Biology Commons^™

Three Simple Experiments To Examine The Effect Of Sediment Pollution On Algae-Based Food Webs In Streams, Patrick M. Edwards, Rodney Shroufe

Environmental Science and Management Faculty Publications and Presentations

Streams and stream macroinvertebrates are ideal natural systems for ecological inquiry. We present three simple experiments that students can use to conduct field-based investigations which illustrate the importance of algae-based food webs in streams and measure the effects of sediment pollution (scour and deposition) on stream ecological processes. Over the past 5 years, we have conducted these experiments 19 times with our students. We report on the results and reliability of these experiments and make suggestions for other educators who may want to conduct them.

Evolutionary Escalation: The Bat–Moth Arms Race, John M. Ratcliffe

Dartmouth Scholarship

Echolocation in bats and high-frequency hearing in their insect prey make bats and insects an ideal system for studying the sensory ecology and neuroethology of predator–prey interactions. Here, we review the evolutionary history of bats and eared insects, focusing on the insect order Lepidoptera, and consider the evidence for antipredator adaptations and predator counter-adaptations. Ears evolved in a remarkable number of body locations across insects, with the original selection pressure for ears differing between groups. Although cause and effect are difficult to determine, correlations between hearing and life history strategies in moths provide evidence for how these two variables influence …

Experimenting With Sex: Four Approaches To The Genetics Of Sex Reversal Before 1950, Michael Dietrich

Dartmouth Scholarship

In the early twentieth century, Tatsuo Aida in Japan, jvind Winge in Denmark, Richard Goldschmidt in Germany, and Calvin Bridges in the United States all developed different experimental systems to study the genetics of sex reversal. These locally specific experimental systems grounded these experimenters' understanding of sex reversal as well as their interpretation of claims regarding experimental results and theories. The comparison of four researchers and their experimental systems reveals how those different systems mediated their understanding of genetic phenomena, and influenced their interpretations of sex reversal.

Mechanisms Of Mrna Polyadenylation, Hizlan Hincal Ağuş, Ayşe Eli̇f Erson Bensan

Turkish Journal of Biology

mRNA 3'-end processing involves the addition of a poly(A) tail based on the recognition of the poly(A) signal and subsequent cleavage of the mRNA at the poly(A) site. Alternative polyadenylation (APA) is emerging as a novel mechanism of gene expression regulation in normal and in disease states. APA results from the recognition of less canonical proximal or distal poly(A) signals leading to changes in the 3' untranslated region (UTR) lengths and even in some cases changes in the coding sequence of the distal part of the transcript. Consequently, RNA-binding proteins and/or microRNAs may differentially bind to shorter or longer isoforms. …

Epigenetic Regulation Of Brca1 Expression And Its Role Inbreast Cancer Stem Cell Development, Elena Shestakova

Turkish Journal of Biology

The tumor suppressor breast cancer 1, early onset (BRCA1) plays an important role in maintaining the genome integrity, actively participating in DNA repair via homologous recombination. The level of functional final BRCA1 protein is precisely regulated in cells. Epigenetic regulation of BRCA1 gene expression is one of the most important mechanisms for BRCA1 level fine-tuning. In this review the main epigenetic mechanisms of BRCA1 expression regulation are presented, including DNA methylation, histone covalent modifications, and regulation with transcription factors. Another important function of BRCA1 emerging in recent years is its role in the regulation of breast cancer stem cell development. …

Myelin Disorders And Stem Cells: As Therapies And Models, Fatmagül İlayda Aydinli, Eşref Çeli̇k, Burcu Kurt Vatandaşlar, Bi̇lal Ersen Kerman

Turkish Journal of Biology

Myelin disorders burden millions of people around the world, yet existing therapies are inadequate to cure them. Current remedies commonly treat the symptoms with minimal to no effect on the actual cause of the disorder. The basis and/or the mechanism of demyelination is not known for many of the disorders either. In recent years, stem cells of variable origin have been used in clinical trials as transplant agents to restore the defective biochemical process or the damaged tissue. We summarize the outcomes of these trials for demyelination disorders. The capability of reprograming mature cells into stem cells equips researchers with …

