Aquaculture and Fisheries Commons^™

Phylogenetic Analysis Of Tilapia Lake Virus (Tilv) Isolates From The Philippines Based On Partial Genome Segment 3 Sequences [Research Note], Dan Joseph C. Logronio, Joselito R. Somga, Maria Rowena R. Romana-Eguia, Sonia Somga, Demy Catedral, Gonzalo Jr Coloma

The Philippine Agricultural Scientist

This study aimed to expand current knowledge on TiLV genetic diversity by sequence analysis of a portion of genome segment 3 of TiLV detected from the Philippines. This includes a recently deposited sequence in GenBank (Accession No. LC504279) and six new sequences from cases of infection reported from 2017 to 2020. Phylogenetic analysis of 179 bp fragment of segment 3 showed that the seven TiLV isolates from the Philippines can be divided into three phylogenetic groups. When comparing all sequences, unique nucleotide substitutions and amino acids were noted among these groups. Variation in mortality rates in naturally infected samples was …

Houtman Abrolhos Islands Fish Habitat Protection Area: A Summary Of Marine Resource Use And Ecological Attributes, Scott N. Evans, Nick Konzewitsch, Lynda M. Bellchambers

Fisheries Research Reports

The Houtman Abrolhos Islands (Abrolhos) is an archipelago of up to 210 small islands and associated reefs located approximately 65-90 km offshore from Geraldton, Western Australia (WA). The islands and waters of the Abrolhos are of significance for both land-based and marine based values. The marine state territorial waters of the Abrolhos are managed by the Department of Primary Industries and Regional Development (DPIRD) as the Houtman Abrolhos Islands Fish Habitat Protection Area (Abrolhos FHPA). This report aims to provide a summary of the DPIRD data on aquatic resource use (e.g., aquaculture, commercial, recreational and charter fishing) and ecological attributes …

Global And Regional Sea Level Rise Scenarios For The United States: Updated Mean Projections And Extreme Weather Level Probabilities Along U.S. Coastlines, William V. Sweet, Benjamin D. Hamlington, Robert E. Kopp, Christopher P. Weaver, Patrick L. Barnard, David Bekaert, William Brooks, Michael Craghan, Gregory Dusek, Thomas Frederikse, Gregory Garner, Ayesha S. Genz, John P. Krasting, Eric Larour, Doug Marcy, John J. Marra, Jayantha Obeysekera, Mark Osler, Matthew Pendleton, Daniel Roman, Lauren Schmied, Will Veatch, Kathleen D. White, Casey Zuzak

National Oceanographic and Atmospheric Administration: Technical Reports and Related Materials

This report and accompanying datasets from the U.S. Sea Level Rise and Coastal Flood Hazard Scenarios and Tools Interagency Task Force provide 1) sea level rise scenarios to 2150 by decade that include estimates of vertical land motion and 2) a set of extreme water level probabilities for various heights along the U.S. coastline. These data are available at 1-degree grids along the U.S. coastline and downscaled specifically at NOAA tide-gauge locations. Estimates of flood exposure are assessed using contemporary U.S. coastal flood-severity thresholds for current conditions (e.g., sea levels and infrastructure footprint) and for the next 30 years (out …

Crassostrea Gigas Invasion In Southern California: Macrofaunal Diversity And Local Community Impacts Of Ecosystem Engineers On Estuarine Habitats, Noah Jansen-Yee

Theses

Many marine ecosystems are facing the growing threat of biological invasions. These invasions can have a variety of different impacts on ecosystems and their inhabitants. The Pacific oyster, Crassostrea gigas, is currently in the relatively early stages of invasion in San Diego estuaries. Crassostrea gigas is a large, filter-feeding bivalve that forms dense oyster beds on hard substrate. These oysters are known to outcompete native counterparts and drastically alter habitats where they are present. Crassostrea gigas is an ecosystem engineer that, through shell creation and formation of a dense oyster matrix, impacts ecosystems in a variety of direct and indirect …

Invasive Plants Watch List: 2022, Allison Zach

Nebraska Invasive Species Program

The purpose of the weed watch list is to collect data on the distribution of invasive plants found in various Nebraska counties. Counties were divided up into ‘ecoregions’ based on the Nebraska Game & Parks Commission’s Legacy Plan (map of regions below). The plants in the watch list have been identified based on their invasiveness in surrounding states and their increasing range in Nebraska. Data collected on watch list plant species distribution has been used to support the listing or delisting of noxious weeds. Plant species in the weed watch list are categorized based on early detection and rapid response …

