Life Sciences Commons^™

Evaluating Brandt’S Cormorant (Phalacrocorax Penicillatus) Reproductive Success: Effects Of Parental Care Behaviors And Estimating Individual Chick Survival, Shannon Murphy

Cal Poly Humboldt theses and projects

Variation in reproductive success is widely measured in seabird biology in an effort to indicate changes in the marine environment, or understand basic questions about ecology or conservation of seabirds. When variation in seabird reproductive success is suggested to indicate changes in the marine environment without identifying the proximate causes of such variation, inference is limited to association, and the proximate causes themselves could prove more effective as indicators. My study informs this problem by examining and quantifying proximate causes of variation in reproductive success, at the level of nests and individual chicks.

I used video of Brandt’s Cormorant ( …

Juvenile Survival And Adult Return As A Function Of Freshwater Rearing Life History For Coho Salmon In The Klamath River Basin, Molly Gorman

Cal Poly Humboldt theses and projects

The Scott and Shasta rivers, Klamath River tributaries, experience spatial disparity in habitat quality in spring and summer as a result of historical and current land-use. Juvenile Coho Salmon (Oncorhynchus kisutch) born in the upper tributary reaches often rear in natal streams before migrating to sea. However, those born in the lower reaches often encounter unsuitable habitat and emigrate during their first spring to seek non-natal rearing habitats. It is assumed that these early outmigrants are population losses. This study evaluated first-summer survival, and contribution to the adult population, of non-natal rearing juveniles in the Klamath River Basin. …

Molt In Individuals: A Description Of Prealternate Molt Phenology In A Population Of Snowy Plovers In Humboldt County, California, Alexa Dejoannis

Cal Poly Humboldt theses and projects

Molt in birds is an essential physiological process. Intrinsic and extrinsic conditions, such as age, sex, location, or food stress, may cause individual variation in molt phenology. This study describes the timing of prealternate molt in western snowy plovers (Charadrius nivosus nivosus) wintering in Humboldt County, California, USA. Between July 2014 and April 2015, I photographed uniquely marked plovers twice a month and assigned dates of initiation and completion. I modeled sex, age, hatch date, and breeding location as predictors of molt phenology. I observed prealternate molt from October to April, which is earlier than previously described. Males …

Development Of A Novel In Vivo Corneal Fibrosis Model In The Dog, K. M. Gronkiewicz, Elizabeth A. Giuliano, K. Kuroki, F. Bunyak, Ajay Sharma, L. B. C. Teixeira, C. W. Hamm, R. R. Mohan

Pharmacy Faculty Articles and Research

The aim of this study was to develop a novel in vivo corneal model of fibrosis in dogs utilizing alkali burn and determine the ability of suberanilohydroxamic acid (SAHA) to inhibit corneal fibrosis using this large animal model. To accomplish this, we used seven research Beagle dogs. An axial corneal alkali burn in dogs was created using 1 N NaOH topically. Six dogs were randomly and equally assigned into 2 groups: A) vehicle (DMSO, 2 μL/mL); B) anti-fibrotic treatment (50 μM SAHA). The degree of corneal opacity, ocular health, and anti-fibrotic effects of SAHA were determined utilizing the Fantes grading …

Epigenetic Modification Prevents Excessive Wound Healing And Scar Formation After Glaucoma Filtration Surgery, Ajay Sharma, Govindaraj Anumanthan, Marcos Reyes, Huiyi Chen, Jason W. Brubaker, Saad Siddiqui, Suneel Gupta, Frank G. Rieger, Rajiv R. Mohan

Pharmacy Faculty Articles and Research

PURPOSE. The purpose of this study was to determine the efficacy of suberoylanilide hydroxamic acid (SAHA), a histone deacetylase inhibitor (HDACi), in prevention of excessive wound healing and scar formation in a rabbit model of glaucoma filtration surgery (GFS).

