Biology Commons^™

Nona-Arginine Facilitates Delivery Of Quantum Dots Into Cells Via Multiple Pathways, Yi Xu, Betty Revon Liu, Han Jung Lee, Katie Shannon, Jeffrey G. Winiarz, Tien-Chun Wang, Huey-Jenn Chiang, Yue-Wern Huang

Biological Sciences Faculty Research & Creative Works

Semiconductor quantum dots (QDs) have recently been used to deliver and monitor biomolecules, such as drugs and proteins. However, QDs alone have a low efficiency of transport across the plasma membrane. In order to increase the efficiency, we used synthetic nona-arginine (SR9), a cell-penetrating peptide, to facilitate uptake. We found that SR9 increased the cellular uptake of QDs in a noncovalent binding manner between QDs and SR9. Further, we investigated mechanisms of QD/SR9 cellular internalization. Low temperature and metabolic inhibitors markedly inhibited the uptake of QD/SR9, indicating that internalization is an energy-dependent process. Results from both the pathway inhibitors and …

Mutation Size Optimizes Speciation In An Evolutionary Model, Nathan Dees, Sonya Bahar

Physics Faculty Works

The role of mutation rate in optimizing key features of evolutionary dynamics has recently been investigated in various computational models. Here, we address the related question of how maximum mutation size affects the formation of species in a simple computational evolutionary model. We find that the number of species is maximized for intermediate values of a mutation size parameter μ; the result is observed for evolving organisms on a randomly changing landscape as well as in a version of the model where negative feedback exists between the local population size and the fitness provided by the landscape. The same result …

Kinematic Evidence For Superfast Locomotory Muscle In Two Species Of Teneriffiid Mites, Grace C. Wu, Jonathan C. Wright, Dwight L. Whitaker, Anna N. Ahn

All HMC Faculty Publications and Research

Locomotory muscles typically operate over a narrow range of contraction frequencies, characterized by the predominant fiber types and functional roles. The highest documented frequencies in the synchronous sound-producing muscles of insects (550 Hz) and toadfish (200 Hz) far exceed the contraction frequencies observed in weight-bearing locomotory muscles, which have maximum documented frequencies below 15-30 Hz. Laws of scaling, however, predict that smaller arthropods may employ stride frequencies exceeding this range. In this study we measured running speed and stride frequency in two undescribed species of teneriffiid mites from the coastal sage scrub of southern California. Relative speeds of both species …

Algal Biomass Accrual In Relation To Nutrient Availability Along A Longitudinal Gradient In The Upper Green River, Kentucky, Mary Douglas Penick

Masters Theses & Specialist Projects

Nutrient limitation in aquatic ecosystems results from a deficiency in nitrogen or phosphorus levels relative to cellular growth needs. Nutrient limitation of freshwater systems is a function of biotic and abiotic factors. Biotic factors include vascular and nonvascular plant community composition. Abiotic factors include underlying bedrock and land-use activities (e.g. agriculture, septic systems). Nutrient availability directly affects growth, productivity, and community structure of primary producers. The purpose of this study was two-fold: (1) to assess the relationship between ambient algal biomass. and in-stream nutrient levels along the longitudinal course of a river through a transition from weak to well-developed underlying …

Mojave Applied Ecology Notes Summer 2010, Scott R. Abella, E. Cayenne Engel

Mojave Applied Ecology Notes

Survey of monitoring and management for conservation of rare plants, Roadside restoration techniques in Joshua Tree NP, and an update on renewable energy developments in the Southwestern deserts

Increased Abundance And First Breeding Record Of The Neotropic Cormorant (Phalacrocorax Brasilianus) On The Alluvial Plain Of Mississippi, Katie C. Hanson, Travis L. Devault, Stephen J. Dinsmore