Translocation Of Timber Rattlesnakes At Two West Virginia State Forests, Elizabeth Morgan Johnson

Theses, Dissertations and Capstones

In wildlife management, translocation is defined as the purposeful movement of an individual(s) from one place to another with a wildlife management goal. Translocation has become a common tool for mitigating negative human-wildlife interactions. We conducted a translocation study on timber rattlesnakes (Crotalus horridus) in response to numerous human-rattlesnake encounters with the goal of developing a translocation protocol that would allow natural resources personnel to mitigate negative encounters between the public and rattlesnakes and reduce impacts to local timber rattlesnake populations. In this study, we scaled translocation distance to site-specific home range characteristics to assess whether translocation outcomes …

Western Australian Sea Cucumber Resource Assessment Report, A.M. Hart, D.M. Murphy, F.F. Fabris

Fisheries Research Reports

No abstract provided.

Ecological Risk Assessment For The Western Rock Lobster Resource : Workshop Procedure And Outcomes, R Stoklosa

Fisheries Occasional Publications

No abstract provided.

Species-Specific Responses To Landscape Features Shaped Genomic Structure Within Alaska Galliformes, Sarah A. Sonsthagen, Robert E. Wilson, Sandra L. Talbot

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Aim: Connectivity is vital to the resiliency of populations to environmental change and stochastic events, especially for cold-adapted species as Arctic and alpine tundra habitats retract as the climate warms. We examined the influence of past and current landscapes on genomic connectivity in cold-adapted galliformes as a critical first step to assess the vulnerability of Alaska ptarmigan and grouse to environmental change. We hypothesize that the mosaic of physical features and habitat within Alaska promoted the formation of genetic structure across species.

Location: Alaska, United States of America.

Taxa: Ptarmigan and Grouse (Galliformes: Tetraoninae).

Methods: We collected double digest restriction-site- …

Fish Community Trends In The Greenup Pool, Ohio River, Nathaniel Kingsley Fleshman

Theses, Dissertations and Capstones

Bighead carp (Hypophthalmichthys nobilis) and silver carp (H. molitrix), collectively referred to as Asian carps, are invasive species that may negatively affect native species through plankton resource exploitation mechanisms. Bighead and silver carp escaped into the Mississippi River basin in the early 1970s and have been steadily migrating upstream. The Greenup Pool lies upstream of the current known invasion of Asian carp in the Ohio River. The Ohio River Valley Water Sanitation Commission (ORSANCO) has conducted probabilistic electrofishing community surveys in the Greenup Pool since 2006 on a five-year cycle. The objective of this study was …

Spatial And Temporal Variability Of Mercury In Upper And Lower Red Lake Walleye, Tyler Orgon

Biology Graduate Theses

Mercury is a global pollutant that is released into our environment by natural and anthropogenic processes resulting in extensive studies conducted on mercury cycling in aquatic ecosystems which has led to the issuance of human-health-based fish-consumption advisories. We examined total mercury concentrations in Walleye Sander vitreus from Upper and Lower Red Lakes, located in north central Minnesota, between 2019 and 2020. Upper and Lower Red Lake form a contiguous water body consisting of two large (483.1 and 665.6 km2, respectively) basins that are naturally connected by a 1.4 km-wide strait. Both basins are important fisheries for recreation, subsistence, and commercial …

Stomach Contents And Stable Isotope Analysis Reveal Ontogenetic Shifts And Spatial Variability In Brama Australis Diet, Sebastian A. Klarian, Eric T. Schultz, María Francisca Hernández, Juan Antonio Valdes, Francisco Fernandoy, Mónica Barros, Sergio Neira, Hugo Arancibia

EEB Articles

Many marine fisheries rely on production and energy flow in the pelagic zone, thus sustainable management of exploited pelagic fishes benefits from insight into temporal, spatial and ontogenetic variability in the trophic ecology of these species. Here we analyze stomach contents and stable isotopes to reveal spatial variability (focusing on two fishing grounds, north and south of an oceanographic barrier in the Pacific Ocean) and ontogenetic changes (contrasting immature and mature) in Southern Ray’s Bream (Brama australis) diet composition in Chilean waters. Stomach contents analysis indicated that euphausiids were predominant components of the diet in both fishing grounds and ontogenetic …

