Biology Commons^™

Isolation And Characterization Of Lactobacillus Bulgaricus And Lactobacillus Casei From Various Foods, Özlem Turgay, Feryal Erbi̇li̇r

Turkish Journal of Biology

The aim of this study was to determine Lactobacillus bulgaricus and Lactobacillus casei isolated from yoghurt, different kinds of cheese and a traditional food named 'tarhana' (a fermented food made of a mixture of cereal, yoghurt and thyme), and to determine the antimicrobial activity and antibiotic resistance of these isolates. The identity of the culture was based on characteristics of the strains of Lactobacillus spp. as presented in Bergey's Manual of Determinative Bacteriology, carrying out microscopy (morphology), Gram straining, growth at 15 and 45 °C, and fermentation of different carbon sources and growth in 7.5% NaCl. On the basis of …

Modern Biological Approaches To Folk Medicines And Traditional Antifungal Therapies, Matthew G. Jessulat, Robert P. Smith, Nadereh H. Mir-Rashed, Golshani Ashkan, John Thor Arnason, Myron L. Smith

Biology Faculty Articles

No abstract provided.

Emotions And Actions Associated With Altruistic Helping And Punishment, Omar Tonsi Eldakar, David Sloan Wilson, Rick O'Gorman

Biology Faculty Articles

Evolutionary altruism (defined in terms of fitness effects) exists in the context of punishment in addition to helping. We examine the proximate psychological mechanisms that motivate altruistic helping and punishment, including the effects of genetic relatedness, potential for future interactions, and individual differences in propensity to help and punish. A cheater who is a genetic relative provokes a stronger emotional reaction than a cheater who is a stranger, but the behavioral response is modulated to avoid making the transgression public in the case of cheating relatives. Numerous behavioral differences are not accompanied by emotional differences, suggesting that other psychological mechanisms …

Cortisol Concentrations In Human Skeletal Muscle Tissue After Phonophoresis With 10% Hydrocortisone Gel, Amanda R. Kuntz, Christine Multer Griffiths, James M. Rankin, Charles W. Armstrong, Thomas J. Mcloughlin

Biology Faculty Articles

CONTEXT: The delivery of hydrocortisone through phonophoresis is a widely prescribed technique for the treatment of various musculoskeletal inflammatory conditions. However, limited scientific evidence exists to support the efficacy of phonophoresis in delivering hydrocortisone to skeletal muscle tissue in humans.

OBJECTIVE: To determine hydrocortisone (cortisol) concentrations in human skeletal muscle tissue after a phonophoresis treatment using 10% hydrocortisone gel.

DESIGN: Randomized design in which 12 subjects were randomly assigned to either an ultrasound (sham) treatment or a 10% hydrocortisone phonophoresis treatment.

SETTING: Laboratory.

PATIENTS OR OTHER PARTICIPANTS: Twelve healthy subjects (8 women, 4 men: age = 22.3 +/- 2.64 years, …

Development Of Proliferation Assays To Explore The Role Of Calcium Activated Potassium Channels In Cell Proliferation, Sean Foster

Honors Theses

Due to the large variety of K^† channel families implicated in cancer cell proliferation, it is desirable to develop techniques capable of quickly and reliably screening a variety of potential channels for a role in proliferation. While there are many established cell counting procedures, the time-consuming nature of such protocols limits their usefulness in broadly identifying particular channels in uncharacterized cell lines. For this reason, a primary goal of the present research was the development of techniques capable of implicating particular ion channels in proliferation with both qualitative and quantitative data. Once this goal was accomplished, the project sought …

Rockfish Resources Of The South Central California Coast: Analysis Of The Resource From Partyboat Data, 1980-2005, John Stephens, Dean Wendt, Debra Wilson-Vandenberg, Jay Carroll, Royden Nakamura, Erin Nakada, Steven Reinecke, Jono Wilson

Biological Sciences

Rockfishes (Sebastes spp.) have historically comprised a large proportion of catches in the nearshore recreational fishery in California, but declining populations of some species have led to increasingly restrictive management of the resource. This report summarizes new and existing data on rockfishes of the south central coast of California. In 2003, the California State Polytechnic University, San Luis Obispo placed observers on commercial passenger fishing vessels (partyboats) from the region. By the end of 2005, we had observed catches from 258 trips (8,839 fisher hours). We appended these data to partyboat catch statistics collected by the California Department of …

