel M. Kershner

Faculty Curated Undergraduate Works

Termite trail-following behavior occurs because of pheromones produced in the sternal gland of the termites and secreted when the sternal gland touches a substance. 2-phenoxyethanol, a chemical found in ballpoint pen ink, is structurally similar to the trail-following pheromones and causes the termites to respond with trail-following behavior. This study investigated the difference in trail-following behavior between ballpoint pen ink, which contains 2-phenoxyethanol, and Sharpie ink, which does not contain 2-phenoxyethanol. The termites were placed on a square drawn with either ballpoint pen ink or Sharpie pen ink. Time spent on each of the squares was measured. We predicted that …

A Comparative Analysis Of Preservation Techniques For The Optimal Molecular Detection Of Hookworm Dna In A Human Fecal Specimen, Marina Papaiakovou, Nils Pilotte, Benjamin Baumer, Jessica Grant, Kristjana Asbjornsdottir, Fabien Schaer, Yan Hu, Raffi Aroian, Judd Walson, Steven A. Williams

Biological Sciences: Faculty Publications

Maximizing the recovery of PCR-amplifiable DNA is an important consideration in the optimization of field-ready PCR-based diagnostic techniques. Fecal specimen preservation is particularly important due to the universal use of stool for the non-invasive diagnosis of soil-transmitted helminth (STH) infections. A comprehensive and systematic assessment of methods for maintaining and preserving soil-transmitted helminth (STH) DNA, particularly from fragile eggs subjected to nuclease exposure in stool, has not been conducted previously. Through the comparative analysis of a variety of preservation techniques, the present study demonstrates that fecal samples designated for PCR-based molecular analysis maintain sample integrity for at least 60 days …

A Comparison Of Resveratrol And Other Polyphenolic Compounds On Notch Activation And Endothelial Cell Activity, Bryce Lafoya, Jordan A. Munroe, Allan R. Albig

Biology Faculty Publications and Presentations

Resveratrol is a polyphenolic compound produced by plants which makes its way into the human diet through plant-based foods. It has been shown to provide many health benefits, helping to ward of age-related diseases and promoting cardiovascular health. Additionally, resveratrol is a potent activator of the Notch signaling pathway. While resveratrol receives the most attention as a polyphenolic nutraceutical, other compounds with similar structures may be more potent regulators of specific cellular processes. Here, we compare resveratrol, apigenin, chrysin, genistein, luteolin, myricetin, piceatannol, pterostilbene, and quercetin for their ability to regulate Notch signaling. In addition, we compare the ability of …

Morphological Correlates And Behavioral Functions Of Sound Production In Loricariid Catfish, With A Focus On Pterygoplichthys Pardalis (Castelnau, 1855), Monique Renee Slusher

Dissertations and Theses

The Neotropical catfish Pterygoplichthys pardalis produces a harsh stridulation sound upon manual capture. This stridulation sound is made on the abduction of the pectoral fin spine, and is accomplished by friction of a ridged dorsal condyle against a rough spinal fossa of the cleithrum in the pectoral girdle. The sound produced has an average frequency of 121 Hz, and is used with other anti-predator adaptations such as bony subdermal armor and defensive fin-spreading. Pterygoplichthys pardalis does not display behavioral modification in response to conspecific stridulation sound, and therefore it is likely that stridulation sound in P. pardalis is being used …

Distribution Of A. Modesta, A. Julibrissin And M. Himalayana Gamble In Pir Lasura National Park, Sher Wali Khan, Nafeesa Qudsia Hanif, Madeeha Manzoor

Journal of Bioresource Management

Pir Lasura National Park (PLNP) in Azad Jammu and Kashmir, Pakistan is located in the Kotli Forest division and spans across an area of 13,900 acres. The list obtained through this study included 46 tree species of angiosperms, out of which only 3 species belong to the family Mimosaceae; A. modesta, A. julibrissin and M. himalayana gamble. A. modesta had 1.6 % constancy and belonged to class Ⅰ, A. julibrissin had 3.3% relative cover and belonged to class Ⅰ, whereas the relative vegetative cover of Mimosa himalayana gamble was too less to be tabulated. All the three species of the …

Differentially-Dimensioned Furrow Formation By Zygotic Gene Expression And The Mbt, Yi Xie, J Todd Blankenship

