Biology Commons^™

Mechanism Of Action And Applications Of Interleukin 24 In Immunotherapy, Leah Persaud, Dayenny De Jesus, Oliver Brannigan, Maria Richiez-Paredes, Jeannette Huaman, Giselle Alvarado, Linda Riker, Gissete Mendez, Jordan Dejoie, Moira Sauane

Publications and Research

Interleukin 24 (IL-24) is an important pleiotropic immunoregulatory cytokine, whose gene is located in human chromosome 1q32-33. IL-24’s signaling pathways have diverse biological functions related to cell differentiation, proliferation, development, apoptosis, and inflammation, placing it at the center of an active area of research. IL-24 is well known for its apoptotic effect in cancer cells while having no such effect on normal cells. IL-24 can also be secreted by both immune and non-immune cells. Downstream effects of IL-24, after binding to the IL-20 receptor, can occur dependently or independently of the JAK/STAT signal transduction pathway, which is classically involved in …

Stranding Mortality Patterns In California Sea Lions And Steller Sea Lions In Oregon And Southern Washington, 2006 To 2014, Kessina Lee

Dissertations and Theses

As changing ocean conditions lead to declining fish stocks and movement of forage fish, sea lions on the Oregon coast are subject to the pressures of declining prey availability and increasing conflicts with commercial and recreational fisheries. An analysis of strandings of California sea lions, Zalophus californianus, and Steller sea lions, Eumetopias jubatus, from 2006 to 2014, included cause of death, changing ocean conditions, and anthropogenic activity. Causes of death included disease, injury, and human interaction, such as gunshot wounds, fisheries net entanglements and boat strikes.

Oregon and Washington strandings of California sea lions are primarily adult and …

Nesting Ecology Of The Northern Beardless-Tyrannulet (Camptostoma Imberbe) In The Lower Rio Grande Valley Of Texas, Usa, Scott M. Werner, Sallie J. Hejl, Timothy Brush

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Biology)

During 2002–2003, we studied the breeding ecology of the Northern Beardless-Tyrannulet (Camptostoma imberbe), a poorly known and rare permanent resident in the Lower Rio Grande Valley of Texas, United States of America. We found 28 nests in clusters of Spanish moss (Tillandsia usneoides) or ball moss (T. recurvata), 93% of which were in cedar elm (Ulmus crassifolia) trees. Nest-building, incubation, and nestling periods averaged 7.0, 14.0, and 18.5 days, respectively. Of the 28 nests, 43% were successful, while 38% of the failed nests showed obvious signs of depredation. Nests were located in …

Modeling Observed Animal Performance Using The Weibull Distribution, Travis J. Hagey, Jonathan B. Puthoff, Kristen E. Crandell, Kellar Autumn, Luke J. Harmon

Biology

To understand how organisms adapt, researchers must link performance and microhabitat. However, measuring performance, especially maximum performance, can sometimes be difficult. Here, we describe an improvement over previous techniques that only consider the largest observed values as maxima. Instead, we model expected performance observations via the Weibull distribution, a statistical approach that reduces the impact of rare observations. After calculating group-level weighted averages and variances by treating individuals separately to reduce pseudoreplication, our approach resulted in high statistical power despite small sample sizes. We fitted lizard adhesive performance and bite force data to the Weibull distribution and found that it …

Injury Severity Data For Front And Second Row Passengers In Frontal Crashes, Theresa Atkinson, Leszek Gawarecki, Massoud Tavakoli

Crash Safety Center Publications

The data contained here were obtained from the National Highway Transportation Safety Administration׳s National Automotive Sampling System – Crashworthiness Data System (NASS-CDS) for the years 2008–2014. This publically available data set monitors motor vehicle crashes in the United States, using a stratified random sample frame, resulting in information on approximately 5000 crashes each year that can be utilized to create national estimates for crashes. The NASS-CDS data sets document vehicle, crash, and occupant factors. These data can be utilized to examine public health, law enforcement, roadway planning, and vehicle design issues. The data provided in this brief are a subset …

Ion And Water Balance In Gryllus Crickets During The First Twelve Hours Of Cold Exposure., Lauren E Des Marteaux, Brent J Sinclair

Biology Publications

Insects lose ion and water balance during chilling, but the mechanisms underlying this phenomenon are based on patterns of ion and water balance observed in the later stages of cold exposure (12 or more hours). Here we quantified the distribution of ions and water in the hemolymph, muscle, and gut in adult Gryllus field crickets during the first 12h of cold exposure to test mechanistic hypotheses about why homeostasis is lost in the cold, and how chill-tolerant insects might maintain homeostasis to lower temperatures. Unlike in later chill coma, hemolymph [Na(+)] and Na(+) content in the first few hours of …