Seasonal Reproductive Allocation In Landlocked Alewife Alosa Pseudoharengus, In The Context Of Niche Construction And Eco-Evolutionary Feedbacks, Foivos Mouchlianitis, Eric T. Schultz, Kostas Ganias

EEB Articles

The bidirectional dynamics between species and their biotic and abiotic environments, known as eco-evolutionary feedbacks, may shift the direction of evolution and alter the ecological role of species. Alewife, Alosa pseudoharengus, is an exemplary species to study reciprocal feedbacks between ecology and evolution, owing to repeated independent derivations of a landlocked life history from an ancestral anadromous form. In this study we analysed the reproductive allocation during the spawning season in a landlocked Alewife population in the context of eco-evolutionary feedbacks. We also compared our findings with previous results from a neighbouring anadromous population of the species. Similarities were found …

Decapods As Food, Companions And Research Animals: Legal Impact Of Ascribing Sentience, Jonathan J. Cooper, Ambrose Tinarwo, Beth A. Ventura

Animal Sentience

This commentary provides an overview of the practical implications of attributing sentience to protect decapods as food, companion and research animals in the UK context. Recognising their capacity to suffer has implications for humane slaughter in farming and fishing sectors. It should also place a greater duty of care on owners of captive decapods, considering their needs and avoiding unnecessary suffering. The recognition of decapod sentience should also have an impact on their protection as research animals, although research with a potential to cause suffering may be needed to better understand decapods’ capacity to suffer.

Evaluation Of Hemp Seed Meal As A Fish Meal Replacement Through Growth And Digestibility Trials In Striped Bass (Morone Saxatilis), Anthony Sample

College of Graduate Studies: Theses & Dissertations

Demand for seafood has continued to increase despite a stagnation in global wild-caught fisheries. Aquaculture has met this demand but suffers from numerous sustainability issues because of dependence on fish meal, which is unsustainable, sparking nutritional research into alternatives. Hemp seed meal has shown promise as an alternative due to its sustainable production and nutritional qualities. This study evaluated hemp seed meal as an alternative to fish meal through growth and digestibility trials with Morone saxatilis. A seven-week growth trial was conducted within a recirculating aquaculture system using a total of two control diets (commercial and constructed) and six …

Selected Dietary Plant-Based Proteins For Growth And Health Response Of Nile Tilapia Oreochromis Niloticus, Tzodoq O. Magbanua, Janice A. Ragaza

Biology Faculty Publications

Tilapia culture is one of the largest sectors of global aquaculture. Among the different species of tilapia, Nile tilapia (Oreochromis niloticus) is perhaps the top cultured species. The production of Nile tilapia has been continually increasing throughout the years resulting in genetic deterioration. Several tilapia strains with better growth performance and adaptive capability to survive in different culture conditions have been developed to alleviate the crisis. Increased demand for Nile tilapia implies higher farming cost. Plant-based proteins are utilized as partial or complete fishmeal replacements to reduce feed cost. However, these proteins can adversely affect and alter growth …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2022., Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Gretchen Bielmyer-Fraser, John Burr, Dale Casamatta, Charles Closmann, Brian P. Zoellner, Ashley Johnson, An-Phong Le, William Penwell, Radha Pyati

State of the River Report

No abstract provided.

Analysis Of Hematocrit Levels In Walleye Sander Vitreus From Similar Waterbodies, Alyssa Hauser

Journal of Earth and Life Science

Walleye Sander vitreus are a popular fish among anglers and hold a prominent place in Minnesotan’s identity as their state fish. Because of this, multiple management practices are used to ensure the continued health of their populations within Minnesota waters. In this study, the process of analyzing hematocrit levels was used to determine if the analysis of hematological parameters could be a useful tool in detecting differences in population health. To evaluate this, blood samples were acquired from age-0 and age-1 fish from two similar lakes and run through a hematocrit centrifuge to separate platelets from plasma to read the …

The Effects Of Diet On Yellow Perch Morphology Throughout Lake Bemidji, Quiana L. Radaich

Journal of Earth and Life Science

Morphology is very important as it looks at the arrangement of an organism’s parts to determine their functionality, development, and how they could have changed through evolution. It is also important for the identification of species as it can show how closely species are related. This study examines if the morphology of yellow perch changes throughout Lake Bemidji. Along with examining a subset of five stomachs for each group (A-F) of yellow perch collected to determine if diet was a driving force behind morphological changes. The data collected in this study suggested that morphology does change throughout Lake Bemidji and …

Final Report Floating Upwelling System Harvest Road Oceans, Robert Michael, Scott Bennett

Fisheries Occasional Publications

A Floating Upwelling System or FLUPSY is a mechanical system for the culture of seed stock during the nursery stage of commercial bivalve production.

