Biology Commons^™

Analyzing Urine In Mice With Tyrosinemia Type 1 Using Nmr Spectroscopy, Emily Olsen

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

Human Anatomy And Physiology Preparatory Course: Part 4 Of 4 (Interactive), Carlos Liachovitzky

Open Educational Resources

The overall purpose of these preparatory course set of learning objectives is to help students familiarize with some terms and some basic concepts they will find later in the Human Anatomy and Physiology I course.

These 40+ learning objectives to prepare for Human Anatomy and Physiology can be downloaded and played in a desktop, or laptop (windows exe file).

The entire course has four parts:

• Part 1
• Part 2
• Part 3
• Part 4

Each learning objective is followed by a set of multiple choice question similar to those found later in a Human Anatomy and Physiology course.

Evidence Of Morphological Variation Between Bluegill Lepomis Macrochirus Rafinesque, 1819 Populations Across Grand Lake St. Mary’S Watershed, Anthony Jerome Bell

Browse all Theses and Dissertations

A myriad of factors have been shown to affect the morphology of freshwater fish. Despite the growing base of ecomorphology literature there is little information available exploring how these factors relate to body morphology of Centrarchidae, specifically in the Lepomis genera. Therefore, the objective of this study was to describe variation in body morphology of Bluegill (Lepomis macrochirus) across Grand Lake St. Mary’s watershed area and test for covariation of morphology with size, sex, and habitat. Geometric morphometric methods were used to assess variation among individuals and general linear models were used to test for covariation of morphology with size, …

How Specialist And Generalist Herbivores Are Responding To Invasive Plant Threats, Lauren Elizabeth Shewhart

Browse all Theses and Dissertations

The purpose of this study was to investigate novel interactions of native herbivores (Abia inflata, Abia americana, Zaschizonyx montana, and Hyphantria cunea) with non-native plants in Ohio. No-choice and choice bioassays were conducted with adults and larvae to examine life history traits, performance, and preference of these herbivores feeding exclusively on native and non-native species and damaged and undamaged foliage. It was found that all organisms in this study can perform well and complete their whole life cycle on L. maackii. Adult A. americana will oviposit in non-native hosts however newly emerged larvae have …

The Genomics Of Speciation Within The Globally Distributed Blue-Winged Ducks, Joel Thomas Nelson

Browse all Theses and Dissertations

The ability to disperse over long distances can result in a high propensity for colonizing new geographic regions and lead to lineage diversification via allopatric speciation. However, high vagility can also result in gene flow between otherwise allopatric populations, and in some cases, parapatric or divergence-with-gene-flow models of speciation might be more applicable to widely distributed lineages. Here, I used five nuclear introns and the mitochondrial control region to examine divergence, gene flow, and phylogenetic relationships within a cosmopolitan lineage comprising six species, the blue-winged ducks (genus Anas), which inhabit all continents except Antarctica. I found two primary sub-lineages, the …

Parasitoid Communities Of Remnant And Constructed Prairie Fragments In Western Ohio, Michael Drew Sheaffer

Browse all Theses and Dissertations

The ability of organisms to disperse to, utilize, and persist in novel habitats in a fragmented landscape is vital to the success of many ecosystem restoration and construction efforts. With less than four percent of original tallgrass prairie persisting across its range, conservationists have made efforts to both protect and restore remnant prairies as well as to plant new prairies. Previous studies suggest that restored ecosystems do not support the same levels of biodiversity and ecosystems services as their remnant counterparts. In this study I measured tachinid fly diversity and orthopteran parasitism rates in order to assess ecological similarity of …

Genetic Analysis Of Male-Specific Lethality Between Caenorhabditis Briggsae:: Caenorhabditis Nigoni F1 Hybrids, Vaishnavi Ragavapuram

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Speciation occurs when there is a lack of reproduction due to genetic barriers. These genetic barriers to gene flow are referred as reproductive isolation mechanisms. Pre-zygotic and post-zygotic isolation are types of reproductive isolation mechanisms. In this project, post-zygotic isolation mechanisms were examined. Haldane's Rule states that in F1 hybrids, individuals of the heterogametic sex are less fit than those of the homogametic sex. Darwin's Corollary to Haldane's rule states that there is asymmetry in hybrid progeny between interspecific reciprocal crosses. Crosses done between Caenorhabditis briggsae males to Caenorhabditis nigoni females produce viable F1 hybrid females and males, yet the …

Genomic Signatures Of Population History In A Pair Of Recently Diverged Australian Teal Support Strong Selection On The Z Sex-Chromosome, Kevin Kyle Hawkins