Biological Sciences: Faculty Scholarship

Despite extensive work on the mechanisms that generate plasma membrane furrows, understanding how cells are able to dynamically regulate furrow dimensions is an unresolved question. Here, we present an in-depth characterization of furrow behaviors and their regulation in vivo during early Drosophila morphogenesis. We show that the deepening in furrow dimensions with successive nuclear cycles is largely due to the introduction of a new, rapid ingression phase (Ingression II). Blocking the midblastula transition (MBT) by suppressing zygotic transcription through pharmacological or genetic means causes the absence of Ingression II, and consequently reduces furrow dimensions. The analysis of compound chromosomes that …

Daily And Seasonal Trends Of Electricity And Water Use On Pasture-Based Automatic Milking Dairy Farms, John Shortall, Bernadette O'Brien, Roy D. Sleator, J. Upton

Department of Biological Sciences Publications

The objective of this study was to identify the major electricity and water-consuming components of a pasture-based automatic milking (AM) system and to establish the daily and seasonal consumption trends. Electricity and water meters were installed on 7 seasonal calving pasture-based AM farms across Ireland. Electricity-consuming processes and equipment that were metered for consumption included milk cooling components, air compressors, AM unit(s), auxiliary water heaters, water pumps, lights, sockets, automatic manure scrapers, and so on. On-farm direct water-consuming processes and equipment were metered and included AM unit(s), auxiliary water heaters, tubular coolers, wash-down water pumps, livestock drinking water supply, and …

Curcumin Potentiates The Function Of Human Α7-Nicotinic Acetylcholine Receptors Expressed In Sh-Ep1 Cells, Eslam El Nebrisi, Lina T. Al Kury, Keun-Hang Susan Yang, Petrilla Jayaprakash, Frank Christopher Howarth, Nadine Kabbani, Murat Oz

Mathematics, Physics, and Computer Science Faculty Articles and Research

Effects of curcumin, a biologically active ingredient of turmeric, were tested on the Ca²⁺transients induced by the activation of α₇ subunit of the human nicotinic acetylcholine (α₇nACh) receptor expressed in SH-EP1 cells. Curcumin caused a significant potentiation of choline (1 mM)-induced Ca²⁺ transients with an EC₅₀ value of 133 nM. The potentiating effect of curcumin was not observed in Ca²⁺ transients induced by high K⁺ (60 mM) containing solutions or activation of α₄β₂ nACh receptors and the extent of curcumin potentiation was not altered in the presence of …

Highly Conserved Molecular Pathways, Including Wnt Signaling, Promote Functional Recovery From Spinal Cord Injury In Lampreys, Paige E. Herman, Angelos Papatheodorou, Stephanie A. Bryant, Courtney K. M. Waterbury, Joseph R. Herdy, Anthony A. Arcese, Joseph D. Buxbaum, Jeramiah J. Smith, Jennifer R. Morgan, Ona Bloom

Biology Faculty Publications

In mammals, spinal cord injury (SCI) leads to dramatic losses in neurons and synaptic connections, and consequently function. Unlike mammals, lampreys are vertebrates that undergo spontaneous regeneration and achieve functional recovery after SCI. Therefore our goal was to determine the complete transcriptional responses that occur after SCI in lampreys and to identify deeply conserved pathways that promote regeneration. We performed RNA-Seq on lamprey spinal cord and brain throughout the course of functional recovery. We describe complex transcriptional responses in the injured spinal cord, and somewhat surprisingly, also in the brain. Transcriptional responses to SCI in lampreys included transcription factor networks …

Landscape Genomics: Natural Selection Drives The Evolution Of Mitogenome In Penguins, Barbara Ramos, Daniel González-Acuña, David Loyola, Warren Johnson, Patricia Parker, Melanie Massaro, Gisele Dantas, Marcelo Miranda, Juliana Vianna

Biology Department Faculty Works

BackgroundMitochondria play a key role in the balance of energy and heat production, and therefore the mitochondrial genome is under natural selection by environmental temperature and food availability, since starvation can generate more efficient coupling of energy production. However, selection over mitochondrial DNA (mtDNA) genes has usually been evaluated at the population level. We sequenced by NGS 12 mitogenomes and with four published genomes, assessed genetic variation in ten penguin species distributed from the equator to Antarctica. Signatures of selection of 13 mitochondrial protein-coding genes were evaluated by comparing among species within and among genera (Spheniscus, Pygoscelis, Eudyptula, Eudyptes and …

Water Transport In The Lateral Line Canal Of The Intertidal Fish Xiphister Mucosus (Girard 1858) And Its Significance To Evaporative Water With Preliminary Observations Of The Metabolic Consequences Of Water Loss, Whitney Anne Gayer

Dissertations and Theses

The lateral line canal system is a sensory organ found in all teleost fish that has a wide range of morphological variation. Variation in morphology may often be the result of evolutionary necessity where the need for function dictates form. Xiphister mucosus is an amphibious Stichaeid fish that inhabits the rocky intertidal zone of the northeastern Pacific Ocean. The rocky intertidal is considered an extreme environment where crashing waves and ebbing tides may require the specialization of adaptations for surviving the many abiotic stressors encountered there.