United States Department of Agriculture Wildlife Services: Staff Publications

Phalacrocorax brasilianus (Neotropic Cormorant) has been observed with increasing frequency in the alluvial plain (Delta region) of Mississippi. In the past 6 years, 22 individuals have been observed in 20 separate sightings during spring and summer. These sightings have occurred at breeding colonies of other colonial waterbirds and commercial aquaculture facilities of Ictalurus punctatus (Channel Catfish). Two sexually mature Neotropic Cormorants have been collected at a colonial waterbird breeding colony near the Mississippi River in the western Delta region among flocks of Phalacrocorax auritus (Double-crested Cormorants). Twice during the summer of 2008, confirmed nesting of Neotropic Cormorants were documented in …

Tooth Chipping Can Reveal The Diet And Bite Forces Of Fossil Hominins, Paul J. Constantino, James Jin-Wu Lee, Herzl Chai, Bernhard Zipfel, Charles Ziscovici, Brian R. Lawn, Peter W. Lucas

Biological Sciences Faculty Research

Mammalian tooth enamel is often chipped, providing clear evidence for localized contacts with large hard food objects. Here, we apply a simple fracture equation to estimate peak bite forces directly from chip size. Many fossil hominins exhibit antemortem chips on their posterior teeth, indicating their use of high bite forces. The inference that these species must have consumed large hard foods such as seeds is supported by the occurrence of similar chips among known modern-day seed predators such as orangutans and peccaries. The existence of tooth chip signatures also provides a way of identifying the consumption of rarely eaten foods …

Future Management Of The Metropolitan Recreational Roe's Abalone Fishery., Metropolitan Roe's Abalone Recreational Fishery Working Group.

Fisheries Management Papers

Following the setting of a 40 tonne Total Allowable Recreational Catch (TARC) for the Perth recreational abalone fishery, a working group was formed to examine future management options.

The Metropolitan Roe’s Abalone Recreational Fishery Working Group (“the Working Group”) examined historical management, key principles, amenity of fishing, bag limits, license numbers, season length and timing of the season to assist its deliberations. A questionnaire was also sent out to 1,000 abalone recreational licence holders, with 20 per cent of licensees providing a detailed response.

Recent Advances In The Climate Change Biology Literature: Describing The Whole Elephant, A. Townsend Peterson, Shaily Menon, Xingong Li

Peer Reviewed Publications

Climate change biology is seeing a wave of new contributions, which are reviewed herein. Contributions treat shifts in phenology and distribution, and both document past and forecast future effects. However, many of the current wave of contributions are observational and correlational, and few are experimental in nature, and too often a conceptual framework in which to contextualize the results is lacking. An additional gap is the lack of effective cross-linking among areas of research, for example, connection of sea-level rise and climate change implications for distributions of species, or evolutionary adaptation studies with distributional shift studies. Although numerous important contributions …

Evaluating Captive-Breeding Techniques And Reintroduction Success Of The California Condor (Gymnogyps Californianus), Amy C. Utt

Loma Linda University Electronic Theses, Dissertations & Projects

In this dissertation, I present two original research studies on the behavior and survival of the critically endangered California Condor (Gymnogyps californianus). I also provide a comprehensive review of the role of captive-rearing to the conservation of birds.

The first study examined the behavioral differences of puppet- and parent-reared condor juveniles reared in captivity. This study further defined and examined the behaviors of adult conspecific mentors and their interactions with juveniles. Dominance hierarchy analyses for two cohorts of juveniles and their adult mentors indicated the establishment of a linear hierarchy. Although puppet-reared juveniles engaged in fewer social behaviors in …

A Sea Change For Aquatic Sustainability : Meeting The Challenge Of Fish Resources Management And Aquatic Sustainability In The 21st Century, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Production And In Vitro Investigation Of Vitamin B12-Based Bioprobes, Amy Rabideau

Renée Crown University Honors Thesis Projects - All

Vitamin B₁₂ (B₁₂)-based bioprobes were produced and investigated in vitro for studying the B₁₂ uptake pathway in certain cancer cell lines and their target-specific capabilities as imaging and/or contrast agents in vivo. An intrinsic factor (IF)-bound B₁₂ conjugate (B₁₂-ReBQBA) was produced containing rhenium(I) for in vitro analysis of the cubilin-expressing placental choriocarcinoma cell line. B₁₂-ReBQBA has millimolar toxicity in vitro and excitation and emission wavelengths in the visible region, 488 nm and 560 nm, respectively. The rhenium metal in this bioprobe can be readily exchanged for the metastable radioactive metal technetium-99m …