Reproductive Arrest And Stress Resistance In Winter-Acclimated Drosophila Suzukii., Jantina Toxopeus, Ruth Jakobs, Laura V Ferguson, Tara D Gariepy, Brent J Sinclair

Biology Publications

Overwintering insects must survive the multiple-stress environment of winter, which includes low temperatures, reduced food and water availability, and cold-active pathogens. Many insects overwinter in diapause, a developmental arrest associated with high stress tolerance. Drosophila suzukii (Diptera: Drosophilidae), spotted wing drosophila, is an invasive agricultural pest worldwide. Its ability to overwinter and therefore establish in temperate regions could have severe implications for fruit crop industries. We demonstrate here that laboratory populations of Canadian D. suzukii larvae reared under short-day, low temperature, conditions develop into dark 'winter morph' adults similar to those reported globally from field captures, and observed by us …

Assessment Of Tick Antioxidant Responses To Exogenous Oxidative Stressors And Insight Into The Role Of Catalase In The Reproductive Fitness Of The Gulf Coast Tick, Amblyomma Maculatum, D. Kumar, K. Budachetri, V.C. Meyers, Shahid Karim

Faculty Publications

As obligate blood‐sucking ectoparasites, to avoid tissue damage, ticks must neutralize the reactive oxygen species (ROS) generated from uptake and digestion of a bloodmeal. Consequently, ticks utilize a battery of antioxidant molecules, including catalase (CAT), an enzyme that converts hydrogen peroxide (H₂O₂) into water and oxygen. Here, we investigated the tick antioxidant machinery by exogenous injection of sublethal doses of H₂O₂ or paraquat. The relative transcript levels of selected Amblyomma maculatum antioxidant targets in tissues were determined by quantitative reverse transcriptase PCR following treatment. The results showed 2–16‐fold increases in target antioxidant gene …

Biological Sciences Newsletter - June 2016, Department Of Biological Sciences, East Tennessee State University

Biological Sciences Newsletters

No abstract provided.

Genome-Wide Differentiation In Closely Related Populations: The Roles Of Selection And Geographic Isolation, Rebecca Safran, Elizabeth Scordato, Matt Wilkins, Joanna K. Hubbard, B. R. Jenkins, Tomáš Albrecht, Samuel Flaxman, H. Karaardiç, Yoni Vortman, Arnon Lotem, Patrik Nosil, P. Pap, Sheng-Feng Shen, S.-F. Chan, T. L. Parchman, Nolan C. Kane

School of Biological Sciences: Faculty Publications

Population divergence in geographic isolation is due to a combination of factors. Natural and sexual selection may be important in shaping patterns of population differentiation, a pattern referred to as “isolation by adaptation” (IBA). IBA can be complementary to the well-known pattern of “isolation by distance” (IBD), in which the divergence of closely related populations (via any evolutionary process) is associated with geographic isolation. The barn swallow Hirundo rustica complex comprises six closely related subspecies, where divergent sexual selection is associated with phenotypic differentiation among allopatric populations. To investigate the relative contributions of selection and geographic distance to genome-wide differentiation, …

Alternative Functions For The Multifarious Inflammasome, J. Martel, H. C. Lai, Y. F. Ko, J. D. Young, David M. Ojcius

All Dugoni School of Dentistry Faculty Articles

The inflammasome has been mainly studied in innate immune cells in which it senses microbes and cellular damage, and induces secretion of pro-inflammatory cytokines. This process induces an inflammatory response that is critical for the resolution of infections and repair of tissue damage following injury. Recent studies indicate that inflammasome complex formation also participates in many other cellular and physiological processes beyond modulation of inflammation, such as autophagy, metabolism, eicosanoids production, and phagosome maturation.

The Tettigoniidae (Orthoptera: Ensifera): Phylogeny, Origins, And Leaf-Like Crypsis, Joseph D. Mugleston

Theses and Dissertations

Tettigoniidae (katydids) has more than 7200 species and is the largest family within the insect order Orthoptera. Their unique biology including leaf-like crypsis, acoustic signaling, and courtship rituals garners much of their academic attention. However, the taxonomy of katydids is chaotic and previous to these studies, little work had been done to decipher the phylogenetic relationships within this family. Without a robust phylogenetic framework, questions regarding the evolution of katydid disguises including the leaf-like crypsis cannot be addressed. This dissertation contains three chapters. Chapter 1 provides the first phylogenetic hypothesis focusing on Tettigoniidae. In this chapter we show a character …