Browse all Theses and Dissertations

Sex chromosomes are thought to be an important component of the genome associated with speciation and the buildup of reproductive isolation. Recent advances in sequencing technologies and improvements in population genetics and modeling techniques have made it possible to better assess genomic signatures of selection, genetic drift and gene flow in diverging lineages. Recent studies have shown elevated differentiation on the Z sex-chromosome between the Australian grey teal (Anas gracilis) and chestnut teal (Anas castanea). Here, we used next generation sequencing to scan ~3,400 autosomal loci and ~190 Z loci to examine genomic differentiation and signatures of selection and gene …

Chemosensitivity In Mealworms And Darkling Beetles (Tenebrio Molitor) Across Oxygen And Carbon Dioxide Gradients, Andrew King Patterson

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Breathing in most insects is controlled through a negative feedback loop consisting of signals (O₂, CO₂, pH), sensors (chemoreceptors), integrators (neural ganglia), and effectors (spiracles over tracheae). I hypothesized that mealworms and their adult counterparts Darkling beetles, Tenebrio molitor, can sense anoxic and hyperoxic environments and preferentially avoid these environments. I also hypothesize that mealworms are attracted to hypercarbia while Darkling beetles avoid hypercarbia. I constructed a test arena to create an O₂ or CO₂ gradient. Velocity, total distance traveled, and time spent in each area of the O₂ or CO₂ gradients …

The Effects Of Various Laundering Factors On The Recoverability Of Dna, Erin L. Houston

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Criminals have been documented to launder clothing in an attempt to hide evidence; however, there limited studies on this type of evidence manipulation. This study looked at: 1) the effects of eighteen laundry additives at diluted and undiluted strengths on human blood, 2) the effects of a delay between deposit and laundering, 3) the amount of recoverable DNA on laundered clothing with different deposited volumes of blood, and 4) the transfer of genetic material within a primary load and between primary/secondary and primary/tertiary loads. There was a reduction in volume of DNA for some laundry additives. Nevertheless, all genotyped samples …

Intrinsic And Extrinsic Regulation Of Pineal Melatonin Rhythms, Ye Li

Theses and Dissertations--Biology

Circadian rhythm is a biological rhythm with period of about 24 hours. Circadian rhythm is universal in phyla from bacteria to mammals and exists in different level from gene expression to behavior. Circadian system consists of three components: 1) a self-sustained oscillator; 2) an input pathway which can alter the phase of the oscillator; and 3) an output such as gene expression, enzyme activity, hormone production, heart rate, body temperature or locomotor activities. The way the oscillator regulates its outputs is complicated, in that on one hand usually the oscillator is not the only factor affecting the outputs, and on …

Characterization Of Somatically-Eliminated Genes During Development Of The Sea Lamprey (Petromyzon Marinus), Stephanie A. Bryant

Theses and Dissertations--Biology

The sea lamprey (Petromyzon marinus) undergoes programmed genome rearrangements (PGRs) during early development that facilitate the elimination of ~20% of the genome from the somatic cell lineage, resulting in distinct somatic and germline genomes. To improve our understanding of the evolutionary/developmental logic of PGR, we generated computational predictions to identify candidate germline-specific genes within a transcriptomic dataset derived from adult germline and the embryonic stages encompassing PGR. Validation studies identified 44 germline-specific genes and characterized patterns of transcription and DNA loss during early embryogenesis. Expression analyses reveal that several of these genes are differentially expressed during early embryogenesis …

Powerful Association Test Combining Rare Variant And Gene Expression Using Family Data From Genetic Analysis Workshop 19, Yen Yi Ho, Weihua Guan, Michael O'Connell, Saonli Basu

Faculty Publications

Background: Genetic association studies aim to test for disease or trait association with genetic variants, either throughout the human genome or in regions of interest. However, for most diseases and traits, the combined effects of associated genetic variants explain only a small proportion of the genetic variation. This "missing heritability" may be a result of the small effects of common variants considered in the genetic association studies. Rare variants may also play an important role in understanding the missing heritability of complex traits. Method: We propose a novel weight-adjustment approach to combine gene expression into rare variant analysis. Results from …

The Evolution Of Aquatic Mammals Toward A Nearly Universal Large Size? Evidence From Phylogenetics And Fossils, William Gearty, Craig R. Mcclain, Jonathan Payne

School of Biological Sciences: Presentations

Most mammal species live on land, but the largest mammals live in the oceans. Aquatic and terrestrial habitats clearly impose differing selective pressures on body size. However, the quantitative study of body size evolution in mammals and other major animal clades typically focuses on either terrestrial or marine clades independently, thus failing to capture the dynamics of size evolution associated with the transition between land and water. Consequently, the extent to which the rate, magnitude, and outcome of size change associated with habitat transitions are shared among clades remains unknown, leaving open the question of whether the apparently common phenomenon …