METHODS. A rabbit model of GFS was used. Rabbits that underwent GFS received balanced salt solution, or SAHA (50 lM), or mitomycin C (0.02%). Clinical scores of IOP, bleb vascularity, and slit-lamp examination were performed. On postoperative day 14, rabbits were killed and the bleb tissues were collected for evaluation of tissue fibrosis with hematoxylin and eosin, Masson trichrome, a-smooth muscle …

Predicting The Impact Of Future Climate On Ecologically Important Macroalgae, Charlie Phelps

Theses: Doctorates and Masters

Macroalgae play an important role in coastal reef systems and are often referred to as ecosystem engineers. They serve as primary producers, supporting a diverse range of organisms, and are a sink for atmospheric CO2. Water acidification and ocean warming caused by anthropogenic activities are affecting many marine flora and fauna, potentially impacting the physical and chemical performance of macroalgae and the consumption rates of associated herbivores. Many studies have focused on ocean acidification or ocean warming individually but there is an overall lack of research investigating the combined effects and the ensuing repercussions on consumer-prey relationships.

Three species of …

Status Of The U.S. Long-Term Ecological Research Network, Robert B. Wade, Long Term Ecological Research Network

Long Term Ecological Research Network

Contains a brief history and overview of the Long Term Ecological Research Network from 1983-2016.

Correlation Between Sleep And Lifespan In Drosophila Melanogaster, Courtney H. Fiebelman

Masters Theses

”Sleep has previously been associated with lifespan. Monitoring sleep in any given fly over their lifetime facilitates the ability to predict the lifespan of that given fly. Using this estimate, lifespan can potentially correlate with biological age to identify when health parameters have declined.

To confirm that the prediction algorithm could identify short and long-lived flies, glutathione levels in heads and bodies were compared between two groups. The results showed this to be consistent in the bodies of wild-type Canton S male flies, and showed that glutathione was decreased in the predicted biologically older flies. These data show that glutathione …

Transcriptional Regulation Of Dual-Specificity Phosphatase 4 (Dusp4) By Muscle Ring Finger 1 (Murf1) And Myogenic Regulatory Factors, Ashley Noel Haddock

UNF Graduate Theses and Dissertations

Skeletal muscle atrophy can occur at any age and as a result of numerous physiological conditions and thus, it was necessary to better identify the molecular underpinnings of the atrophy cascade so that new therapeutic targets to treat muscle wasting might be identified. MuRF1 was first identified as a marker of skeletal muscle atrophy over a decade ago; however, recent work suggests that this E3 ubiquitin ligase may participate in muscle wasting by regulating the transcriptional activity of genes differentially expressed in response to muscle atrophy. Dusp4, a dual-specificity phosphatase and member of the MAPK cascade, is induced in response …

Population Ecology Of Invasive Lionfish (Pterois Volitans/Miles) In The South Atlantic Bight, Mary Swenarton

UNF Graduate Theses and Dissertations

Invasive species are a top threat to global biodiversity. Lionfish (Pterois volitans/miles) are a marine invasive predator that are now established in the Western Atlantic, Caribbean Sea and Gulf of Mexico. Studies that have documented impacts of lionfish suggest they can reduce fish recruitment and native species biomass by up to 80%. Research on lionfish impacts, biology and ecology is heavily focused in tropical and subtropical systems, with considerably less research effort occurring in the temperate regions of their invaded range, such as the South Atlantic Bight. Lionfish life history estimates are important to modeling lionfish population growth, …

Structure And Function Of Male Bottlenose Dolphin Alliances In Northeast Florida, Kristin A. Karle

UNF Graduate Theses and Dissertations

Bottlenose dolphins exhibit fission-fusion social systems in which group size and composition change fluidly throughout the day. Societies are typically sexually segregated, and the quality and patterning of individual relationships in this social species shape the social structure of a population. Female dolphins usually have a large network of associates with whom they form recurring moderate bonds, while male associations are highly variable due to their mating strategies. Males employ one of two strategies; males may be solitary, and encounter and herd females individually, while others may form strong bonds with one to two other males and cooperatively herd individual …