Building A Freshwater Bacterial Flora Database For Remote Sensing Applications, Daniel Zimmerman, Laura Moore, J. A. Concha, N. Raqueño, Maryann Herman, Fernando Ontiveros

Undergraduate External Publications

The identification and classification of microbial flora in bodies of fresh water has the potential of enhancing our understanding of this ecosystem and improving water management and bioremediation. This effort may be facilitated by the use of remote sensing technologies. For the last 3 years our undergraduate students have collected water samples in the Lake Ontario Rochester Embayment and Irondequoit Bay with the goal of constructing a database of bacterial species and water parameters (e.g. organic matter and chlorophyl content). Such a database is necessary to establish potential correlations between the presence of certain bacterial species and water parameters that …

A Novel Caloric Restriction-Like Mimetic Affects Longevity In Yeast By Reprogramming Core Metabolic Pathways, Jonathan I. Millen, Gregory Tombline, Bogdan Polevoda, Matan Rapaport, Bonnie Baxter, Andy Cannon, David S. Goldfarb

Biology Faculty/Staff Publications

Glucose limitation is a simple intervention that extends yeast replicative lifespan (RLS) via the same pathway(s) thought to mediate the benefits of caloric restriction (CR) in mammals. Here we report on “C1”, a small molecule that mimics key aspects of CR. C1 was identified in a high throughput screen for drug-like molecules that reverse the RLS shortening effect of the sirtuin inhibitor and NAD+ precursor nicotinamide. C1 reduces the cellular dependence on glycolysis and the pentose phosphate pathway, even in the presence of glucose, and compensates by elevating fatty acid -oxidation to maintain acetyl-CoA levels. C1 acts either downstream of …

Evaluating The Myth Of Allelopathy In California Blue Gum Plantations, Kristen Marie Nelson

Master's Theses

It is widely accepted that allelopathy is not only significant, but more or less singular, in the inhibition of understory vegetation in California Eucalyptus globulus (blue gum) plantations. However, there is no published documentation of allelopathy by blue gums against California native species. Here, we present evidence that germination and early seedling growth of five California native species are not inhibited by chemical extracts of blue gum foliage, either at naturally-occurring or artificially concentrated levels. In the greenhouse, seeds were germinated in field-collected soil from mature blue gum plantations and the adjacent native, coastal scrub communities. In petri plates, seeds …

Upper, Lower Solutions And Analytic Semigroups For A Model With Diffusion, Yannick T. Kouakep

Applications and Applied Mathematics: An International Journal (AAM)

In this discussion we consider an autonomous parabolic epidemic 2-dimensional system modelling the dynamics of transmission of immunizing diseases for a closed population into bounded regular domain. Our model takes into account diffusion of population with external influx as well as one class of infected individuals. We study the well-posedness two-component diffusion equations including external supplies with Neumann conditions using upper/lower solutions and analytic semigroups. In case of constant population or not, with non-oscillatory solution and constant diffusion, this problem admits travelling wave solutions whose minimum wave speed is surveyed here.

The Role Of Daf-19 In Non-Ciliated Neurons: How Is Neural Development Regulated By Different Daf-19 Isoforms?, Zabdiel Ek Vazquez

Lawrence University Honors Projects

A degenerative disease-like phenotype, specifically reduction in synaptic protein levels in adult worms, is correlated with loss-of-function of the only RFX transcription factor gene, daf-19, in C. elegans. This gene encodes four known transcription factor isoforms, two of which are correlated with particular functions. The DAF-19C isoform activates genes responsible for cilia development, while DAF-19M is needed for cilia specification in males. A comparison of the transcriptome of daf-19 null and isogenic wild type adult worms suggests both positive and negative regulation of gene expression is correlated with the presence of DAF-19 proteins. We have assessed DAF-19 regulation …

Assessment Of Daf-19 Related Behavioral Defects, Loraina A. Stinson

Lawrence University Honors Projects

The daf-19 gene encodes the only RFX transcription factors in C. elegans, producing at least four related protein isoforms, one of which, DAF-19C, is responsible for ciliogenesis. Previous work by Senti and Swoboda (2008) demonstrated that adult worms deficient in all four DAF-19 proteins have extremely aberrant dwelling and roaming behavior on bacterial food. Most intriguingly, the addition of cDNA encoding the DAF-19C isoform restores cilia formation, but does not fully restore wild-type dwelling and roaming behavior. We are suggesting that additional neuron functions are needed to properly execute behaviors and these neuron functions require the activity of other …