Characterizing The Resident, Fermentative Microbial Consortium In The Hindgut Of The Temperate-Zone Herbivorous Fish, Hermosilla Azurea (Teleostei: Kyphosidae), Pat M. Fidopiastis, Daniel J. Bezdek, Michael H. Horn, Judith S. Kandel

Biological Sciences

The zebraperch, Hermosilla azurea Jenkins and Evermann, a warm-temperate marine fish species with a strictly macroalgal diet, has a relatively long digestive tract with an enlarged hindgut and an associated blind caecum (HC). In zebraperch sampled off Santa Catalina Island, California (33°19′42′′N; 118°18′37′′W) in years 1995 through 2001, direct cell counts, gut epithelium assessment of bacterial attachment, and short-chain fatty acid (SCFA) analyses verified that the zebraperch HC possesses a dense and morphologically diverse, fermentative microbiota. Bacterial cell counts and morphological diversity were significantly higher in HC contents compared to anterior gut regions, suggesting that microbial populations were growing along …

Isolation And Characterization Of Toxin A-Negative, Toxin B-Positive Clostridium Difficile In Dublin, Ireland, Denise Drudy, N. Harnedy, S. Fanning, R. O’Mahony, L. Kyne

Articles

Clostridium difficile is a major cause of infectious diarrhoea in hospitalised patients. Most pathogenic C. difficile strains produce two toxins, A and B; however, clinically relevant toxin A-negative, toxin Bpositive (A– B+ ) strains of C. difficile that cause diarrhoea and colitis in humans have been isolated worldwide. The aims of this study were to isolate and characterise A– B+ strains from two university hospitals in Dublin, Ireland. Samples positive for C. difficile were identified daily by review of ELISA results and were cultured on selective media. Following culture, toxin-specific immunoassays, IMR-90 cytotoxicity assays and PCR were used to analyse …

A-State Biology Faculty To Publish Adventure Book, Aldemaro Romero Jr., Joy Trauth

Publications and Research

No abstract provided.

Emd: An Ensemble Algorithm For Discovering Regulatory Motifs In Dna Sequences, Jianjun Hu, Yifeng D. Yang, Daisuke Kihara

Department of Biological Sciences Faculty Publications

Background

Understanding gene regulatory networks has become one of the central research problems in bioinformatics. More than thirty algorithms have been proposed to identify DNA regulatory sites during the past thirty years. However, the prediction accuracy of these algorithms is still quite low. Ensemble algorithms have emerged as an effective strategy in bioinformatics for improving the prediction accuracy by exploiting the synergetic prediction capability of multiple algorithms.

Results

We proposed a novel clustering-based ensemble algorithm named EMD for de novo motif discovery by combining multiple predictions from multiple runs of one or more base component algorithms. The ensemble approach is …

Structure And Sequence Conservation Of A Putative Hypoxia Responsive Element In The Lactate Dehydrogenase-B Gene Of Fundulus, Bernard B. Rees, John A.L. Bowman, P M. Schulte

Biological Sciences Faculty Publications

No abstract provided.

Effects Of Long-Term Hypoxia On Enzymes Of Carbohydrate Metabolism In The Gulf Killifish, Fundulus Grandis, M L. Manning, C A. Landry, R D. Boehm, S Manning, A O. Cheek, Bernard B. Rees

Biological Sciences Faculty Publications

The goal of the current study was to generate a comprehensive, multi-tissue perspective of the effects of chronic hypoxic exposure on carbohydrate metabolism in the Gulf killifish Fundulus grandis. Fish were held at approximately 1.3·mg·l–1 dissolved oxygen (~3.6·kPa) for 4·weeks, after which maximal activities were measured for all glycolytic enzymes in four tissues (white skeletal muscle, liver, heart and brain), as well as for enzymes of glycogen metabolism (in muscle and liver) and gluconeogenesis (in liver). The specific activities of enzymes of glycolysis and glycogen metabolism were strongly suppressed by hypoxia in white skeletal muscle, which may reflect decreased energy …

A Feeling For The Micro-Organism: Structure On A Small Scale. Biofilms On Plant Roots, Nancy Fujishige