Partitioning Of Minimotifs Based On Function With Improved Prediction Accuracy, Sanguthevar Rajasekaran, Tian Mi, Jerlin Camilus Merlin, Aaron Oommen, Patrick R. Gradie, Martin R. Schiller

Life Sciences Faculty Research

Background

Minimotifs are short contiguous peptide sequences in proteins that are known to have a function in at least one other protein. One of the principal limitations in minimotif prediction is that false positives limit the usefulness of this approach. As a step toward resolving this problem we have built, implemented, and tested a new data-driven algorithm that reduces false-positive predictions.

Methodology/Principal Findings

Certain domains and minimotifs are known to be strongly associated with a known cellular process or molecular function. Therefore, we hypothesized that by restricting minimotif predictions to those where the minimotif containing protein and target protein have …

Cadmium, Copper, Iron, And Zinc Concentrations In The Kidneys Of Grey Wolves (Canis Lupus) From Alaska, Idaho, Montana, And The Northwest Territories, Susan Blunck, Emily Jones, Kelly Petersen, Given Harper, Facutly Advisor, Jeffrey Frick, Faculty Advisor

John Wesley Powell Student Research Conference

No abstract provided.

Corrections To The Paper "Phytoplankton Productivity In The Tidal Regions Of Four Chesapeake Bay (Usa) Tributaries." Virginia Journal Of Science. 2007 58(4): 191-204, By K. K. Nesius, H. G. Marshall, And T.A. Egerton

Virginia Journal of Science

Necessary corrections associated with the paper "Phytoplankton productivity in the tidal regions of four Chesapeake Bay (USA) tributaries", originally published in Virginia Journal of Science Volume 58, Number 4, pages 191-204, in 2007, by K.K. Nesius, H.G. Marshall, and T.A. Egerton.

An Entrepreneurial Approach To Librarianship, Flora Shrode, Jennifer Duncan, Wendy Holliday

Library Faculty & Staff Publications

Librarians from Utah State University explain recent efforts to encourage subject librarians to take a more holistic view of their roles. We are shifting from a traditional emphasis primarily on collection development and refocusing on natural connections between collections, instruction, liaison, and reference service. The poster provides background about Utah State University’s situation and explains our approach to analyzing local needs and culture to inform development of a new organizational structure. We describe our vision of subject librarianship, the process by which we assessed librarians’ ideas and goals for performing as subject librarians, and the actions we are taking to …

Mojave Applied Ecology Notes Spring 2010, Anna San, Donovan J. Craig, Lindsay P. Chiquoine, Scott R. Abella, E. Cayenne Engel, Christina L. Lund, Jessica E. Spencer, Edward P. Weber Ph.D, Jill E. Craig

Mojave Applied Ecology Notes

Seed removal rates of Sahara mustard by rodents and ants, Mojave Desert Network exotic invasive inventory, gypsum roadside disturbance restoration update, new paper out on post-fire plant establishment, UNLV establishes school of environmental and public affairs

Volume 03, Cheryl Peck, Charles Hoever, Longwood Theater Department, Brittany Anderson, J. Ervin Sheldon, Richard Hayden, Yuri Calustro, Candice Fleming, Rebecca Franklin, Ashley Yocum, Danielle M. Jagoda, Cristina M. Valdivieso, Jameka Jones, Amy Ellis, Ashley Maser, Erikk Shupp, Jamie Yurasits, Joshua Davis, Alexander Leonhart, Kenny Wolfe, Sally Meadows, J. Haley, Amy Jackson, Morgan Howard, Adrienne Heinbaugh, Melissa Dorton, Ciarra Stalker

Incite: The Journal of Undergraduate Scholarship

Introduction from Dean Dr. Charles Ross

Little Shop of Horrors by Longwood Theater Department

Who Has the Hottest Hotsauce in Farmville: A Quantitative Comparison of Sauces from Local Restaurants by Cheryl Peck and Charles Hoever