Absence Of The Filarial Endosymbiont Wolbachia In Seal Heartworm (Acanthocheilonema Spirocauda) But Evidence Of Ancient Lateral Gene Transfer, Caroline D. Keroack, Jenna Irene Wurster, Caroline G. Decker, Kalini M. Williams, Barton E. Slatko, Jeremy M. Forster, Steven A. Williams

Biological Sciences: Faculty Publications

The symbiotic relationship of Wolbachia spp. was first observed in insects and subsequently in many parasitic filarial nematodes. This bacterium is believed to provide metabolic and developmental assistance to filarial parasitic nematodes, although the exact nature of this relationship remains to be fully elucidated. While Wolbachia is present in most filarial nematodes in the familyOnchocercidae, it is absent in several disparate species such as the human parasite Loa loa. All tested members of the genusAcanthocheilonema, such as Acanthocheilonema viteae, have been shown to lack Wolbachia. Consistent with this, we show thatWolbachia is absent from the seal heartworm (Acanthocheilonema spirocauda), but …

Proteolytic Cleavage Of Apolipoprotein E In The Down Syndrome Brain, Ryan J. Day, Katie L. Mccarty, Kayla E. Ockerse, Elizabeth Head, Troy T. Rohn

Biology Faculty Publications and Presentations

Down syndrome (DS) is one of the most common genetic causes of intellectual disability and is characterized by a number of behavioral as well as cognitive symptoms. Many of the neuropathological features of early-onset Alzheimer’s disease (AD) including senile plaques and neurofibrillary tangles (NFTs) are also present in people with DS as a result of triplication of the amyloid precursor gene on chromosome 21. Evidence suggests that harboring one or both apolipoprotein E4 (APOE4) alleles may increase the risk for AD due to the proteolytic cleavage of apoE4 and a subsequent loss of function. To investigate a role …

Mid- And Long-Term Effects Of Wildfire And Debris Flows On Stream Ecosystem Metabolism, Quenton M. Tuckett, Peter Koetsier

Biology Faculty Publications and Presentations

Wildfire is an important and prevalent agent of disturbance in vegetated landscapes across much of the Earth’s surface, including forested watersheds in the arid western USA. Between 1992 and 2003, >40% of the watersheds in the upper reaches of the Boise River watershed in central Idaho burned. The purpose of our study was to investigate the legacy effects of wildfire on stream ecosystems by analyzing the relationship between wildfire and resulting debris flows and their joint effects on stream ecosystem metabolism in 31 streams. The watersheds of ∼½ of these streams burned within the last 11 y, and some of …

Quantifying Wing Shape And Size Of Saturniid Moths With Geometric Morphometrics, Minjia Zhong, Geena M. Hill, Jesse R. Barber, Akito Y. Kawahara

Biology Faculty Publications and Presentations

Butterflies and moths exhibit a spectacular diversity of w in g sh ape and size. The extent of wing variation is particularly evident in wild silk moths (Saturniidae), which have large wing shape and size variation. Some species have jagged wing margins, rounded forewing apical lobes, or narrow hind wings with long tails, while others lack these traits entirely. Surprisingly, very little work has been done to formally quantify wing variation within the family. We analyzed the hind wing shape and size of 76 saturniid species representing 52 genera across five subfamilies using geometric morphometrics. We identified fifteen landmarks that …

Color Image Encryption And Decryption Using Hill Cipher Associated With Arnold Transform, Rakesh Ranjan, R. K. Sharma, M. Hanmandlu

Applications and Applied Mathematics: An International Journal (AAM)

Image security over open network transmission is a big concern nowadays. This paper proposes another methodology for color image encoding and decoding using two stage Hill Cipher method which is connected with Arnold Transformation. The forgoing created a strategy for encryption and decryption of color image information and touched on just the premise of keys. In this plan, keys and the agreement of Hill Cipher (HC) are basic. Moreover, keys multiplication (pre or post) over an RGB image information framework is inevitable to know to effectively decrypt the first image information. We have given a machine simulation with a standard …

Digital Fragment Analysis Of Short Tandem Repeats By High‐Throughput Amplicon Sequencing, Brian J. Darby, Shay F. Erickson, Samuel D. Hervey, Susan N. Ellis-Felege