The lateral line trunk canal of Xiphister is regarded as unique among teleosts with …

Novel Role Of Histone Deacetylase 11 (Hdac11) In Regulating Normal And Malignant Hematopoiesis, Jie Chen

USF Tampa Graduate Theses and Dissertations

During hematopoiesis, multilineage progenitor cells and the precursors are committed to individual hematopoietic lineages. In normal myelopoiesis, the immature myeloid cells (IMCs) differentiate into macrophages, neutrophils or dendritic cells. However, under tumor burden, these IMCs differentiate into myeloid derived suppressor cells (MDSCs) result in an up-regulation of immune suppressive factors and pro-tumor effect. The development of normal or malignant is tightly controlled by endogenous signals such as transcription factors and epigenetic regulations. HDAC11 is the newest identified members of the histone deacetylase (HDAC) family. Previous study in our group had identified HDAC11 as a negative regulator of interleukin 10 (IL-10) …

Cooperative Standing-Horizontalstanding Reentrant Transition For Numerous Solid Particles Under External Vibration, Satoshi Takatori, Hikari Baba, Takatoshi Ichino, Chwen-Yang Shew, Kenichi Yoshikawa

Publications and Research

We report the collective behavior of numerous plastic bolt-like particles exhibiting one of two distinct states, either standing stationary or horizontal accompanied by tumbling motion, when placed on a horizontal plate undergoing sinusoidal vertical vibration. Experimentally, we prepared an initial state in which all of the particles were standing except for a single particle that was placed at the center of the plate. Under continuous vertical vibration, the initially horizontal particle triggers neighboring particles to fall over into a horizontal state through tumbling-induced collision, and this effect gradually spreads to all of the particles, i.e., the number of horizontal particles …

Positioning Animal Welfare In The One Health Concept Through Evaluation Of An Animal Welfare Center In Skopje, Macedonia, Miroslav Radeski

Department of Biological Sciences Publications

The Animal Welfare Center (AWC) in Macedonia was established in 2009. The objectives of the center are animal welfare (AW) education, research, raising public awareness of AW, and increasing cooperation between the stakeholders. One Health (OH) was not the major focus of the AWC work initially, but, rather, a focus that evolved recently. The objective of this study was to evaluate the AWC from the OH perspective as an example case for positioning the AW within the overall OH concept. Three types of evaluation were performed: (1) assessment of OH-ness, by quantitative measurement of the operational and infrastructural aspects of …

The Effect Of Dairy Cow Breed On Milk Production, Cow Traffic And Milking Characteristics In A Pasture-Based Automatic Milking System, John Shortall, Cathriona Foley, Roy D. Sleator, Bernadette O'Brien

Dept. of Biological Sciences Preprints

Despite the increasing frequency of integrated automatic milking (AM) and pasture-based systems, there is limited knowledge available on the suitability of different dairy cow breeds to these systems. Thus, the objective of this experiment was to establish the performance of three breeds in a pasture-based AM system with respect to milk production, cow traffic and milking characteristics. The breeds examined were Holstein Friesian (HF), Jersey x HF (JEX) and Norwegian Red x HF (NRX), all of which have been previously identified as being compatible with conventional milking pasture-based systems. The experiment was conducted in mid-lactation and variables measured included milking …

Stream Microbial Communities Show Resistance To Pharmaceutical Exposure, E. J. Rosi, H. A. Bechtold, D. Snow, M. Rojas, A. J. Reisinger, J. J. Kelly

Biology: Faculty Publications and Other Works

Residues of pharmaceuticals are increasingly detected in surface waters throughout the world. In four streams in Baltimore, Maryland, USA, we detected analgesics, stimulants, antihistamines, and antibiotics using passive organic samplers. We exposed biofilm communities in these streams to the common drugs caffeine, cimetidine, ciprofloxacin, and diphenhydramine. Respiration rates in the least urban stream were suppressed when exposed to these drugs, but biofilm functioning in the most urban stream was resistant to drug exposure. Exposure to the antibiotic ciprofloxacin altered bacterial community composition at all sites, with the greatest change occurring in the most urban stream. These results indicated that continuous …

The Mayfly Newsletter, Donna J. Giberson

The Mayfly Newsletter

The Mayfly Newsletter is the official newsletter of the Permanent Committee of the International Conferences on Ephemeroptera.