Comparison Of Bigheaded Carp Reproduction In Tributaries Of The Illinois And Wabash Rivers, David J. Yff

Masters Theses

Understanding environmental conditions that support bigheaded carp (Hypophthalmichthys sp.) reproduction in tributary rivers provides key predictions of their invasion throughout the United States. Past research, primarily in larger order rivers, identified factors such as discharge, temperature, and turbidity as main environmental drivers of bigheaded carp reproduction. I used the variable hydrologic conditions between the Illinois and Wabash Rivers to compare environmental conditions between tributaries of each basin, determine which conditions influence bigheaded carp reproduction in tributaries, and predict tributaries likely to support bigheaded carp reproduction. Three tributaries of the Illinois and Wabash Rivers were sampled for ichthyoplankton from …

Differences In The Growth And Bioenergetics Between Centrarchids In A Midwestern Power Plant Lake, Kyle Joseph Rempe

Masters Theses

Black Crappie Pomoxis nigromaculatus and Bluegill Lepomis macrochirus are popular sportfishes that co-occur in similar bodies of water throughout most of the Central and Eastern United States but have distinct thermal physiologies. L. macrochirus is often found in warmer regions of freshwater reservoirs, where P. nigromaculatus tends to exploit cooler regions, especially in power plant cooling reservoirs. The coal-fired Coffeen Power Station ceased energy production in October 2019, providing an ideal scenario to study the organismal effects of the sudden shift in thermal regime. Previous studies showed that P. nigromaculatus inhabited the less thermally-impacted areas of Coffeen Lake, whereas L. …

Living In A Gradient: The Influence Of Water Temperature Variation On Development, Settling Time And Survival Of Pallid Sturgeon Larvae In The Missouri River, Maria Elizabeth Erceg

Electronic Theses and Dissertations

Pallid Sturgeon (Scaphirhynchus albus) are a federally endangered species experiencing widespread reproduction and recruitment failures. Recruitment failure is hypothesized to be caused by habitat modifications made to the Missouri River that disrupt connectivity and alter temperature profiles downstream of constructed dams. Hypolimnetic releases from Missouri River dams affect the temperature downstream, creating colder conditions during the downstream drifting phase for dispersing larvae. Understanding the influence of water temperature changes on larval development is crucial for recovery efforts. In this study, we evaluated the effects of water temperature daily heating rate on energy use, settling behavior, and growth rate of endogenously …

Spatio-Temporal Movement Patterns Of Sub-Adult Adfluvial Bull Trout, Aimee Taylor

All Master's Theses

Bull Trout in the Yakima River basin of Washington are primarily adfluvial, often using managed lakes as habitat. Kachess Lake, composed of Big and Little Kachess Lakes, is managed by the Bureau of Reclamation (BOR) for water storage. BOR plans to build a structure that can withdraw an additional 200,000 acre-feet of water in drought years, which would disconnect the two basins for multiple years. This study examined the spatio-temporal movement of sub-adult Bull Trout in Kachess Lake to understand distribution patterns and the effects of environmental variables. We sought to answer 1) does time (week of the year), diel …

Relating Habitat Use To Survival Of Oncorhynchus In Rock Creek And The Clark Fork River, Brett D. Traxler

Undergraduate Theses, Professional Papers, and Capstone Artifacts

Westslope Cutthroat Trout Oncorhynchus clarkii lewisi (WCT) is a native trout species of conservation concern in Montana. Both migratory and resident life histories can be found in cutthroat from the same natal stream. Habitat degradation and hybridization with rainbow trout O. mykiss (RBT) have resulted in few genetically pure, migratory WCT populations persisting in large river systems. These WCT conservation populations are occurring more and more as isolated, resident populations in headwater streams. Rock Creek in Western MT has retained a unique population of migratory, non-hybridized WCT, and is of special conservation and ecological interest. As we work to protect …

