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Primary Industries Development Research Highlights 2021, Department Of Primary Industries And Regional Development, Tim Scanlon

Books & book chapters

The Primary Industries Development Research Highlights 2021 showcases the breadth and depth of the Department of Primary Industries and Regional Development’s research and development activities over the past several years.

Stories featured in Research Highlights 2021 stem from about 60 (of 140) current and recently-completed projects undertaken by the Department of Primary Industries and Regional Development’s (DPIRD) 1100 scientists, technical experts and economists throughout the State.

Explore our Research Highlights 2021.

The publication demonstrates the innovative and applicable research that DPIRD and its collaborators and investment partners deliver to Western Australia.

Download the Research Highlights 2021 here. Alternatively, …

Meat Tenderness: Advances In Biology, Biochemistry, Molecular Mechanisms And New Technologies, Robyn D. Warner, Tommy L. Wheeler, Minh Ha, Xin Li, Alaa El-Din Bekhit, James Morton, Rozita Vaskoska, Frank R. Dunshea, Rui Lui, Peter Purslow, Wangang Zhang

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Meat tenderness is an important quality trait critical to consumer acceptance, and determines satisfaction, repeat purchase and willingness-to-pay premium prices. Recent advances in tenderness research from a variety of perspectives are presented. Our understanding of molecular factors influencing tenderization are discussed in relation to glycolysis, calcium release, protease activation, apoptosis and heat shock proteins, the use of proteomic analysis for monitoring changes, proteomic biomarkers and oxidative/nitrosative stress. Each of these structural, metabolic and molecular determinants of meat tenderness are then discussed in greater detail in relation to animal variation, postmortem influences, and changes during cooking, with a focus on recent …

How To Avoid The Use Of Chemicals To Control Parasites In Salmon Farming?, Cintya Gajardo Vejar

International Programs

The development of salmon farming in the world has been accompanied by a number of conditions like parasitism by Sea Lice (Caligus rogercresseyi), this problem occurs in the fattening stage of Atlantic Salmon (Salmo salar) in the sea, increasing mortality and generating economic losses. The salmon industry efforts have focused on resolving the Sea Lice parasitism (C. rogercresseyi) through the use of antibiotics to control the infestation and the use of vaccines to prevent it, but it presents biological implications for salmon, the marine environment and human health.

Behavioral And Productive Parameters Of Lactating Dairy Cows As Indicators Of The Early Detection Of Metabolic And Digestive Diseases, Juan Manuel Vergara

International Programs

No abstract provided.

The Age And Growth Of The Yellow Stingray (Urobatis Jamaicensis) In Southeast Florida, Jessica Schieber

All HCAS Student Capstones, Theses, and Dissertations

The yellow stingray, Urobatis jamaicensis (Cuvier 1816), is a coastal species that has limited known life-history information, especially regarding their age and growth patterns. Age estimates were assigned by counting band-pairs deposited on the vertebral centrum of stingrays caught between 2003 and 2019 (n = 195). Marginal increment analysis of different size classes was used to validate age estimates, with the largest class having verified annual band deposition (ANOVA, F(9,7), P = 0.029). Age estimates ranged between females, and rates, but females attained larger sizes with the largest observed DW being 241-mm and 216-mm for females and males, respectively. …

Chronic Wasting Disease In Utah - Development Of A Risk Based Cwd Surveillance System With Updates For The Statewide Cwd Management Plan, Erica Stuber

Funded Research Records

No abstract provided.

Comparison Of Bovine Mammary Involution And Intramammary Infections Following Intramammary Treatment With Casein Hydrolysate And Other Conventional Treatments At Dry-Off, Justine E. Britten, Kerry A. Rood, David J. Wilson

Animal, Dairy, and Veterinary Science Student Research

Alternatives to routine antibiotic treatment of dairy cattle during the dry period before their next calving are of interest. This was a preliminary study of whether intramammary infusion of casein hydrolysate, administered alone or combined with standard dry treatment, accelerated the rate of mammary involution early in the dry period. Four treatments were studied in a split udder design. One udder half was assigned a treatment, and the contralateral half was administered dry cow treatment + internal teat sealant as a control. Treatments were casein hydrolysate, casein hydrolysate + dry cow treatment, casein hydrolysate + teat sealant and casein hydrolysate …