Aqueous Reactive Species Induced By A Surface Air Discharge: Heterogenous Mass Transfer And Liquid Chemistry Pathways, D. X. Liu, Z. C. Liu, C. Chen, A. J. Yang, D. Li, M. Z. Rong, H. L. Chen, M. G. Kong

Bioelectrics Publications

Plasma-liquid interaction is a critical area of plasma science and a knowledge bottleneck for many promising applications. In this paper, the interaction between a surface air discharge and its downstream sample of deionized water is studied with a system-level computational model, which has previously reached good agreement with experimental results. Our computational results reveal that the plasma-induced aqueous species are mainly H+, nitrate, nitrite, H2O2 and O-3. In addition, various short-lived aqueous species are also induced, regardless whether they are generated in the gas phase first. The production/loss pathways for aqueous species are quantified for an air gap width ranging …

Understanding The Health In Healthcare: A Closer Look At Perspectives, Treatments, And Their Effectiveness, Carlo Chiana

Whittier Scholars Program

This project is interested in defining health as more than just Western medicine, it also encompasses the social implications that can have an impact on one’s health such as environment and psychological state. This study includes both Holistic Philosophy and philosophy of reductionism. This study includes descriptions of the philosophies and their methods, explains defensive medicine, comparing the models and their methods,

An Investigation Of Juvenile Alewife (Alosa Pseudoharengus) Habitat Use And Growth Using Natural Markers, Gregory Norman Labonte Ms

All Student Scholarship

This research attempts to connect patterns in growth and migration of an anadromous species. The goal of this research was to understand habitat movements and growth of juvenile alewives (Alosa pseudoharengus) in the Penobscot Estuary and Bay through the use of otolith microchemistry, otolith growth increments, and a laboratory stable isotope turnover study. Understanding the connection between growth and movement of juvenile alewives may lead to more accurate and sophisticated conservation and restoration methods for anadromous species.

Investigation Of Exoribonuclease-1 Function In Regulation Of Stem Cells During Planarian Regeneration, Steven Gobinsing Sayson

Browse all Theses and Dissertations

Precise regulation of gene expression is crucial for the maintenance of pluripotency and proper differentiation of stem cells. Due to their exceptional capacity for stem cell-driven regeneration, planarians are ideal models to dissect mechanisms regulating gene expression that secure stem cell function in vivo. While mechanisms of transcriptional regulation of gene expression in stem cells have been extensively investigated, less is known about regulation at the post-transcriptional level. Exoribonuclease-1 (XRN-1) is a conserved enzyme in eukaryotes that catalyzes 5' to 3' exonucleolytic degradation of RNA. XRN-1 is known to be required for proper regeneration of Dugesia japonica. Here, I …

Identification And Quantification Of Zooplankton In Ne Ohio Drinking Water Reservoirs, Michael Vigorito

Williams Honors College, Honors Research Projects

Cyanobacteria, or blue-green algae, are present in most freshwater ecosystems and are usually harmless. When these algae swell in numbers, they release harmful toxins that can be detrimental to animal and human health, and can destroy ecosystems. For this reason, many scientists and engineers have studied these harmful algal blooms in an attempt to predict, prevent, or control them to keep people and ecosystems safe. One of the variables in this investigation is the presence and quantity of zooplankton. These animals could play an important role in the prevalence of cyanobacteria, but more information is needed to determine what that …

Untargeted Metabolomic Profiling Of Rolipram-Stimulated Immune Cells, Sterling Shriber Ii

Williams Honors College, Honors Research Projects

Inflammation is a significant component of neurological diseases such as multiple sclerosis (MS). One potential anti-inflammatory agent, rolipram, was tested for efficacy in MS; however, despite showing promise in early trials, the drug has been largely sidelined due to side effects. However, it is still of interest to elucidate the anti-inflammatory mechanisms of rolipram in order to identify more targeted inhibitors of inflammatory signaling. In order to achieve this end, we have utilized liquid chromatography-mass spectrometry-based metabolomics to determine metabolic pathways that are altered by rolipram treatment in human THP-1 monocytic cells and primary mouse microglial cultures. Amino acids and …