A Dataset For Assessing Temporal Changes In Gene Expression During The Aging Process Of Adult Drosophila Melanogaster, Kimberly A. Carlson, Chi Zhang, Lawrence G. Harshman

School of Biological Sciences: Faculty Publications

A Drosophila melanogaster genome-wide transcriptome dataset is

available for studies on temporal patterns of gene expression. Gene

expression was measured using two-dye color oligonucleotide arrays

derived from Version 2 of the Drosophila Genomics Resource Center.

A total of 15,158 oligonucleotide probes corresponded to a high

proportion of the coding genes in the genome. The source of the flies

was a highly genetically heterogeneous population maintained in an

overlapping generation population regime. This regime was

designed to maintain life history traits so that they were similar to

those found in natural populations. Flies collected for the cohorts

were obtained in a …

Genome Sequence Of Streptomyces Aureofaciens Atcc Strain 10762, Julien Gradnigo, Greg Somerville, Michael J. Huether, Richard J. Kemmy, Craig M. Johnson, Michael G. Oliver, Etsuko N. Moriyama

School of Biological Sciences: Faculty Publications

Streptomyces aureofaciens is a Gram-positive actinomycete that produces the antibiotics tetracycline and chlortetracycline. Here, we report the assembly and initial annotation of the draft genome sequence of S. aureofaciens ATCC strain 10762.

Candida Albicans Isw2 Regulates Chlamydospore Suspensor Cell Formation And Virulence In Vivo In A Mouse Model Of Disseminated Candidiasis, Dhammika Navarathna, Ruvini U. Pathirana, Michail S. Lionakis, Kenneth W. Nickerson, David D. Roberts

School of Biological Sciences: Faculty Publications

Formation of chlamydospores by Candida albicans was an established medical diagnostic test to confirm candidiasis before the molecular era. However, the functional role and pathological relevance of this in vitro morphological transition to pathogenesis in vivo remain unclear. We compared the physical properties of in vitro-induced chlamydospores with those of large C. albicans cells purified by density gradient centrifugation from Candida infected mouse kidneys. The morphological and physical properties of these cells in kidneys of mice infected intravenously with wild type C. albicans confirmed that chlamydospores can form in infected kidneys. A previously reported chlamydospore-null Δisw2/ …

Targeted Therapy For Acute Autoimmune Myocarditis With Nano-Sized Liposomal Fk506 In Rats, Keiji Okuda, Hai Ying Fu, Takashi Matsuzaki, Ryo Araki, Shota Tsuchida, Punniyakoti V. Thanikachalam, Tatsuya Fukuta, Tomohiro Asai, Masaki Yamato, Shoji Sanada, Hiroshi Asanuma, Yoshihiro Asano, Masanori Asakura, Haruo Hanawa, Hiroyuki Hao, Naoto Oku, Seiji Takashima, Masafumi Kitakaze, Yasushi Sakata, Tetsuo Minamino

School of Biological Sciences: Faculty Publications

Immunosuppressive agents are used for the treatment of immune-mediated myocarditis; however, the need to develop a more effective therapeutic approach remains. Nano-sized liposomes may accumulate in and selectively deliver drugs to an inflammatory lesion with enhanced vascular permeability. The aims of this study were to investigate the distribution of liposomal FK506, an immunosuppressive drug encapsulated within liposomes, and the drug’s effects on cardiac function in a rat experimental autoimmune myocarditis (EAM) model. We prepared polyethylene glycol-modified liposomal FK506 (mean diameter: 109.5 ± 4.4 nm). We induced EAM by immunization with porcine myosin and assessed the tissue distribution of the nano-sized …

Advantages Of An Improved Rhesus Macaque Genome For Evolutionary Analyses, Julien S. Gradnigo, Abhishek Majumdar, Robert B. Norgren Jr., Etsuko N. Moriyama

School of Biological Sciences: Faculty Publications

The rhesus macaque (Macaca mulatta) is widely used in molecular evolutionary analyses, particularly to identify genes under adaptive or unique evolution in the human lineage. For such studies, it is necessary to align nucleotide sequences of homologous protein-coding genes among multiple species. The validity of these analyses is dependent on high quality genomic data. However, for most mammalian species (other than humans and mice), only draft genomes are available. There has been concern that some results obtained from evolutionary analyses using draft genomes may not be correct. The rhesus macaque provides a unique opportunity to determine whether an …