Assessing The Short-Term Effects Of Translocation On Freshwater Mussels: Is Habitat Or Water Quality More Important?, Joshua D. Arnold

Masters Theses

Freshwater mussels (Order: Unionida) are very important to the function of aquatic ecosystems and are typically indicators of good water quality. They provide a valuable link between the water column and the benthic substrate in which they live and are a valuable food resource for many species of animals. However, most species native to North America are currently threatened with extinction, to the point that more than 70% of native freshwater mussels are listed as either threatened or endangered at the state or federal level. The cause of this decline can be attributed to historical over exploitation, habitat alteration, and …

Effect Of A Trace Mineral Injection On Performance And Trace Mineral Status Of Beef Cows And Calves, Carmen J. Willmore, John B. Hall, Mary E. Drewnoski

Department of Animal Science: Faculty Publications

The objective was to determine the effects of an injectable trace mineral (TMI; Multimin 90) containing copper (Cu), manganese (Mn), selenium (Se), and zinc (Zn) on trace mineral status and the resulting impacts on reproduction of beef cows and the growth of their calves. Beef cows (n = 200) were assigned to receive TMI or no injection (CON) prior to calving and breeding over two consecutive years. Calves born to cows receiving TMI also received TMI at birth in both years and at 49 ± 1.3 days of age in year 1. The TMI increased (p = 0.01) liver Zn …

Using Predator Vocalizations To Deter Raccoon Predation On Nests Of Diamondback Terrapins (Malaclemys Terrapin), Colleen Elizabeth Naeger

Electronic Theses and Dissertations

No abstract provided.

Three Newly Recorded Genera And Species Of Gobiid Fishes (Teleostei: Gobiidae) From The Dongsha Atoll (Pratas Islands), South China Sea, Shao-Liang Hsu, Ta-Kang Liu, Kwang-Tsao Shao, Kuan-Te Chen, I-Shiung Chen

Journal of Marine Science and Technology–Taiwan

Three newly recorded gobiid genera of coral-reef gobies have been collected and examined by scuba diving in the Dongsha Atoll, also known as the Pratas Islands, South China Sea. They are Feia Smith, 1959; Sueviota Winterbottom and Hoese, 1988; and Trimmatom Winterbottom and Emery, 1981. These three genera were formerly unrecorded in the Dongsha Atoll and all Taiwanese waters before this paper. One representing species was found for each gobiid genus. The diagnosis for these three newly recorded species and genera will be provided in this paper.

Pollination Habitat And Flower Plating For City Beautification, Jim Speer

2021 Spring Reports (Sullivan)

The City of Sullivan identified needs to improve sustainable infrastructure and green space in Sullivan, IN through their Quality of Life plan. Students in ENVI460 were tasked with providing recommendations for their daily operations and site plans that could improve habitats and attractiveness for the community and tourists. Students provided recommendations for native habitat planting and community involvement/education. They also provided site recommendations for community garden and green space updates.

Craniometric Analysis Of European Rabbit (Oryctolagus Cuniculus) Breeds To Trace Out Intraspecific And Inter Gender Morphometric Variations, Muhammad Rizwan, Rana Manzoor Ahmad, Abdul Majid Khan, Misbah Khalid, Muhammad Wajid

Journal of Bioresource Management

The family Liproidae expresses the significant variation of morphometric features at species level. In already available literature on the European rabbit (Oryctolagus cuniculus) the idea is proposed that there can be variation in the morphometric character of different breeds of Oryctolagus cuniculus but there are negligible scientific research base evidences for it. So in this study interbreed craniometric comparison of the European rabbit is carried out to trace out their intergender and intraspecific morphometric variations. The study material consists of 32 sexually mature rabbits belong to two breeds of European rabbit that are New Zealand rabbit (eight males and …

Invader Removal Triggers Competitive Release In A Threatened Avian Predator, J. David Wiens, Katie M. Dugger, J. Mark Higley, Damon B. Lesmeister, Alan B. Franklin, Keith A. Hamm, Gary C. White, Krista E. Dilione, David C. Simon, Robin R. Bown, Peter C. Carlson, Charles B. Yackulic, James D. Nichols, James E. Hines, Raymond J. Davis, David W. Lamphear, Christopher Mccafferty, Trent L. Mcdonald, Stan G. Sovern