Exploration Of The Germline Genome Of The Ciliate Chilodonella Uncinata Through Single-Cell Omics (Transcriptomics And Genomics), Xyrus X. Maurer-Alcalá, Rob Knight, Laura A. Katz

Biological Sciences: Faculty Publications

Separate germline and somatic genomes are found in numerous lineages across the eukaryotic tree of life, often separated into distinct tissues (e.g., in plants, animals, and fungi) or distinct nuclei sharing a common cytoplasm (e.g., in ciliates and some foraminifera). In ciliates, germline-limited (i.e., micronuclear-specific) DNA is eliminated during the development of a new somatic (i.e., macronuclear) genome in a process that is tightly linked to large-scale genome rearrangements, such as deletions and reordering of protein-coding sequences. Most studies of germline genome architecture in ciliates have focused on the model ciliates Oxytricha trifallax, Paramecium tetraurelia, and Tetrahymena thermophila, for which …

Characterization Of The Transcriptional Elongation Factor Ell3 In B Cells And Its Role In B-Cell Lymphoma Proliferation And Survival, Lou-Ella M.M. Alexander

USF Tampa Graduate Theses and Dissertations

The studies presented in this dissertation establish the dynamics of Eleven nineteen Lysine-rich leukemia (ELL) family of elongation factors during B cell differentiation and provide a description of ELL3 function in B cells.

The transition from a mature naïve B cells into an activated B cell is dependent on a large increase in transcriptional output, which is followed by focused expression on secreted immunoglobulin upon terminal differentiation into plasma cell. While ELL family members have previously been implicated in alternative splicing at the immunoglobulin heavy chain locus in plasma cells, their presence and function prior to differentiation is currently not …

Feeding Immunity: Physiological And Behavioral Responses To Infection And Resource Limitation, Sarah A. Budischak, Christina B. Hansen, Quentin Caudron, Romain Garnier, Tyler R. Kartzinel, István Pelczer, Clayton E. Cressler, Anieke Van Leeuwen, Andrea L. Graham

School of Biological Sciences: Faculty Publications

Resources are a core currency of species interactions and ecology in general (e.g., think of food webs or competition). Within parasite-infected hosts, resources are divided among the competing demands of host immunity and growth as well as parasite reproduction and growth. Effects of resources on immune responses are increasingly understood at the cellular level (e.g., metabolic predictors of effector function), but there has been limited consideration of how these effects scale up to affect individual energetic regimes (e.g., allocation trade-offs), susceptibility to infection, and feeding behavior (e.g., responses to local resource quality and quantity). We experimentally rewilded laboratory mice (strain …

Genuine Faculty-Mentored Research Experiences For In-Service Science Teachers: Increases In Science Knowledge, Perception, And Confidence Levels, Christine E. Cutucache, Heather D. Leas, Neal F. Grandgenett, Kari L. Nelson, Steven N. Rodie, Robert Duncan Shuster, Chris Schaben, William E. Tapprich

Biology Faculty Publications

The overall purpose of this multifocused study was to explore how participation in genuine mentored scientific research experiences impacts in-service science teachers and the knowledge and skills needed for their own science teaching. The research experiences resulted from a partnership between the University of Nebraska at Omaha and the Omaha Public School District. This Teacher- Researcher Partnership Program facilitated opportunities in inquiry, science content, interaction with laboratory instrumentation and technologies, critical discussion of literature, and dissemination of findings for participating in-service science teacher professional development utilizing an inquiry-based theoretical framework wherein we examined science teacher preparation via inquiry-based methods in …

Is There A Link Between Aging And Microbiome Diversity In Exceptional Mammalian Longevity?, Graham M. Hughes, John Leech, Sebastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling

Biology Faculty Articles

A changing microbiome has been linked to biological aging in mice and humans, suggesting a possible role of gut flora in pathogenic aging phenotypes. Many bat species have exceptional longevity given their body size and some can live up to ten times longer than expected with little signs of aging. This study explores the anal microbiome of the exceptionally long-lived Myotis myotis bat, investigating bacterial composition in both adult and juvenile bats to determine if the microbiome changes with age in a wild, long-lived non-model organism, using non-lethal sampling. The anal microbiome was sequenced using metabarcoding in more than 50 …

How The Egg Rolls: A Morphological Analysis Of Egg Shape In The Context Of Displacement Dynamics, Ian R. Hays