Biology Faculty Works

Biofilms are structured communities of bacterial cells enclosed in a self-produced polymeric matrix and adherent to an inert or living surface; they have clinical, industrial and environmental impacts. Biofilms that are established by bacteria on plants are found on the surfaces of roots, leaves, seeds and internal vascular tissues where the microbes live in commensal, mutualistic or parasitic/pathogenic associations with their host. The study of the structure of plant-associated biofilms has been considerably helped by the development of techniques using fluorescent markers coupled with confocal scanning laser microscopy as well as scanning electron microscopy. We review several of these techniques …

Physical And Health Assessment Of A Population Of Raccoon (Procyon Lotor) In Northeastern Florida, Eric C. Munscher

UNF Graduate Theses and Dissertations

The purpose of this research was to study the potential negative effects that mesopredators have on their environment and to promote control of mesopredator populations. Overabundant predatory species such as the raccoons (Procyon lotor) and Virginia opossums (Didelphis virginiana) can have significant pernicious effects on populations of autochthonous prey species, particularly when super predators such as the red wolf (Canis rufus) and Florida panther (Felis concolor coryii) are absent. These overabundant species, coined as mesopredators, are often responsible for extreme levels of predation on prey species and/or their young. The mesopredator release hypothesis involves the "release" or increased density of …

Suction Pressure Measurement And Behavioral Observations Of Sprawning-Run Sea Lampreys (Petromyzon Marinus), Robert Dallas Adams

Master's Theses and Doctoral Dissertations

Sea lampreys utilize attachment by suction throughout their life cycle. Despite the importance of this behavior, the role of surface texture in the attachment process has not been fully understood. The goal of this study was to develop a technique to quantitatively examine attachment abilities on surfaces of different texture and then to test whether the lampreys would seek out the surface that best promoted attachment. Results of the first experiment showed that the ability to attach depended on the interaction between a surface’s characteristics and the sea lamprey’s oral disk anatomy. For management applications where lamprey attachment is a …

Standard And Routine Metabolic Rates Of Juvenile Sandbar Sharks (Carcharhinus Plumbeus), Including The Effects Of Body Mass And Acute Temperature Change, W. Wesley Dowd, Richard W. Brill, Peter G. Bushnell, John A. Musick

Biology Faculty Works

Standard and routine metabolic rates (SMRs and RMRs, respectively) of juvenile sandbar sharks (Carcharhinus plumbeus) were measured over a range of body sizes (n=34) and temperatures normally associated with western Atlantic coastal nursery areas. The mean SMR Q10 (increase in metabolic rate with temperature) was 2.9 ±0.2. Heart rate decreased with increasing body mass but increased with temperature at a Q10 of 1.8−2.2. Self-paired measures of SMR and RMR were obtained for 15 individuals. Routine metabolic rate averaged 1.8 ±0.1 times the SMR and was not correlated with body mass. Assuming the maximum metabolic rate of sandbar sharks is 1.8−2.75 …

Estimating Consumption Rates Of Juvenile Sandbar Sharks (Carcharhinus Plumbeus) In Chesapeake Bay, Virginia, Using A Bioenergetics Model, W. Wesley Dowd, Richard W. Brill, Peter G. Bushnell, John A. Musick

Biology Faculty Works

Using a bioenergetics model, we estimated daily ration and seasonal prey consumption rates for six age classes of juvenile sandbar sharks (Carcharhinus plumbeus) in the lower Chesapeake Bay summer nursery area. The model, incorporating habitat and species-specific data on growth rates, metabolic rate, diet composition, water temperature (range 16.8−27.9°C), and population structure, predicted mean daily rations between 2.17 ±0.03 (age-0) and 1.30 ±0.02 (age-5) % body mass/day. These daily rations are higher than earlier predictions for sandbar sharks but are comparable to those for ecologically similar shark species. The total nursery population of sandbar sharks was predicted to consume ~124,000 …

Comparison Of Geometric Morphometric Outline Methods In The Discrimination Of Age-Related Differences In Feather Shape, Kristen M. Covino

Biology Faculty Works

Background: Geometric morphometric methods of capturing information about curves or outlines of organismal structures may be used in conjunction with canonical variates analysis (CVA) to assign specimens to groups or populations based on their shapes. This methodological paper examines approaches to optimizing the classification of specimens based on their outlines. This study examines the performance of four approaches to the mathematical representation of outlines and two different approaches to curve measurement as applied to a collection of feather outlines. A new approach to the dimension reduction necessary to carry out a CVA on this type of outline data with modest …

