Biology Commons^™

Understanding Sediment Biogeochemistry And The Role Of Juvenile Oysters On Recently Restored Eastern Oyster Reefs, Bryan Locher

Electronic Theses and Dissertations

In recent decades, goals for the restoration of eastern oyster (Crassostrea virginica) populations along the eastern coast of the United States have shifted from increasing harvestable oyster fisheries to enhancing the range of ecosystem services provided by oyster reefs. By filtering large volumes of water and releasing nutrient-rich feces and pseudofeces, oysters can locally enhance sediment biogeochemical cycling compared to that of unstructured benthic environments. An ongoing restoration program in Mosquito Lagoon, FL was leveraged to assess the immediate impacts ( < 1 year) of restoration on sediment biogeochemical properties of oyster reefs. The first study measured both short-term and long-term pools of carbon, nitrogen and phosphorus on dead, natural and restored reefs periodically over one year. The second study investigated one of the contributions to sediment nutrient pools by comparing feeding and feces/pseudofeces nutrient content of juvenile and older oysters. Results show that inorganic nitrogen and phosphorus pools can change within weeks after restoration and total nutrient pools by 6 months post-restoration. Restored reefs experienced a 136 % increase in ammonium, 78 % increase in total nitrogen, 46 % increase in total phosphorus, and 75 % increase in organic matter concentrations after 12 months of restoration. These nutrient increases were all positively correlated with oyster density, shell length and reef height measured on each reef. When standardized to grams of dry tissue weight, juvenile oysters showed significantly higher rates of chlorophyll-a removal, release of ammonium, and biodeposits with higher concentrations of dissolved organic carbon, nitrite + nitrate, and ammonium. The short-term changes to biogeochemical cycling on eastern oyster reefs within the first year of restoration are important to managers seeking to monitor ecosystem service recovery and overall coastal ecosystem health.

Exploring Multi-Scale Variation Of Fish Community Diversity In A Dynamic Coastal Estuary, Brittany Troast

Electronic Theses and Dissertations

Examining diversity over multiple spatial and temporal scales affords the opportunity to develop a mechanistic understanding of the factors influencing community diversity dynamics, and how these may shift in a changing world. This thesis first examines multi-decadal fish community diversity metrics across a coastal biogeographic transition zone to quantify changes in species assemblages, assess relationships between fish community diversity and the abiotic environment, and capture potential shifts in the location of a putative biogeographic break. Results of this chapter indicate not only a change in fish community composition, but also a shift in the location of the biogeographic transition zone. …

Variation In Prospecting Behavior And Drivers Of Post-Fire Habitat Preference Among Juvenile Florida Scrub-Jays, David Sherer

Electronic Theses and Dissertations

Florida Scrub-Jays (Aphelocoma coerulescens, FLSJ; federally Threatened) are cooperatively breeding birds endemic to Florida and dependent on fire-maintained xeric oak scrub. FLSJs are year-round residents, highly territorial, and rarely disperse far from their natal territory. Lifetime reproductive success is highest among individuals breeding in early-successional habitat, usually less than 9 to 10 years post-fire. However, because scrub burns infrequently such early-successional, high-quality habitat is extremely limited and competition for it as breeding space is likely intense. Because some birds live long enough to experience habitat succession, FLSJs also occupy later-successional overgrown scrub, even though both survival and fecundity decline. Although …

Ribbeting Results: Emergent Infectious Diseases In Wetland Systems, Ariel Horner

Electronic Theses and Dissertations

North American amphibians have recently been impacted by two major emerging pathogens, the fungus Batrachochytrium dendrobatidis (Bd) and iridoviruses in the genus Ranavirus (Rv). Environmental, seasonal and host factors may play important roles in disease dynamics, but few studies incorporate these components into their analyses. Here, we investigated the role of environmental, seasonal, genetic and location effects on driving Bd and Rv infection prevalence and severity in a biodiversity hot spot, the southeastern United States. We used quantitative PCR to characterize Bd and Rv dynamics in natural populations of three amphibian species: Notophthalmus perstriatus, Hyla squirella and Pseudacris ornata and …

The Ecology Of Central Florida's Thief Ants (Hymenoptera: Formicidae: Solenopsis), Leo Ohyama