United States Department of Agriculture Wildlife Services: Staff Publications

Changes in the distribution and abundance of invasive species can have far-reaching ecological consequences. Programs to control invaders are common but gauging the effectiveness of such programs using carefully controlled, large-scale field experiments is rare, especially at higher trophic levels. Experimental manipulations coupled with long-term demographic monitoring can reveal the mechanistic underpinnings of interspecific competition among apex predators and suggest mitigation options for invasive species. We used a large-scale before-after control-impact removal experiment to investigate the effects of an invasive competitor, the barred owl (Strix varia), on the population dynamics of an iconic old-forest native species, the northern spotted owl …

Professor Edward Drinker Cope’S Travels Through North Carolina, August–December 1869: Insights From The Transcriptions And Annotations Of Letters To His Father And His Contributions To North Carolina Ichthyology, Bryn H. Tracy, Robert E. Jenkins

Southeastern Fishes Council Proceedings

Since 1870, ichthyologists have pondered Edward Drinker Cope’s two publications: “On some Etheostomine Perch from Tennessee and North Carolina” and “A Partial Synopsis of the Fishes of the Fresh Waters of North Carolina”, along with correspondences to his father while traveling in North Carolina. We transcribed and annotated four of his letters searching for further knowledge regarding his field notebook(s) and original data (meristics, morphometrics, life coloration, etc.) from his travels across NC during Summer and Fall of 1869. However, unresolved questions remained - many related to unaccounted for periods of time. We did not achieve insights into …

Classifying Ingestive Behavior Of Dairy Cows Via Automatic Sound Recognition, Guoming Li, Yijie Xiong, Qian Du, Zhengxiang Shi, Richard S. Gates

Department of Animal Science: Faculty Publications

Determining ingestive behaviors of dairy cows is critical to evaluate their productivity and health status. The objectives of this research were to (1) develop the relationship between forage species/heights and sound characteristics of three different ingestive behaviors (bites, chews, and chew-bites); (2) comparatively evaluate three deep learning models and optimization strategies for classifying the three behaviors; and (3) examine the ability of deep learning modeling for classifying the three ingestive behaviors under various forage characteristics. The results show that the amplitude and duration of the bite, chew, and chew-bite sounds were mostly larger for tall forages (tall fescue and alfalfa) …

Pilot-Scale H2S And Swine Odor Removal System Using Commercially Available Biochar, Kyoung S. Ro, Brian Woodbury, Mindy Spiehs, Ariel A. Szogi, Philip J. Silva, Okhwa Hwang, Sungback Cho

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Although biochars made in laboratory seem to remove H2S and odorous compounds effectively, very few studies are available for commercial biochars. This study evaluated the efficacy of a commercial biochar (CBC) for removing H2S and odorous volatile organic compounds (VOCs). We found that the well-known Ergun equation may not be adequate in predicting pressure drop for properly sizing a ventilation system. The H2S breakthrough adsorption capacity of the CBC was 2.51 mg/g under humid conditions, which was much higher than that for dry conditions. The breakthrough capacity increased with the influent concentration of H2S. The efficacy of a pilot-scale biochar …

The Ovarian Follicle Of Ruminants: The Path From Conceptus To Adult, Jennifer L. Juengel, Robert A. Cushman, Joëlle Dupont, Stéphane Fabre, Richard G. Lea, Graeme B. Martin, Francesca Mossa, Janet L. Pitman, Christopher A. Price, Peter Smith

Roman L. Hruska U.S. Meat Animal Research Center: Reports

This review resulted from an international workshop and presents a consensus view of critical advances over the past decade in our understanding of follicle function in ruminants. The major concepts covered include: (1) the value of major genes; (2) the dynamics of fetal ovarian development and its sensitivity to nutritional and environmental influences; (3) the concept of an ovarian follicle reserve, aligned with the rise of anti-Müllerian hormone as a controller of ovarian processes; (4) renewed recognition of the diverse and important roles of theca cells; (5) the importance of follicular fluid as a microenvironment that determines oocyte quality; (6) …