Is The Relationship Between Mast-Seeding And Weather In Oaks Related To Their Life-History Or Phylogeny?, Walter D. Koenig, Reyes Alejano, Maria Dolores Carbonero, Pilar Fernández-Rebollo, Johannes Knops, Teodoro Marañón, Carmen M. Padilla-Díaz, Ian S. Pearse, Ignacio M. Pérez-Ramos, Javier Vázquez-Piqué, Mario B. Pesendorfer

School of Biological Sciences: Faculty Publications

Although the functional basis of variable and synchronous seed production (masting behavior) has been extensively investigated, only recently has attention been focused on the proximate mechanisms driving this phenomenon. We analyzed the relationship between weather and acorn production in 15 species of oaks (genus Quercus) from three geographic regions on two continents, with the goals of determining the extent to which similar sets of weather factors affect masting behavior across species and to explore the ecological basis for the similarities detected. Lag-1 temporal autocorrelations were predominantly negative, supporting the hypothesis that stored resources play a role in masting behavior …

Experimental Microbial Evolution Of Extremophiles, Paul H. Blum, Deepak Rudrappa, Raghuveer Singh, Samuel Mccarthy, Benjamin J. Pavlik

School of Biological Sciences: Faculty Publications

Experimental microbial evolutions (EME) involves studying closely a microbial population after it has been through a large number of generations under controlled conditions (Kussell 2013). Adaptive laboratory evolution (ALE) selects for fitness under experimentally imposed conditions (Bennett and Hughes 2009; Dragosits and Mattanovich 2013). However, experimental evolution studies focusing on the contributions of genetic drift and natural mutation rates to evolution are conducted under non-selective conditions to avoid changes imposed by selection (Hindré et al. 2012).

To understand the application of experimental evolutionary methods to extremophiles it is essential to consider the recent growth in this field over the last …

A Stenotrophomonas Maltophilia Strain Evades A Major Caenorhabditis Elegans Defense Pathway, Corin V. White, Brian J. Darby, Robert J. Breeden, Robert J. Breeden, Michael A. Herman

School of Biological Sciences: Faculty Publications

Stenotrophomonas maltophilia is a ubiquitous bacterium and an emerging nosocomial pathogen. This bacterium is resistant to many antibiotics, associated with a number of infections, and a significant health risk, especially for immunocompromised patients. Given that Caenorhabditis elegans shares many conserved genetic pathways and pathway components with higher organisms, the study of its interaction with bacterial pathogens has biomedical implications. S. maltophilia has been isolated in association with nematodes from grassland soils, and it is likely that C. elegans encounters this bacterium in nature. We found that a local S. maltophilia isolate, JCMS, is more virulent than the other S. maltophilia …

The Influence Of Abiotic Factors On The Uptake And Elimination Of 3-Trifluoromethyl-4-Nitrophenol By Larval Sea Lamprey (Petromyzon Marinus), Benjamin Livingston Hlina

Theses and Dissertations (Comprehensive)

The backbone of sea lamprey (Petromyzon marinus) control in the Great Lakes is the use of the piscicide, 3-trifluoromethyl-4-nitrophenol (TFM), which is applied to streams containing larval sea lampreys. However, TFM effectiveness can be influenced by abiotic factors such as pH and temperature, which fluctuate daily and seasonally. The objectives of this thesis were to evaluate the influence of pH, temperature, and season on the toxicity, uptake, and elimination of TFM by larval sea lamprey. Radio-labeled TFM (¹⁴C-TFM) was used to determine how TFM uptake rates varied at different water pHs or temperatures during exposure to …

Mate Choice And Consequences For Consanguineous Mating In Drosophila Melanogaster, Emily S. Martin

Theses and Dissertations (Comprehensive)

The ability to discriminate between prospective mates is potentially important not only for the avoidance of unsuccessful or incompatible matings, but also for the selection of higher “quality” mates. Inbreeding, reproduction between closely related individuals, has long enjoyed the attention of biologists, and has classically been associated with fitness consequences that are primarily negative, termed “inbreeding depression”. Indeed, the costs of mating with a relative are well documented across a wide variety of species. If individuals are capable of kin recognition, it is expected that species should evolve to avoid consanguineous matings. However, a number of recent models suggest circumstances …

Sulfate-Reducing Bacteria Community Analysis: Isco/Isb Coupled Remediation, Christopher K. Bartlett

Theses and Dissertations (Comprehensive)