Electronic Theses and Dissertations

Thief ants of the genus Solenopsis are a diverse group of ants that are found in ant communities throughout the world. They have long been purported to practice lestobiosis, an interaction between small and larger-bodied ants, where small ants cryptically tunnel into larger-bodied ant nests within the subterranean environment and steal brood or eggs for consumption. Thief ants are extremely small, measuring 1-2 mm in length and many of the species within this group practice a subterranean life history, where they live the entirety of their lives exclusively belowground. Due to these key characteristics, the ecology and natural history of …

Business In The Estuary, Party In The Sea: Migration Patterns Of Striped Mullet (Mugil Cephalus) Within The Indian River Lagoon Complex, Olivia Myers

Electronic Theses and Dissertations

Commercial and recreational environmental enterprises in the Indian River Lagoon (IRL), Florida supply nearly 10,000 jobs and produce $1.6 billion dollars a year in revenue. These waters contain iconic species of sportfish, including red drum, snook, and sea trout, as well as their lower trophic level prey such as snapper and mullet. Striped mullet (Mugil cephalus) are both commercially valuable as well as an indicator species for overall ecosystem health. From September to December, mullet in the IRL undergo an annual migration from their inshore foraging habitats to oceanic spawning sites. However, their actual migratory pathways remain unknown. To address …

Hydrodynamic Limitations And The Effects Of Living Shoreline Stabilization On Mangrove Recruitment Along Florida Coastlines, Christian Pilato

Electronic Theses and Dissertations

The recruitment success of mangroves is influenced by a variety of factors, including propagule availability, desiccation, herbivory, and hydraulic habitat limitations. Hydrodynamic forces (waves and currents) act as obstacles to mangrove recruitment, restricting the successful colonization of mangrove species. We evaluated the biological and physical limitations to mangrove recruitment through monthly shoreline surveys and lateral pull-tests. Surveys followed mangroves from propagule release through recruitment along the shorelines of De Soto National Memorial (Bradenton, FL), capturing differences in propagule availability and recruitment along natural areas and across differing forms of shoreline stabilization ("living shorelines" and revetments). Propagule densities were highest along …

Fear And Loathing In The Super Organism: Foraging Strategy Doesn't Change Forager Response In A Landscape Of Fear., Philip Schadegg

Electronic Theses and Dissertations

Understanding how predators impact keystone species, like ants, is very important for our understanding of ecology because of ants' importance in shaping community dynamics and ecosystem functions. In this thesis I present research investigating the role of the ant-specialized spider Anasaitis canosa in influencing the foraging behavior of four ant species (Formica pallidefulva, Odontomachus ruginodis, Pheidole obscurithorax & Solenopsis invicta). Collectively, these four species use foraging strategies exhibited by most ants. I conducted two experiments to quantify the impacts of spider predation on ant prey. The first used forty colonies of four ant species to investigate how A. canosa changed …

Assessing The Effects Of Habitat And Manatee Exclusion Devices On Red Drum (Sciaenops Ocellatus) Movement Patterns In Estuarine Impoundments, Steven Baker

Electronic Theses and Dissertations

The Integrate-Transfer-Launch (ITL) complex impoundments located within the Kennedy Space Center security zone are known spawning sites for red drum (Sciaenops ocellatus). However, recent construction of manatee exclusion bollards around culverts leading into these impoundments may impede movement to and from this critical habitat. The goals of this study were to: 1) utilize passive acoustic telemetry to document patterns of red drum movement and habitat use within and around the ITL impoundments to assess how manatee exclusion bollards and environmental conditions may impact movement of red drum; and 2) explore red drum movement in response to environmental disturbance, specifically a …

Living Shoreline Stabilization To Increase Resiliency At De Soto National Memorial, Linda Walters, Melinda Donnelly, Christian Pilato, Suzanne Connor

CEELAB Research Data

De Soto National Memorial (Bradenton, FL) is an important location where both Native Americans and De Soto's army of soldiers once lived. We have been working closely with the National Park Service and the University of Central Florida to understand how to best stabilize this shoreline using living shoreline techniques combined with long-term natural recruitment. Stabilizing De Soto's shoreline is essential to decrease erosion and shoreline loss to protect the Park's cultural and natural resources, especially the numerous historically significant shell middens. Through pre-restoration monitoring, we determined that high-energy boat wakes were limiting natural mangrove recruitment. Lack of retention of …

Shoreline Characterization In The Northern Indian River Lagoon, Melinda Donnelly, Michelle Shaffer, Suzanne Connor, Linda Walters