The Development And Validation Of A One Tier Diagnostic Assessment To Test Premedical Students' Misconceptions About Traumatic Brain Injury, Md Hasan Iqbal

Browse all Theses and Dissertations

Since brain injury is common in the United States, it is important for health professionals and the public to have accurate knowledge about traumatic brain injury (TBI). Understanding misconceptions is important for health educators, nurses, and physicians, who work with TBI patients. While previous studies on misconceptions about TBI have been undertaken, these have not focused on pre-medical students, nor utilized validated assessments. The purpose of this study was to develop and validate a one tier diagnostic test with a confidence index to determine premedical students' misconceptions about TBI. Using the theoretical framework suggested by Treagust (1986, 1988, and 1995), …

Missing Gene Identification Using Functional Coherence Scores, Meghana Chitale, Ishita K. Khan, Daisuke Kihara

Department of Biological Sciences Faculty Publications

Reconstructing metabolic and signaling pathways is an effective way of interpreting a genome sequence. A challenge in a pathway reconstruction is that often genes in a pathway cannot be easily found, reflecting current imperfect information of the target organism. In this work, we developed a new method for finding missing genes, which integrates multiple features, including gene expression, phylogenetic profile, and function association scores. Particularly, for considering function association between candidate genes and neighboring proteins to the target missing gene in the network, we used Co-occurrence Association Score (CAS) and PubMed Association Score (PAS), which are designed for capturing functional …

Structural Basis For Recognition Of Human Enterovirus 71 By A Bivalent Broadly Neutralizing Monoclonal Antibody, Xiaohua Ye, Chen Fan, Zhiqiang Ku, Teng Zuo, Liangliang Kong, Chao Zhang, Jinping Shi, Qingwei Liu, Tan Chen, Yingyi Zhang, Wen Jiang, Linqi Zhang, Zhong Huang, Yao Cong

Department of Biological Sciences Faculty Publications

Enterovirus 71 (EV71) is the main pathogen responsible for hand, foot and mouth disease with severe neurological complications and even death in young children. We have recently identified a highly potent anti-EV71 neutralizing monoclonal antibody, termed D5. Here we investigated the structural basis for recognition of EV71 by the antibody D5. Four three-dimensional structures of EV71 particles in complex with IgG or Fab of D5 were reconstructed by cryo-electron microscopy (cryo-EM) single particle analysis all at subnanometer resolutions. The most critical EV71 mature virion-Fab structure was resolved to a resolution of 4.8 Å, which is rare in cryo-EM studies of …

Ecology Of Coyotes (Canis Latrans) In The Greater Detroit Area Of Southeastern Michigan, William B. Dodge

Wayne State University Dissertations

Coyote distribution and habitat use, diet and foraging behavior and space use patterns were investigated in the greater Detroit area of southeastern Michigan. We found evidence of coyotes on 24 of 30 (80%) suburban and 7 of 11 (64%) urban plots. Overall fifty-eight percent of coyote evidence was found within edge habitats, with den sites and tracks the only types of evidence found strictly in interior habitats. Land cover around evidence points included more wooded land cover than expected in suburban areas, suggesting the importance of tree cover for coyote occupancy, and more open space and wooded land cover than …

Genome Wide Analysis Identifies Sphingolipid Metabolism As A New Target Of Valproic Acid, Shyamalagauri Jadhav Jadhav

Wayne State University Dissertations

Bipolar disorder (BD), which is characterized by depression and mania, affects about 1% of the total world population. Current treatments are effective in only 40-60% of cases and cause severe side effects. Valproic acid (VPA), a branched short-chain fatty acid, is one of the most widely used drugs for the treatment of BD. Although many hypotheses have been postulated to explain the molecular mechanism of action of this drug in BD, the therapeutic mechanism is not understood. This knowledge gap has hampered the development of new drugs to treat this disorder. To identify candidate pathways affected by VPA, I performed …

A Novel Role For Repetitive Sequences In Recognition Of The Drosophila Melanogaster X Chromosome, Sonal Suresh Joshi