Heterogeneity Of Recreationists In A Park And Protected Area, Olivia A. Darugna, Mark A. Kaemingk, Christopher J. Chizinski, Kevin L. Pope

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Limited information and resources have caused many parks and protected areas (PPAs) to functionally manage recreationists as a single homogeneous group, despite potential negative social and ecological consequences. We aimed to evaluate the homogeneity of recreationists at the Valentine National Wildlife Refuge (NWR) by 1) quantifying frequencies of consumptive (i.e., hunting), intermediate-consumptive (i.e., fishing), and non-consumptive recreational-activity groups (e.g., wildlife viewing), and 2) evaluating sociodemographic differences among these groups. We used onsite surveys to determine that Valentine NWR supports heterogeneous groups of recreationists. The intermediate-consumptive group was most frequent (77% of all parties). All three recreational-activity groups varied in party …

Finding The Best Predictors For Foot Traffic In Us Seafood Restaurants, Isabel Paige Beaulieu

Honors Theses and Capstones

COVID-19 caused state and nation-wide lockdowns, which altered human foot traffic, especially in restaurants. The seafood sector in particular suffered greatly as there was an increase in illegal fishing, it is made up of perishable goods, it is seasonal in some places, and imports and exports were slowed. Foot traffic data is useful for business owners to have to know how much to order, how many employees to schedule, etc. One issue is that the data is very expensive, hard to get, and not available until months after it is recorded. Our goal is to not only find covariates that …

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 2. Assessing Economic Impacts, Andrew M. Scheld, Jennifer Beckensteiner, Daphne M. Munroe, Eric N. Powell, Sarah Borsetti, Eileen E. Hofmann, John M. Klinck

CCPO Publications

The Atlantic surfclam (Spisula solidissima) fishery generates approximately USD 30 million in landings revenues annually, distributed across ports throughout the US Mid-Atlantic and Northeast. Overlap between areas of Atlantic surfclam harvests and offshore wind energy leasing make the fishery vulnerable to exclusion and effort displacement as development expands in the region. An existing integrated bioeconomic agent-based model, including spatial dynamics in Atlantic surfclam stock biology, heterogeneous captain behaviour, and federal management processes, was extended to incorporate costs and revenues for fishing vessels and processors and used to evaluate the potential economic effects of offshore wind development on the …

The Atlantic Surfclam Fishery And Offshore Wind Energy Development: 1. Model Development And Verification, Daphne M. Munroe, Eric N. Powell, John M. Klinck, Andrew M. Scheld, Sarah Borsetti, Jennifer Beckensteiner, Eileen E. Hofmann

CCPO Publications

Competing pressures imposed by climate-related warming and offshore development have created a need for quantitative approaches that anticipate fisheries responses to these challenges. This study used a spatially explicit, ecological-economic agent-based model integrating dynamics associated with Atlantic surfclam stock biology, decision-making behavior of fishing vessel captains, and fishing fleet behavior to simulate stock biomass, and fishing vessel catch, effort and landings. Simulations were implemented using contemporary Atlantic surfclam stock distributions and characteristics of the surfclam fishing fleet. Simulated distribution of fishable surfclam biomass was determined by a spatially varying mortality rate, fishing by the fleet was controlled by captain decisions …

Life History Of Swordfish, Xiphias Gladius, Caught In The Northern Gulf Of Mexico, Anna K. Millender, Jeremy M. Higgs, Nancy J. Brown-Peterson, Michael J. Andres, James S. Franks

Gulf and Caribbean Research

The current study examined 93 Swordfish, Xiphias gladius, (64 females, 27 males, 2 unknown) ranging in size from 77.6–246.3 cm lower jaw fork length (LJFL) from the northern Gulf of Mexico (GOM). Samples were collected between March and August in 2005–2007, 2017–2019 and 2021. Age estimates of 51 Swordfish resulted in a maximum observed age of 11 years (205.0 cm LJFL) and 7 years (190.4 cm LJFL) for females and males, respectively. Observed and back—calculated length—at—age data were fitted to 4 growth models (2— and 3— parameter von Bertalanffy, Gompertz, and logistic). The 2—parameter von Bertalanffy was the model …