CEELAB Research Data

The purpose of this project was to evaluate current conditions of estuarine shorelines in the northern section of the Indian River Lagoon system, including Mosquito Lagoon, north Indian River, and Banana River. From January 2016 through June 2018, we evaluated structural and functional characteristics of 374 miles of shoreline, from Ponce Inlet in Volusia County to Sebastian Inlet in Brevard County (11,000+ data points). Hard-armoring accounted for approximately 50% of total shoreline, evenly divided between shoreline with bulkheads (25%) and hardened slopes (25%). Forty-five percent of shoreline without hard-armoring had anthropogenic alterations (i.e. mosquito impoundments, railroads and roadways, residential and …

A Cohort-Based Program To Help Students Prepare A Conference Research Presentation, Alanna Lecher

Florida Statewide Symposium: Best Practices in Undergraduate Research

Students move through many first time experiences when navigating their undergraduate and graduate education. Such experiences include the first time students submit an article to a peer-reviewed scientific journal, attend a conference, and conduct fieldwork. The cohort model has been shown to be effective in increasing success in undergraduate education, and it can be adapted to helping students succeed in these novel experiences as well. This presentation will explore one program where the cohort model was implemented to aid undergraduate students preparing their first conference presentation on a scientific research project. Program structure and implementation will be described.

Unearthing The Past And Present Of A Semi-Fossorial Lizard: Conservation Genetics, Phylogeography, And Taxonomy Of Plestiodon Egregius., Kathryn Mercier

Electronic Theses and Dissertations

Characterizing an organism's evolutionary history and population structure as well as understanding the forces shaping that divergence is crucial to conservation biology. A clear understanding of the patterns of diversity and divergence are imperative for the best management of the organism, while an awareness of what drives these patterns can lead to better predictions of how organisms will respond to future climate change. Historical climate changes and associated sea level change are among the main forces driving divergence in many species. To examine how effects of climate changes may have driven patterns of intraspecific divergence, I examined Mole Skinks, Plestiodon …

Infection Dynamics Of Herpesvirus In Gopher Tortoises, Joanne Saldanha

Honors Undergraduate Theses

Gopherus polyphemus, commonly known as the Gopher Tortoise, is a dryland reptile native to the southeastern United States. It is commonly a resident of longleaf pine and dry oak sand hill habitats. It is considered a keystone species because they dig deep burrows that provide shelter to them as well as many other animals. Habitat loss, fragmentation, and disease are major threats and have caused this species to be federally listed as a threatened species under the Endangered Species Act (ESA). Disease is a major threat to the gopher tortoise’s survival, and with declining populations, the need to investigate …

Mechanical Properties Of The Skeleton Of Acropora Cervicornis, Bridget Masa

Honors Undergraduate Theses

This research explores the instantaneous mechanical behavior of the skeleton of the critically endangered staghorn coral Acropora cervicornis. Both bleached and sanded skeletons were used in this experiment. The Raman spectroscopy test showed that there was no significant change in the Raman shift between the three branches tested. The shifts were nearly identical to Raman shifts of calcium carbonate. Vickers hardness test found that 1 Bleached had the average hardness of 3.44 GPa with a standard deviation of 0.12 GPa. The sanded sample also had a similar value of 3.54 GPa with a standard deviation of 0.13 GPa. Samples from …

Shoreline Characterization For Northern Indian River Lagoon And Mosquito Lagoon, Melinda J. Donnelly, Linda Walters, Michelle Shaffer

CEELAB Research Data

The purpose of this project was to evaluate the current conditions of estuarine shorelines in Mosquito Lagoon and northern Indian River. The shoreline assessment is the first phase in the development of a shoreline restoration suitability model for the northernmost section of the Indian River Lagoon system, in order to better conserve and restore shorelines and promote sustainable use of natural resources. The shoreline survey methodology was developed by St. Johns River Water Management for northeastern Florida and was adapted for applications in Brevard and Volusia Counties. Between November 2017 through June 2018, shoreline evaluations were completed at transects located …

Characterizing Biogeochemical Shifts In Two Salix Caroliniana Michx. Encroached Freshwater Subtropical Marshes, Janet Ho

Electronic Theses and Dissertations

Shrub encroachment is a common disturbance in wetlands, but little is known about how shrub encroachment impacts functions such as carbon (C) storage and nitrogen (N) cycling. The objective of this thesis was to identify differences in physiochemical properties (within soil, water and leaf tissue) and biogeochemical processes (soil respiration, enzyme activity, litter decomposition, and N cycling) in two subtropical freshwater marshes encroached by coastal plain willow (Salix caroliniana Michx.). Two study regions (Moccasin Island and Lake Apopka) were selected because of their location in the St. John's River watershed and their unique histories and hydroperiod, allowing for an investigation …