An Ethogram Developed On Captive Eastern Coyotes Canis Latrans, Eric Strauss

Biology Faculty Works

We studied capture Eastern Coyotes (Canis latrans) from 27-585 days of age and compiled an ethogram on them. A total of 72247 15-sec samples were taken, amounting to 301 h of field time varying between 59.4-61.3 h per Coyote. A total of 540 behavioral patterns was observed amongst the 16 behaviour categories ranging from 9 (miscellaneous) to 72 (explore/investigate) action patterns per parent category. The 16 parent categories that we believed best described and appropriately sorted the behavioural actions were resting, sitting, sitting1, sitting2, standing, traveling, explore/investigating, hunting, feeding, infantile, greeting, self play, play initiating, playing, agonistic, and miscellaneous. Exploring …

Rat Poison Kills A Pack Of Eastern Coyotes, Canis Latrans, In An Urban Area, Eric Strauss

Biology Faculty Works

We document the death of a pack of Eastern Coyotes (Canis latrans) from high levels of brodifacoum, a second generation poison that is the active ingredient in some forms of rat poison (e.g., d-Con®). The Coyotes died within a week of each other during late March/early April 2005. This incident indicates the vulnerability of wild animals to commercial over-the-counter rodenticides.

Coronary Heart Disease Risk Stratification In Full-Time Miami Valley Hospital Employees, Vicki K. Streng

Browse all Theses and Dissertations

Heart disease is the number one killer in the United States (American Heart Association, 2005). The purpose of this study was to demonstrate the results of a twelve-week exercise program on coronary heart disease risk factors in full-time hospital employees. Methods: The participants were given cardiovascular, weight training, and flexibility recommendations to follow during a twelve-week period. The main heart disease risk factors measured before and after the completion of the exercise program were blood pressure, total cholesterol, HDL-cholesterol, and body mass index. The information was put into the Framingham Heart Score to estimate the participants’ 10-year risk of developing …

Determining The Effect Of Substitutions At Alanine 47 In Synechococcus Pcc6301 Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco), Christopher R. Salyer

Browse all Theses and Dissertations

Mutant screening and genetic selection in various organisms have shown that residues far from the active site of ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO) can influence catalytic efficiency and CO2/O2 specificity. Because RubisCO catalyzes the rate-limiting step of photosynthesis, further study of these sites distant from the primary reaction center may provide the necessary information for engineering an increase in primary productivity of crop plants. In a previously described system of random mutagenesis and bioselection (Smith, 2002), the RubisCO genes from the cyanobacterium Synechococcus PCC6301, were randomly mutated and introduced into the photosynthetic bacterium Rhodobacter capsulatus. An A47T substitution resulted in a very …

Biomonitoring Organochlorine And Cholinesterase Inhibiting Insecticide In Eastern Iowa Streams, Matthew Thomas Fisher

Dissertations and Theses @ UNI

The four chapters in this thesis provide results from five separate investigations. Chapter One describes Isonychia bicolor acetylcholinesterase (AChE) activity in Northeast Iowa rivers. During 2002 and 2003 insects were collected from 10 sites during May, July and September, three sites on the Volga River were sampled weekly during May and June and one Cedar River site was sampled monthly. Also, in 2003, three sites on the Upper Iowa were sampled weekly in May and June. Sampling often sites yielded few discernable trends, however decreasing AChE activity from upstream to downstream sites was apparent on several occasions on the Volga …

Foraging Behavior And Success Of Herons And Egrets In Natural And Artificial Wetlands, Henry Dewayne Mincey

College of Graduate Studies: Theses & Dissertations

The southeastern United States has approximately 13.2 million hectares of wetland habitat, but these sensitive areas are subject to loss and degradation from draining and development. The effects, both positive and negative, that manipulation of these wetlands have on wildlife is still under study. In particular, there is a need to know whether artificial (mitigated) wetlands can serve as an appropriate substitute for the loss of natural wetlands. Therefore, I quantified the foraging behavior of herons and egrets (species that are dependent on wetlands for food) in natural and artificial wetlands in southeastern coastal Georgia and southern coastal South Carolina. …

The Winter Ecology Of The Piping Plover (Charadrius Melodus) In Coastal Georgia, Brandon Lennon Noel