Improved techniques for remediating groundwater systems are required for the more than 500,000 contaminated sites in North America. Many of these sites are the legacy of historical industrial operations, inappropriate disposal practices and accidental releases. The most widely observed contaminant at many of these sites is petroleum hydrocarbons (PHCs). Recently, remediation efforts that involve the sequential application of treatment technologies have gained widespread interest. One specific sequential technology application or treatment train employs the aggressive nature of a chemical oxidation followed by bioremediation for polishing. When persulfate is used as the chemical oxidant its natural degradation by-product is sulfate, an …

The Sublethal Physiological Effects Of Exposure To Copper And Silver Mixtures On Rainbow Trout (Oncorhynchus Mykiss), Wesley Truong

Theses and Dissertations (Comprehensive)

The mechanisms behind metal-metal interactions in freshwater environments are currently not well understood. Freshwater environments consist of many different types of metals, from those naturally present such as copper (Cu) and those that originate from anthropogenic sources like silver (Ag). Both Cu and Ag use apical sodium (Na⁺) channels for uptake into the gills of freshwater fish. In the gills, the mechanisms of Cu²⁺ and Ag⁺ toxicity appear to be similar to one another, which is by inhibiting Na⁺ /potassium (K⁺)- adenosine triphosphatase (NKA) and carbonic anhydrase (CA). Inhibition of NKA and CA …

Changes In Brain Water Content In The Rainbow Trout (Oncorhynchus Mykiss) And In The Goldfish (Carassius Auratus) Due To High External Ammonia Exposure, Phillip Q.H. Pham-Ho

Theses and Dissertations (Comprehensive)

In fishes, hyperammonemia may occur following feeding or exposure to abnormally high concentrations of environmental ammonia due to sewage effluents, agricultural run-off and in crowded aquaculture pens. Increased internal ammonia can result in hyperactivity, convulsions, coma and death. In mammals, it is also associated with potentially fatal brain edema, in which the accumulation of intracellular water results in swelling, increased intracranical pressure and herniation leading to death. Recently it was shown that rainbow trout (Oncorhynchus mykiss) and goldfish (Carassius auratus) experience brain swelling following exposure to high external ammonia (HEA). However, the mechanism of ammonia-induced brain …

Metabolic Scaling Physiology And The Uptake, Elimination And Toxicity Of Tfm (3-Trifluoromethyl-4-Nitrophenol) To Invasive Sea Lampreys (Petromyzon Marinus), Laura R. Tessier

Theses and Dissertations (Comprehensive)

Sea lampreys (Petromyzon marinus) have a complex life cycle that involves a parasitic phase in which they feed on the blood and bodily fluids of large piscivorous fishes. Following the invasion of the Great Lakes by sea lampreys in the early 20^th century, sea lamprey parasitism contributed to major declines in the populations of commercial and sports fisheries in that basin. The lampricide 3-trifluoromethyl-4-nitrophenol (TFM), developed in the late 1950s,is now routinely applied to tributaries of the Great Lakes to control sea lamprey populations. This lampricide is selectively toxic to larval sea lampreys, which typically reside as …

Rnd3 As A Novel Target To Ameliorate Microvascular Leakage, Jerome W. Breslin, Dayle A. Daines, Travis M. Doggett, Kristine H. Kurtz, Flavia M. Souza-Smith, Xun E. Zhang, Mack H. Wu, Sarah Y. Yuan

Biological Sciences Faculty Publications

Background -Microvascular leakage of plasma proteins is a hallmark of inflammation that leads to tissue dysfunction. There are no current therapeutic strategies to reduce microvascular permeability. The purpose of this study was to identify the role of Rnd3, an atypical Rho family GTPase, in the control of endothelial barrier integrity. The potential therapeutic benefit of Rnd3 protein delivery to ameliorate microvascular leakage was also investigated.

Methods and Results-Using immunofluorescence microscopy, Rnd3 was observed primarily in cytoplasmic areas around the nuclei of human umbilical vein endothelial cells. Permeability to fluorescein isothiocyanate-albumin and transendothelial electrical resistance of human umbilical vein …

Draft Genome Sequences For Seven Streptococcus Parauberis Isolates From Wild Fish In The Chesapeake Bay, Ashley Haines, Emily Nebergall, Elvira Besong, Kimaya Council, Onaysha Lambert, David Gauthier

Biological Sciences Faculty Publications

Streptococcus parauberis is a pathogen of cattle and fish, closely related Streptococcus uberis and Streptococcus iniae. We report the genomes of seven S. parauberis strains recovered from striped bass (Morone saxatilis) in the Chesapeake Bay. The availability of these genomes will allow comparative genomic analysis of Chesapeake Bay S. parauberis strains versus S. parauberis cultured from other animal hosts and geographic regions.