Theses and Dissertations

Very little is known about how morphology effects the motion, stability and the resulting viability of avian eggs. The limited research that exists focuses on the pyriform or ‘pointed’ egg shapes found in the Alcidea family. This unusual shell form is thought to suppress displacement and prevents egg loss on the cliffside nesting habitat of the Uria genera. Unfortunately, these studies never isolated or quantify the specific morphological features (elongation, asymmetry and conicality) of these pyriform eggs, which limits their applicability to other taxa and hampers a robust proof of concept. We isolated each feature as a variable, produced models …

Demonstration Of Translation Elongation Factor 3 Activity From A Non-Fungal Species, Phytophthora Infestans, Maria K. Mateyak, Justyna K. Pupek, Alexandra E. Garino, Mccllelan C. Knapp, Sarah F. Colmer, Terri Goss Kinzy, Stephen Dunaway

Faculty Publications – Biological Sciences

In most eukaryotic organisms, translation elongation requires two highly conserved elongation factors eEF1A and eEF2. Fungal systems are unique in requiring a third factor, the eukaryotic Elongation Factor 3 (eEF3). For decades, eEF3, a ribosome-dependent ATPase, was considered “fungal-specific”, however, recent bioinformatics analysis indicates it may be more widely distributed among other unicellular eukaryotes. In order to determine whether divergent eEF3-like proteins from other eukaryotic organisms can provide the essential functions of eEF3 in budding yeast, the eEF3-like proteins from Schizosaccharomyes pombe and an oomycete, Phytophthora infestans, were cloned and expressed in Saccharomyces cerevisiae. Plasmid shuffling experiments showed …

Exosomes Serve As Novel Modes Of Tick-Borne Flavivirus Transmission From Arthropod To Human Cells And Facilitates Dissemination Of Viral Rna And Proteins To The Vertebrate Neuronal Cells, Wenshuo Zhou, Michael Woodson, Biswas Neupane, Fengwei Bai, Michael B. Sherman, Kyung H. Choi, Girish Neelakanta, Hameeda Sultana

Faculty Publications

Molecular determinants and mechanisms of arthropod-borne flavivirus transmission to the vertebrate host are poorly understood. In this study, we show for the first time that a cell line from medically important arthropods, such as ticks, secretes extracellular vesicles (EVs) including exosomes that mediate transmission of flavivirus RNA and proteins to the human cells. Our study shows that tick-borne Langat virus (LGTV), a model pathogen closely related to tick-borne encephalitis virus (TBEV), profusely uses arthropod exosomes for transmission of viral RNA and proteins to the human- skin keratinocytes and blood endothelial cells. Cryo-electron microscopy showed the presence of purified arthropod/neuronal exosomes …

Comparison Of African And North American Velvet Ant Mimicry Complexes: Another Example Of Africa As The 'Odd Man Out', Joseph S. Wilson, Aaron D. Pan, Erica S. Limb, Kevin A. Williams

Biology Faculty Publications

Africa has the most tropical and subtropical land of any continent, yet has relatively low species richness in several taxa. This depauperate nature of the African tropical fauna and flora has led some to call Africa the “odd man out.” One exception to this pattern is velvet ants (Hymenoptera: Mutillidae), wingless wasps that are known for Müllerian mimicry. While North American velvet ants form one of the world’s largest mimicry complexes, mimicry in African species has not been investigated. Here we ask do African velvet ant Müllerian mimicry rings exist, and how do they compare to the North American complex. …

Habitat Classification Of The Gulf Of Mexico (Gom) Using The Hybrid Coordinate Ocean Model (Hycom) And Salinity/Temperature Profiles, Cruises Dp01-Dp04, May 2015 To August 2016, Matt Johnston, Rosanna Milligan, Cole Easson, Sergio Derada, Brad Penta, Tracey Sutton

DEEPEND Datasets

Deep pelagic habitat from the entire Gulf of Mexico (GOM) was classified using the deviation of sea surface height (SSH) from mean SSH for the entire GOM and water temperature at 300 m water depth, founded on ocean condition data from the 1/25° GOM HYbrid Coordinate Ocean Model (HYCOM). Pelagic habitats were segregated into anticyclonic, mixed boundaries, and common water units – all of which likely produce varying levels of forage for deep-sea fauna and may be trophic drivers. Model classifications were compared to classifications based on water column temperature and salinity at depth, as measured by CTD casts during …

Ideonella Sakaiensis: The Bacterium That Eats Pet, David Edlund

Natural Sciences Student Research Presentations

This poster for the Natural Science Poster Session at Parkland College features information on Ideonella sakaiensis, bacterium that breaks down polyethylene terepthalate, and describes how it may have potential to reduce the environmental impact of plastics.