Wayne State University Dissertations

In humans and fruit flies, males have one X chromosome while females have two. This imbalance in gene dosage is potentially lethal, and the process of dosage compensation corrects it. The MSL (Male Specific Lethal) complex, which is composed of five proteins and one of two functionally redundant long non-coding roX (RNA on the X) RNAs, brings about dosage compensation in Drosophila melanogaster. In fruit fly dosage compensation, all the genes on the single male X chromosome are upregulated approximately twofold, via chromatin modifications, to equalize gene dosage with the two X chromosomes of females. This process calls for highly …

An Analysis Of The Interaction Between Sin3 And Methionine Metabolism In Drosophila, Mengying Liu

Wayne State University Dissertations

Chromatin modification and cellular metabolism are tightly connected. The mechanism for this cross-talk, however, remains incompletely understood. SIN3 controls histone acetylation through association with the histone deacetylase RPD3. In this study, my major goal is to explore the mechanism of how SIN3 regulates cellular metabolism.

Methionine metabolism generates the major methyl donor S-adenosylmethionine (SAM) for histone methylation. In collaboration with others, I report that reduced levels of some enzymes involved in methionine metabolism and histone demethylases lead to lethality, as well as wing development and cell proliferation defects in Drosophila melanogaster. Additionally, disruption of methionine metabolism can directly affect histone …

Unraveling The Molecular Mechanisms Of Aposematic Pigmentation In Oncopeltus Fasciatus, Jin Liu

Wayne State University Dissertations

Insects display the extraordinary amount of morphological variation, particularly in regard to their colorations. This diversity in coloration exists both in terms of the array of colors as well as the patterning of pigments. Previous studies have revealed that melanin, ommochrome, and pteridine are the most common pigments constituting insect color patterns. Among these three, the melanin pathway has been best studied so far and presents the foundation of the current understanding of insect coloration. At the same time, though, most of this insight relied on work performed in model systems such as Drosophila and Tribolium, which have significant limitations …

Imaging Anti-Proliferative Compounds With Flt-Pet, Christopher Mchugh

Wayne State University Dissertations

Imaging is critical in the detection and management of malignancies, and positron emission tomography (PET) is an imaging approach that provides information regarding cancer physiology through the tracking of molecular pathways and receptors. 3’-fluoro-3’-deoxythymidine (FLT) is a PET tracer designed to image cellular proliferation, which is a hallmark of cancer. FLT has been used to study the response of cancer to a variety of treatments such as chemotherapy, targeted agents, and radiation.

Here we explored FLT retention as a biomarker to monitor the anti-proliferative effect of the synthetic glucocorticoid (GC) dexamethasone (Dex) on non-small cell lung cancer (NSCLC). The basis …

Role Of Secretory Granule Heterogeneity In Calcium-Triggered Exocytosis, Tejeshwar Rao

Wayne State University Dissertations

The sympathetic nervous system is activated by a variety of threats to organismal homeostasis. The adrenomedullary chromaffin cell is the core effector of sympathetic activity in the peripheral nervous system. By design, the chromaffin cell secretory response is mutable so that release can be rapidly tuned to drive context-dependent changes in physiological function. However, the mechanisms by which this tuning is achieved with such high temporal fidelity and context specificity remain unclear. This represents a major gap in our understanding of the sympatho-adrenal system since it is known to modify the function of nearly every organ system in the body. …

Nemo No More? Spatial Demographic And Population Genetic Analyses Of The Two-Band Anemonefish, Amphiprion Bicinctus, In The Gulf Of Eilat, Red Sea, Jacob Seth Howell

Electronic Theses and Dissertations

Anemonefishes' obligatory mutualism with sea anemones dictates their occurrence on coral reefs. I examined spatial distribution, settlement, habitat usage, and survival patterns of the two-band anemonefish, Amphiprion bicinctus. In a 300 X 30 m study site off the coast of Israel in the Gulf of Eilat, fish and anemone populations were monitored for 13 censuses from October 1996 to August 1997. Based on size, anemonefish were categorized as adults, juveniles, or settlers. Settlers tended to cluster together but displayed significantly dispersed distributions in relation to adult individual fish and breeding pairs. Adult and juvenile anemonefish associated more with, and exhibited …

Stress, Sexual Signaling, And Alternative Mating Tactics In Male Green Treefrogs, Hyla Cinerea, Sarah Crocker-Buta