Precipitation Effects on the Growth of White Oaks and Virginia Pines on the Mt. Vernon Plantation by Brittany Anderson

Design and Synthesis of Novel Ion Binding Molecules for Self-Assembly and Sensing Applications by J. Ervin Sheldon

A Statistical Analysis of Algorithms for Playing SameGame by Richard Hayden

Intersecting Cylinders at Arbitrary Angles by Yuri Calustro

Putting a Foot in the Revolving Door: Strategies for Reducing …

Barcoding Of Arrow Worms (Phylum Chaetognatha) From Three Oceans: Genetic Diversity And Evolution Within An Enigmatic Phylum, Robert M. Jennings, Ann Bucklin, Annelies Pierrot-Bults

Biology Faculty Publication Series

Arrow worms (Phylum Chaetognatha) are abundant planktonic organisms and important predators in many food webs; yet, the classification and evolutionary relationships among chaetognath species remain poorly understood. A seemingly simple body plan is underlain by subtle variation in morphological details, obscuring the affinities of species within the phylum. Many species achieve near global distributions, spanning the same latitudinal bands in all ocean basins, while others present disjunct ranges, in some cases with the same species apparently found at both poles. To better understand how these complex evolutionary and geographic variables are reflected in the species makeup of chaetognaths, we analyze …

Differential Damages Sustained From Hurricane Ike On Varying Growth Forms Of Coral At Distinct Locations Off The Coast Of South Caicos, Turks And Caicos Islands, Caitlyn A. Kenny

Pell Scholars and Senior Theses

In September 2008, Hurricane Ike hit South Caicos, Turks and Caicos Islands as a Category 4 hurricane. This study examines the differential damages caused to varying common growth forms, size, locations, and depths of coral by Hurricane Ike on South Caicos reefs. Belt transect techniques as well as line intercept techniques were conducted at nine sites, looking at 14 common species of coral, representing four different growth forms. A total of 9,011 coral colonies were surveyed. 2,832 colonies (31.4%) were found to have at least one type of damage. It was expected that branching and digitate growth forms as well …

Crop Updates 2010 - Genetically Modified Crops, Nutrition And Soils, James Fisher, Désirée Futures, Peter Tozer, Mike Jackson, John Moore, Jamees Neilsen, Geoff Anderson, Wen Chen, Richard Bell, Paul Blackwell, Allan Herbert, Stephen Davies, Ross Brennan, Mike Bolland, James Easton, Ryan Guthrie, Rowan Madderm, Robert Belford, Wal Anderson, Ian Edwards, Reg Lunt, Bill Bowden, Nigel Metz, Peter Newman, Breanne Best, Chris Gazey, Joel Andrew

Crop Updates

GENETICALLY MODIFIED CROPS

1. Evaluation of the environmental and economic impact of Roundup Ready® canola in the Western Australian crop production system, James Fisher and Désirée Futures, York, Western Australia, Peter Tozer, PRT Consulting, Armidale NSW

2. Controlling wild radish (Raphanus raphanistrum) in Roundup Ready®¹ Canola: Outcomes from the Nufarm 2009 Roundup Ready small plot trial Program, Mike Jackson, Nufarm Australia Limited

3. Weed strategies for glyphosate tolerant crops, John Moore, Department of Agriculture and Food

4. Results of the 2009 Western Australia Roundup Ready® canola trials, Dr James Neilsen, Canola Systems …

Fishing Industry Impact Study : James Price Point Proposed Liquefied Natural Gas Precinct, Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

A Framework For Automated Enrichment Of Functionally Significant Inverted Repeats In Whole Genomes, Cyriac Kandoth, Fikret ErçAl, Ronald L. Frank

Computer Science Faculty Research & Creative Works

Background: RNA transcripts from genomic sequences showing dyad symmetry typically adopt hairpin-like, cloverleaf, or similar structures that act as recognition sites for proteins. Such structures often are the precursors of non-coding RNA (ncRNA) sequences like microRNA (miRNA) and small-interfering RNA (siRNA) that have recently garnered more functional significance than in the past. Genomic DNA contains hundreds of thousands of such inverted repeats (IRs) with varying degrees of symmetry. But by collecting statistically significant information from a known set of ncRNA, we can sort these IRs into those that are likely to be functional.