Evolution Of The Sheep Industry And Genetic Research In The United States: Opportunities For Convergence In The Twenty-First Century, J. W. Thorne, B. M. Murdoch, B. A. Freking, R. R. Redden, Thomas W. Murphy, J. B. Taylor, Harvey D. Blackburn

Roman L. Hruska U.S. Meat Animal Research Center: Reports

The continuous development and application of technology for genetic improvement is a key element for advancing sheep production in the United States. The US sheep industry has contracted over time but appears to be at a juncture where a greater utilization of technology can facilitate industry expansion to new markets and address inefficiencies in traditional production practices. Significant transformations include the increased value of lamb in relation to wool, and a downtrend in large-scale operations but a simultaneous rise in small flocks. Additionally, popularity of hair breeds not requiring shearing has surged, particularly in semi-arid and subtropical US environments. A …

Economic Contribution Of The Agricultural Sector To The Arkansas Economy In 2019, Leah English, Jennie Popp, Wayne Miller

AAES Research Reports and Research Bulletins

Agriculture and associated agricultural activities are major contributors to the Arkansas economy. Agriculture is defined as the sum of agricultural production and processing activities, unless otherwise specified, and includes crop and animal production and processing, agricultural support industries, forestry and forest products, and textile goods. Agriculture contributes to the economy through direct agricultural production and value-added processing, leading to economic activity in other parts of the economy.

This report is the fourteenth in a series that examines agriculture’s economic contribution to the Arkansas economy. The total economic contribution of agriculture (direct, indirect, and induced effects) on value added, employment, and …

Influence Of Estradiol On Bovine Trophectoderm And Uterine Gene Transcripts Around Maternal Recognition Of Pregnancy, Emmalee J. Northrop-Albrecht, Jerica J.J. Rich, Robert A. Cushman, Runan Yao, Xijin Ge, George A. Perry

Roman L. Hruska U.S. Meat Animal Research Center: Reports

Embryo survival and pregnancy success is increased among animals that exhibit estrus prior to fixed time-artificial insemination, but there are no differences in conceptus survival to d16. The objective of this study was to determine effects of preovulatory estradiol on uterine transcriptomes, select trophectoderm (TE) transcripts, and uterine luminal fluid proteins. Beef cows/heifers were synchronized, artificially inseminated (d0), and grouped into either high (highE2) or low (lowE2) preovulatory estradiol. Uteri were flushed (d16); conceptuses and endometrial biopsies (n = 29) were collected. RNA sequencing was performed on endometrium. Real-time polymerase chain reaction (RT-PCR) was performed on TE (n = 21) …

Kentucky Warbler (Vol. 97, No. 3), Kentucky Library Research Collections

The Kentucky Warbler

No abstract provided.

Imputation Of Missing Count Data Of Recreational Boat Retrievals From Remote Camera Surveys In The Perth Metropolitan Region, Western Australia, E. Afrifa-Yamoah, S.M Taylor, Cameron J. Desfosses, U. A. Mueller

Fisheries Research Reports

In Western Australia (WA), remote cameras have been used to monitor boating activity at boat ramps since 2006 to assist in ongoing recreational fishing surveys. These monitoring schemes are useful tools to validate boating activity (defined here as the number of retrievals) and to corroborate estimates of recreational fishing effort obtained from other surveys. This is because remote cameras (also referred to as digital cameras) can provide complete coverage (i.e. 24 hours, 365 days) of boating activities.

Administrative Guideline No.3: The Management Of Errors In Reported Entitlement Taken In The West Coast Rock Lobster Managed Fishery, Department Of Primary Industries And Regional Development

Fisheries Administrative Guidelines

These Administrative Guidelines address how errors in the submission of reported net weights in the West Coast Rock Lobster Managed Fishery (the Fishery) are to be managed. There is an onus on the Master and the Registered Receiver to provide accurate information when submitting the weight (in kilograms) of rock lobster taken for each consignment, under the West Coast Rock Lobster Managed Fishery Management Plan 2012 (the Plan).