Split Deoxyribozyme Probe For Efficient Detection Of Highly Structured Rna Targets, Sheila Raquel Solarez

Honors Undergraduate Theses

Transfer RNAs (tRNAs) are known for their role as adaptors during translation of the genetic information and as regulators for gene expression; uncharged tRNAs regulate global gene expression in response to changes in amino acid pools in the cell. Aminoacylated tRNAs play a role in non-ribosomal peptide bond formation, post-translational protein labeling, modification of phospholipids in the cell membrane, and antibiotic biosynthesis. ^[1] tRNAs have a highly stable structure that can present a challenge for their detection using conventional techniques. ^[2] To enable signal amplification and lower detection limits, a split probe - split deoxyribozyme (sDz or BiDz) probe, which …

Oyster Reef Restoration: Impacts On Infaunal Communities In A Shallow Water Estuary, Katherine P. Harris

Honors Undergraduate Theses

Oyster reefs are important estuarine ecosystems that provide habitat to many species including threatened and endangered wading birds and commercially important fishes and crabs. Infaunal organisms (i.e. small, aquatic animals that burrow in the sediment) are also supported by oyster reef habitats. Infaunal organisms are critical to marine food webs and are consumed by many important species that inhabit coastal estuaries. However, over the past century 85% of shellfish reef habitats have been lost, making restoration of these areas vital. Due to their important role in coastal food webs, infauna is hypothesized to be a strong indicator of habitat productivity …

The Evolution Of Peristenus (Hymenoptera: Braconidae): Taxonomy, Phylogenetics And Ecological Speciation, Yuanmeng Zhang

Electronic Theses and Dissertations

Parasitoid wasps are ecologically and economically important as biological control agents. However, little is known about the diversity, distribution and biology of most hymenopteran parasitoids due to their small size, morphological conservatism, and complex life styles. The focus of my PhD research was to investigate the evolution and speciation of euphorine braconid wasps, using a combination of multilocus phylogenetics and population genomic techniques combined with traditional taxonomy. The three data chapters of my dissertation are divided into different taxonomic ranks of euphorine braconids, focusing on genera, species, and populations. For chapter 2, I built a multilocus phylogeny of the tribe …

Evolution And Distribution Of Phenotypic Diversity In The Venom Of Mojave Rattlesnakes (Crotalus Scutulatus), Jason Strickland

Electronic Theses and Dissertations

Intraspecific phenotype diversity allows for local adaption and the ability for species to respond to changing environmental conditions, enhancing survivability. Phenotypic variation could be stochastic, genetically based, and/or the result of different environmental conditions. Mojave Rattlesnakes, Crotalus scutulatus, are known to have high intraspecific venom variation, but the geographic extent of the variation and factors influencing venom evolution are poorly understood. Three primary venom types have been described in this species based on the presence (Type A) or absence (Type B) of a neurotoxic phospholipase A2 called Mojave toxin and an inverse relationship with the presence of snake venom metalloproteinases …

Behavioral And Disease Ecology Of Gopher Tortoises (Gopherus Polyphemus) Post Exclusion And Relocation With A Novel Approach To Homing Determination, Johnathan Napier

Electronic Theses and Dissertations

In the wake of human expansion, relocations and the loss of habitat can be stressful to an organism, plausibly leading to population declines. The gopher tortoise (Gopherus polyphemus) is a keystone species that constructs burrows it shares with 362 commensal species. Frequent exclusions and relocations and long generation times have contributed to G. polyphemus being State-designated as Threatened in Florida. Prior studies have indicated that G. polyphemus may possess homing behavior and thus be able to counteract stressors due to relocation and exclusion. I radiotracked a cohort of G. polyphemus for 11 months following excavation, relocation, and exclusion due to …

An Examination Of Beta Diversity Indices And Their Predictors In Two Large-Scale Systems, Philip Schroeder

Electronic Theses and Dissertations

Biodiversity is what conservation biology was developed to conserve. It is the physical manifestation of life as a concept and, be it for practical or idealistic reasons, all conservationists seek to protect or, in some cases, enhance it. Because of its monolithic importance to the field, much effort has been expended trying to better measure and understand it. Recently, greater attention has been paid to the partition of diversity; the observation that the total diversity of a system (γ) can be broken down into within-site diversity (α) and between-site diversity (β). In particular, it has been noticed that the β …

The Subject Librarian Newsletter, Biology, Spring 2017, Sandy Avila

Libraries' Newsletters

No abstract provided.