Electronic Theses and Dissertations

This thesis examines how the endocrine stress response mediates the expression of courtship signals and alternative mating tactics in male green treefrogs, Hyla cinerea. Males of this species produce acoustic signals that stimulate production of the stress hormone corticosterone (CORT) in vocal competitors, suggesting a role of CORT in intrasexual competition. I predicted that modulation of CORT level during intraspecific contests plays a pivotal role in regulating the expression of male courtship signals and behavior. Consistent with this prediction, CORT administration to calling males, simulating CORT production during male vocal contests, decreased attractiveness by compromising energetic investment in vocalization, increasing …

Preliminary Report: A Survey Of Aggressive Behaviors In The American Coot (Fulica Americana) At Ballona Wetlands, California, Victor D. Carmona-Galindo, Mariele Anne Courtois, Kiara Cerda

Biology Faculty Works

Understanding interspecific and intraspecific aggression is important for wildlife management and sustainability of populations. The objective of this study was to evaluate whether there is a difference in number of occurrences of interspecific aggression between American coots (Fulica americana) and mallard ducks (Anas platyrhynchos) and intraspecific aggression among American coots in the Ballona wetland habitat of Southern California. Trends in literature describe coots as highly aggressive toward other coots year-round and toward other bird species during the breeding season. Because we conducted observations outside the breeding season, we hypothesized that more instances of intraspecific aggression would …

Investigation Of The Natural Bacteriocin Nisin And Bioengineered Nisin Derivatives For The Prevention And Control Fo Staphylococcus Biofilms On Medical Device Materials, Leanne Kearney

Theses

Antimicrobial resistance has evolved into being one the major threats facing clinical environments worldwide. It has led to the deerease in effective prevention and treatment of pathogenic bacteria. One such bacterium is Staphylococcus epidermidis. Once considered a relatively harmless and commensal baeterium, it has recently evolved into being one the leading eauses of nosocomial infections. S. epidermidis has proven hamiful due to its ability to fonn detrimental biofilms. Biofilms are structured eonsortia of bacteria embedded in a self-produced polymer matrix that allows adherence to biotic or abiotic surfaces. These biofilms have played a leading role in healthcare-acquired infections with particular …

Design For Mosquito Abundance, Diversity, And Phenology Sampling Within The National Ecological Observatory Network, David Hoekman, Y. P. Springer, C. M. Barker, R. Barrera, M. S. Blackmore, W. E. Bradshaw, D. H. Foley, H. S. Ginsberg, M. H. Hayden, C. M. Holzapfel, Steven A. Juliano, L. D. Kramer, S. L. Ladeau, T. P. Livdahl, C. G. Moore, R. S. Nasci, W. K. Reisen, H. M. Savage

Faculty Publications – Biological Sciences

The National Ecological Observatory Network (NEON) intends to monitor mosquito populations across its broad geographical range of sites because of their prevalence in food webs, sensitivity to abiotic factors, and relevance for human health. We describe the design of mosquito population sampling in the context of NEON's long-term continental scale monitoring program, emphasizing the sampling design schedule, priorities, and collection methods. Freely available NEON data and associated field and laboratory samples, will increase our understanding of how mosquito abundance, demography, diversity, and phenology are responding to land use and climate change.

The Role Of Tryptophanase In Bacterial Survival In The Gastrointestinal Tract Of Drosophila Melanogaster, Coner Mckinney, Sarah Coker

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

Analyzing Urine In Mice With Tyrosinemia Type 1 Using Nmr Spectroscopy, Emily Olsen

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

Human Anatomy And Physiology Preparatory Course: Part 4 Of 4 (Interactive), Carlos Liachovitzky

Open Educational Resources

The overall purpose of these preparatory course set of learning objectives is to help students familiarize with some terms and some basic concepts they will find later in the Human Anatomy and Physiology I course.

These 40+ learning objectives to prepare for Human Anatomy and Physiology can be downloaded and played in a desktop, or laptop (windows exe file).

The entire course has four parts:

• Part 1
• Part 2
• Part 3
• Part 4

Each learning objective is followed by a set of multiple choice question similar to those found later in a Human Anatomy and Physiology course.