Breed And Heterotic Effects For Mature Weight In Beef Cattle, Madeline J. Zimmermann, Larry A. Kuehn, Matthew L. Spangler, R. M. Thallman, Warren M. Snelling, Ronald M. Lewis

Department of Animal Science: Faculty Publications

Cow mature weight (MWT) is heritable and affects the costs and efficiency of a breeding operation. Cow weight is also influenced by the environment, and the relationship between the size and profitability of a cow varies depending on production system. Producers, therefore, need tools to incorporate MWT in their selection of cattle breeds and herd replacements. The objective of this study was to estimate breed and heterotic effects for MWT using weight-age data on crossbred cows. Cow's MWT at 6 yr was predicted from the estimated parameter values-asymptotic weight and maturation constant (k)-from the fit of the Brody function to …

Pilot Testing A Survey Instrument To Evaluate Eaat Professionals' Views On The Effects Of Equine-Assisted Activities And Therapies On Hope And Depression In Court-Involved Youth, Emily Stewart

Animal Science Undergraduate Honors Theses

Equine Assisted Activity and Therapy (EAAT) programs have proven beneficial for individuals with mental, physical and psychological ailments. Only in the last few years have court systems begun to utilize the complex nature of the human-horse relationship to benefit the lives of court-involved youth. Despite its novelty, the few existing studies in this field yield positive results (Frederick et al., 2015). To address the need for further research in this area, a pilot study was conducted. An exploratory survey was given to EAAT professionals to determine their views on the effects of EAAT programs on hope and depression in court-involved …

Gain-Of-Function Polymorphisms In Human Inflammasomes: Implications For Cystic Fibrosis, Duane Jeansonne, Samithamby Jeyaseelan

Faculty Publications

No abstract provided.

Meat Quality Traits And Blunt Meullenet-Owens Razor Shear Characteristics Of Broiler Breast Fillets Affected By Woody Breast Condition And Post-Cooking Meat Temperature, Xiao Sun, Aline Giampietro-Ganeco, Ashleigh Mueller, Clay J. Maynard, Juan P. Caldas-Cueva, Casey M. Owens

Poultry Science Faculty Publications and Presentations

This study aimed to investigate meat quality attributes, cooking performance, and water properties of woody breast (WB). A total of 48 broiler breast fillets (7 wk, 3 h debone) of 24 normal (NORM) and 24 severe WB (SEV) were collected. Raw meat characteristics (L*, a*, b*, pH, compression force and energy and) along with the blunt blade of the Meullenet-Owens razor shear (BMORS) properties were determined. Cooking time and internal meat temperature were recorded for each fillet every 5 min on each fillet during cooking. Water/moisture properties and shear values of BMORS …

Comprehensive Cultivation Of The Swine Gut Microbiome Reveals High Bacterial Diversity And Guides Bacterial Isolation In Pigs, Xiaofan Wang, Samantha Howe, Xiaoyuan Wei, Feilong Deng, Tsungcheng Tsai, Jianmin Chai, Yingping Xiao, Hua Yang, Charles V. Maxwell, Ying Li, Jiangchao Zhao

Animal Science Faculty Publications and Presentations

Despite the substantial progress made in human gut culturomics, little is known about the culturability of the swine gut microbiota. In this study, we cultured swine gut microbiota using 53 bacterial cultivation methods with different medium and gas combinations from three pigs at four different growth stages. Both culture-dependent (CD; colony mixtures from each method) and culture-independent (CI; original fecal suspensions) samples were subjected to 16S rRNA gene amplicon sequencing. Increasing microbial diversities were observed in both CI and CD samples from successive growth stages. While a total of 378, 482, 565, and 555 bacterial amplicon sequence variants (ASVs) were …

Ecological Correlates Of Alligator Snapping Turtle Bite Performance, Ashley Herrin Gagnon

Graduate Theses/Dissertations

The Alligator Snapping Turtle (Macrochelys temminckii) is one of many turtle species facing conservation challenges. Nearly extirpated in the 1980s, it is currently the subject of a head-start initiative, of which, any lasting behavioral or physiological effects were—until now—unknown! To evaluate the ability of captive-reared individuals to excel in natural habitats, and to foresee any future research or conservation challenges regarding this animal, I explored a suite of variables that influence bite performance and behaviors including captive or free-ranging status, and environmental conditions including body temperature and season. My results indicated that free-ranging M. temminckii outperform those residing …