The Effect Of Parental Population Density On Offspring Immune Function, Dana Davis

Electronic Theses and Dissertations

It is well known that an individual's environment, genetic code, and gene by environment interactions have an effect on its overall phenotype. However, there is a growing body of work that shows that parents can have an effect on their offspring's phenotype beyond the inherited genetic code. Studies have shown that parents may affect their offspring through physiological mechanisms such as egg provisioning and epigenetic effects and through behavioral mechanisms such as maternal care. In many of these cases, the parental effect is triggered by an environmental cue. Previous work has shown that density can impact immune function and cuticle …

Mucking About: Hydrologic Regime And Soil Carbon Storage In Restored Subtropical Wetlands, Alicia Huber

Electronic Theses and Dissertations

Wetlands are extremely important ecosystems that have declined drastically worldwide, continue to be lost, and are threatened globally. They perform a number of important ecosystem services such as flood control, provide habitat for many species, and have aesthetic and recreational value. Wetlands are also important to the global carbon (C) cycle. Wetland soils are especially effective C sinks because they have high primary productivity and low decomposition rates due to flooded, anoxic conditions. Increased recognition of wetlands' value has led to more ecological and hydrological restoration of degraded wetlands to mitigate the effects of wetland destruction. Hydrological restoration, which attempts …

Plasticity Of Central And Peripheral Nervous System: Effects Of Oxygen-Glucose Deprivation (Ogd) And Chronic Intermittent Hypoxia (Cih), Jin Chen

Electronic Theses and Dissertations

Transient receptor potential canonical 6 (TRPC6) channels are permeable to Na+ and Ca2+ and are widely expressed in the brain. In this study, we investigated the role of TRPC6 following ischemia/reperfusion (I/R) and oxygen-glucose deprivation (OGD). We found that TRPC6 expression was increased in wild type (WT) mice cortical neurons following I/R and in primary neurons with OGD, and that deletion of TRPC6 reduced the I/R-induced brain infarct in mice and the OGD- /neurotoxin-induced neuronal death. Using live-cell imaging to examine intracellular Ca2+ levels ([Ca2+]i), we found that OGD induced a significant higher increase in glutamate-evoked Ca2+ influx compared to …

An Rnai Screen To Identify Components Of A Polyamine Transport System, Adam J. Foley

Honors Undergraduate Theses

Polyamines, specifically putrescine, spermidine, and spermine, are small cationic molecules found in all organisms. Cells can biosynthetically make these molecules, or alternatively, they can be transported from the extracellular environment. Malignant cells have been shown to require relatively high amounts of polyamines. There is a chemotherapeutic agent, DFMO, used to block the biosynthesis of polyamines. Many malignant cells can circumvent DFMO therapy by activating their transport system. A potential solution is to simultaneously block biosynthesis and transport of polyamines. However, little is known about the polyamine transport system in higher eukaryotes.

This thesis aims to add to the basic biological …

The Role Of The Y-Chromosome In The Evolution Of Autosomally Coded Traits, Ian Kutch

Electronic Theses and Dissertations

Recent work indicates that the Y-chromosome of the fruit fly Drosophila melanogaster can influence gene regulation on the autosomes and X chromosome. This newly discovered function of the Y has the potential to dramatically shape the regulatory evolution of numerous genes that reside throughout the genome; even for genes that code for both male and female traits. Given that the mechanism underlying the Y-linked influence on gene expression in D. melanogaster appears to exist in other independently evolved heterogametic sex chromosomes, the evolutionary implications of Y-linked regulatory variation (YRV) deserves to be explored. These implications include the potential for Y-chromosomes …

A Major Dna Double Strand Repair Pathway And Cancer-Associated Circulating Proteins Are Effecters Of Epigenetic Revision., Brittany Allen

Electronic Theses and Dissertations

DNA methylation is a vital epigenetic process that acts as a major control mechanism for gene expression. In addition to its essential role in many normal cellular processes, it is also implicated in a wide variety of disease states and processes including cancer. Along with genetic mutations, aberrant DNA methylation patterns, specifically the inappropriate DNA methylation or demethylation of CpG residues, may activate oncogenes or suppress tumor suppressor genes, respectively. These changes can generate or facilitate the progression of tumorigenesis and tend to accumulate throughout the development of cancer. Although they play such a major role in cancer and in …