College of Graduate Studies: Theses & Dissertations

Author's abstract: The Piping Plover (Charadrius melodus) is a federally listed species with three distinct breeding populations, including Great Plains (threatened), Great Lakes (endangered), and Atlantic Coast (threatened), all of which winter along the Atlnatic and Gulf coasts of the United States. I studied the winter ecology of the Piping Plovers on Little St. Simons Island (LSSI), Georgia, from 2003-2006, with emphasis on the conservation significance of this site for the endangered Great Lakes population. During 2003-2004 and 2004-2005, LSSI supported up to 100 Piping Plovers during peak migration, and approximately 40 birds wintered at this site. All populations had …

Molecular Population Genetics Of The Atlantic Sand Fiddler Crab, Uca Pugilator, Along The Atlantic Coast, David A. Weese

College of Graduate Studies: Theses & Dissertations

Author's abstract: The Atlantic sand fiddler crab, Uca pugilator, is an extremely abundant fiddler crab found along the eastern and Gulf coast of the United States. Fiddler crabs have a life cycle with an obligatory planktonic larval phase of 30-90 days, which might be expected to lead to widespread larval dispersal and consequent genetic homogeneity over considerable distances. However a large amount of morphological and behavioral variation is found between northern and southern populations along the eastern coast. This study was undertaken to determine the population genetic structure of U. pugilator and to determine whether these differences may have a …

Sexually Dimorphic Social Development And Female Intrasexual Chemical Signaling Of African Elephants (Loxodonta Africana), Jordana M. Meyer

College of Graduate Studies: Theses & Dissertations

Author's abstract: African elephants are a polygynous species in which males and females carry out dimorphic lifestyles. Males search and compete for reproductively active females, while females care for offspring and facilitate group cohesion. The objectives of this study was a) to compare the development of sexually dimorphic behaviors and developmental trends between young male and female wild African elephants and b) to determine the ability of captive female African elephants to discern between the follicular and luteal phase of conspecifics through trunk-tip contacts and the investigation of urine, and whether the reproductive phase of the receiver affected the response …

Effects Of Dosages And Application Periods Of Edta On Morphological And Cytogenetic Characters Of Barley (Hordeum Vulgare L.) Seedlings, Ali̇ İrfan İlbaş, Yasemi̇n Eroğlu, Hali̇l Erhan Eroğlu

Turkish Journal of Biology

Ethylenediaminetetraacetic acid (EDTA) has many applications in plant research in addition to other applications, such as chelation and medical therapy. The morphological and cytogenetic effects of EDTA on barley seedlings were investigated in the present study. Seeds of Hordeum vulgare L. were treated with different doses of EDTA (30, 60, 90, 120 and 150 mmol/l) and 2 different application periods (20 and 22 h). Except mitotic index, all of the measurements for the investigated characters were carried out on days 7 and 14. EDTA treatments affected germination rates in nearly all treatments. In general, EDTA treatments decreased the root, leaf …

Biological Activities Of The Essential Oil And Methanol Extract Of Achillea Biebersteinii Afan. (Asteraceae), Özlem Bariş, Medi̇ne Güllüce, Fi̇kretti̇n Şahi̇n, Hakan Özer, Hamdullah Kiliç, Hakan Özkan, Münevver Sökmen, Tüli̇n Özbek

Turkish Journal of Biology

The present work examined the in vitro antimicrobial and antioxidant activities of the essential oil and methanol extract from Achillea biebersteinii Afan. (Asteraceae). The essential oil exhibited antimicrobial activity against 8 bacteria, 14 fungi and the yeast C. albicans, whereas methanolic extract remained inactive. The antioxidative capacity of the samples was evaluated by using DPPH (2,2-diphenyl-1-picrylhydrazyl) and b-carotene/linoleic acid assays. In both assays, the extract showed better antioxidative capacity than the oil. The extract reduced the stable free radical DPPH with lower IC50 value (89.90 µg/ml) than the oil (8900 µg/ml). In the b-carotene/linoleic acid assay, the samples were not …

Some Optimal Cultural Parameters For Gibberellic Acid Biosynthesis By Pseudomonas Sp., Şafak Karakoç, Ni̇lüfer Aksöz

Turkish Journal of Biology

The current study reports the optimal cultural parameters for GA3 production by Pseudomonas sp. isolated from wastes of processed olive affected by physiological conditions (incubation temperature, pH of the growth media, incubation period, and incubation conditions). The highest level of gibberellic acid (285.06 mg/l) production was obtained in nutrient broth when the bacteria culture was incubated at 30 °C for 72 h at pH 7 on rotary shaker and in the dark.