Results: A novel method was developed to …

A Habitat Model For The Detection Of Two-Lined Salamanders At C. F. Phelps Wildlife Management Area, Fauquier And Culpeper Counties, Virginia, Jay Mcghee, Michael D. Killian

Virginia Journal of Science

Aquatic salamanders represent an important component of Virginia river watersheds, but despite potential declines, few specifics are known about their habitat preferences. We surveyed the habitats of the northern two-lined salamander and collected data on an array of habitat variables associated with the species. We used a logistic regression analysis to develop a model predicting its presence or absence for a given 50m-transect. Our final model incorporated the variation in stream depth and direction of stream flow and accounted for 25% of the variation in our data. We conclude that stream depth variation is an important feature of salamander habitat …

An Extraordinary Example Of Photokarren In A Sandstone Cave, Cueva Charles Brewer, Chimantá Plateau, Venezuela: Biogeomorphology On A Small Scale, Joyce Lundberg, Donald A. Mcfarlane, Charles Brewer-Carias

WM Keck Science Faculty Papers

A distinctive suite of small-scale erosional forms that are oriented towards the light occur close to the entrance of Cueva Charles Brewer, a large cave in a sandstone tepui, in SE Venezuela. These are the third example of photokarren ever studied in the world, the other two being from Borneo and Ireland. They are the only photokarren ever described from sandstone, and the only example from a non-carbonate environment. The host rock is a poorly-lithified unit of the Precambrian quartz arenite of the Roraima Supergroup. The forms are all oriented towards the light at 30° regardless of rock surface orientation. …

A Unique Population Of Cave Bears (Carnivora: Ursidae) From The Middle Pleistocene Of Kents Cavern, England, Based On Dental Morphometrics, Donald A. Mcfarlane, Martin Sabol, Joyce Lundberg

WM Keck Science Faculty Papers

The ‘breccia’ stratum from Kents (we follow local tradition in using the form ‘Kents’, without an apostrophe) Cavern, England, has been well known for its rich yield of cave-bear material since excavations began in the mid-19th century. Recent work has established that the bears are of latest MIS 12 or earliest MIS 11 age. A life table based on a collection of 67 molariform teeth is consistent with the use of the cave as a hibernaculum. Univariate and morphological assessment of the teeth shows an unusual range of primitive and more derived characters. Multivariate morphometric analysis of cave-bear teeth from …

Fecal Indicator Bacteria Concentrations In Furman Lake And Its Feeder Streams, Philip Hearn, T.J. Melton, Emily Tripp, Victoria Grimm-Oropesa

Furman Lake Restoration Book Gallery

A three page summary by four Furman students describing their research on fecal indicator bacteria in the Furman Lake and streams. The summary contains a map and bar charts.

Differences In Antibiotic Resistance In Fresh-Water Bacteria From Furman Lake And Feeder Streams, Dylan Richards, Clarissa Graham, Laura Snyder

Furman Lake Restoration Book Gallery

A one page summary by three Furman students describing their research on bacteria found in the Furman Lake.

The Effect Of Bioretention Areas On The Heavy Ion Concentration, Ph, And Water Quality Of The Furman University Lake, Adam Williams, Ashley Brown, Matthew Stutz

Furman Lake Restoration Book Gallery

A one page summary by four Furman students describing their research on the effectiveness of the bioretention areas, or rain gardens, created as part of the Lake Restoration Project.

The Distribution Of Macroalgae In Furman Lake, Anthony Guida, Jeff Hennessy, Meredith Yingling, Vanessa Argüello

Furman Lake Restoration Book Gallery

A three page summary by four Furman students describing their research on macroalge in the Furman Lake. The goal is to test whether or not the restoration efforts have significantly changed the algae cover in the lake.