Biology Faculty Publications

High‐throughput sequencing has been proposed as a method to genotype microsatellites and overcome the four main technical drawbacks of capillary electrophoresis: amplification artifacts, imprecise sizing, length homoplasy, and limited multiplex capability. The objective of this project was to test a high‐throughput amplicon sequencing approach to fragment analysis of short tandem repeats and characterize its advantages and disadvantages against traditional capillary electrophoresis. We amplified and sequenced 12 muskrat microsatellite loci from 180 muskrat specimens and analyzed the sequencing data for precision of allele calling, propensity for amplification or sequencing artifacts, and for evidence of length homoplasy. Of the 294 total alleles, …

Molecular Studies Of South American Teiid Lizards (Teiidae: Squamata) From Deep Time To Shallow Divergences, Derek B. Tucker

Theses and Dissertations

I focus on phylogenetic relationships of teiid lizards beginning with generic and species relationship within the family, followed by a detailed biogeographical examination of the Caribbean genus Pholidoscelis, and end by studying species boundaries and phylogeographic patterns of the widespread Giant Ameiva Ameiva ameiva. Genomic data (488,656 bp of aligned nuclear DNA) recovered a well-supported phylogeny for Teiidae, showing monophyly for 18 genera including those recently described using morphology and smaller molecular datasets. All three methods of phylogenetic estimation (two species tree, one concatenation) recovered identical topologies except for some relationships within the subfamily Tupinambinae (i.e. position of …

Evaluation Of The Estrogenic And Osmoregulatory Impacts Of Exposure To 4-Nonylphenol Pollution In The Estuarine Arrow Goby, Clevelandia Ios, Kaitlin Marie Johnson

Master's Theses

Recent evidence indicates that some of California’s coastal estuaries are contaminated with the chemical 4-nonylphenol (4-NP). Tissue burdens of 4-NP detected in the intertidal arrow goby (Clevelandia ios) in California are among the highest recorded worldwide, however, it remains unknown whether these fish are impacted by this 4-NP contamination. 4-NP is an established endocrine disrupting compound with estrogenic properties that can alter reproductive function. Furthermore, evidence that estrogens can modulate iono- and osmo-regulatory function in fishes implies that estuarine fishes exposed to 4-NP may also experience an impaired ability to maintain hydromineral balance. In Chapter 1 of this …

Influencing Pathways That Cause Metastasis And Stemness In Epithelial Ovarian Cancer, Alyse Lynn Huisken-Hill

Electronic Theses, Projects, and Dissertations

Ovarian cancer is the fifth leading cause of cancer death in women between the ages of 35 and 74. With 22 thousand new cases and 15 thousand deaths annually ovarian cancer is among the most deadly cancers with a death to incidence ratio of 68%. With 70% of cases High Grade Serous Ovarian Carcinoma (HGSOC) is the most common type of ovarian cancer and causes 90% of ovarian cancer deaths. 80% of patients have reoccurrence within five years and only 15-30% of patients with recurrent metastatic ovarian cancer respond to current therapies, chemotherapy and surgery. One reason for the high …

Review Of "The Least Likely Man: Marshall Nirenberg And The Discovery Of The Genetic Code" By F. H. Portugal, John B. Jenkins

Biology Faculty Works

No abstract provided.

Management Of Sclerotium Rolfssi Through Methanolic Leaf Extract Of Alstonia Scholaris (L.) R. Br. And Azadirachta Indica L., Beenish Zia Butt, Nighat Sana, Saba Butt

Journal of Bioresource Management

Sclerotium rolfsii is a polyphagous soil borne fungus infecting more than 500 plant species across the world that is causing vast losses. Although the fungus is soil and seed borne, soil borne inoculum is most vital in infection-causing and syndrome development. Treating soil borne pathogens with fungicides is not reasonable due to very high costs. Environmental hazards are also involved. Therefore, integrated management of pathogens using biological controlling agents is the paramount alternative. Extracts of higher plants have demonstrated a wide range of activity against plant pathogenic organisms. The present research work was carried out to manage the pathogen and …

Microwave Assisted Extraction Of Phenolics From Trachyspermum Ammi (L.) Sprague, Sumera Javad, Maimoona Mubarik, Arusa Aftab, Amina Tariq

Journal of Bioresource Management

Trachyspermum ammi (L.) Sprague is an annual herbaceous plant belonging to the family Apiaceae and is mostly administered for stomach disorders. During the present research work, cold maceration and Microwave Assisted Extraction (MAE) of T. ammi Sprague was done by using methanol, dichloromethane and n-hexane separately as extracting solvents. For cold maceration, 2, 4, 6, 18 and 24 hours of time durations were used for each solvent. Maximum extract (50mg/g) was obtained at 18 hours of cold maceration with methanol, while maximum phenolics were also obtained from the same extract, which were calculated to be 170.89μg/g equivalent of Gallic acid. …