Functional Characterization Of A Novel Disaccharide Membrane Transporter In The Digestive Tract Of The American Lobster, Homarus Americanus, Olivia Scheffler

UNF Graduate Theses and Dissertations

In animals, the accepted model of carbohydrate digestion and absorption involves reduction of disaccharides into the simple sugars glucose, fructose and galactose. Previous studies have shown the presence of disaccharides maltose and trehalose in the blood of several crab species, the crayfish and the American lobster. In 2011, a gene for a distinct disaccharide sucrose transporter (SCRT) was first found in Drosophila melanogaster and characterized using a yeast expression system. The purpose of the current study was to identify and characterize a putative disaccharide transporter analog in crustaceans using the American lobster, Homarus americanus. Brush border membrane vesicles purified …

Characterization Of The Interaction Between Basigin And The Pattern Recognition Receptor Tlr4, Josephine Michelle Brown

UNF Graduate Theses and Dissertations

Toll-like receptors (TLRs) are a major group of pattern recognition receptors expressed on the surface of immune cells that recognize molecular patterns associated with all classes of pathogenic microorganisms. TLR4 recognizes the lipopolysaccharide component of Gram-negative bacterial cell walls and is the only TLR known to induce signaling through both the MyD88 and TRIF pathways. Basigin, a ubiquitous cell adhesion molecule, is a member of the immunoglobulin superfamily that has the ability to influence cell signaling mediated by the MyD88 and TRIF pathways, the same signaling pathways induced by the TLR4 receptor protein. Analysis of the Basigin protein sequence indicates …

Homocysteine And Csrp-3 Protein In Migrating Neural Crest Cells: A Quantitative And Qualitative Confocal Microscopy Study, Allysan R. White

Dissertations and Theses @ UNI

Congenital heart defects are one of the leading causes of infant death. High maternal blood serum levels of the amino acid homocysteine and the frequency of heart defects are correlated, but the immediate cause is unknown. During early embryonic development, a distinctive population of cells arises dorsally as the neural tube closes, forming the brain and spinal cord. These are the neural crest cells, which play a crucial role in the development of the nervous system, head skeletal, certain endocrine and connective tissues, and, notably, the heart’s outflow region. These migratory cells will follow specific pathways and respond to signals …

Evaluation Of Social License For The Forest Products Industry In Houghton County, Michigan, Will Lytle

Dissertations, Master's Theses and Master's Reports

This research investigates how the local community grants social license to the forest products industry in Houghton County, Michigan. Interviews were conducted with industry and community stakeholders using a snowball sampling method to understand perspectives on the social license continuum. The viability of supply chains and individual industry sectors associated with forest resources in the county are largely governed by macroeconomics. However, there is a very local component that allows individual corporations to operate within the community. The data analysis, based on the interviews, focuses on understanding local perceptions of natural resource management and community relations. The results reflect social …

Effects Of Wildfire And Post-Fire Salvage Logging On Rill Networks And Sediment Delivery In California Forests, Will Olsen

Dissertations, Master's Theses and Master's Reports

Wildfires can increase soil erosion by orders of magnitude over rates in unburned forests and negatively impact aquatic resources. Rill erosion is a dominant erosion and sediment transport mechanism in burned forests, and hydrologically connected rills can form networks on burned hillslopes. At the swale scale (< 10,000 m²), little is known about how rill networks develop under different burn severities over time, their relationship with sediment yields, and the effect of post-fire salvage logging on rill networks and sediment yields.

The first study assessed rill networks and sediment yields in three burn severities in the inland Coast Range of …

Carbon Flux Dynamics In High Altitude Peatlands In The Ecuadorian Andes, Maria Elisa Sanchez Garces

Dissertations, Master's Theses and Master's Reports

Although knowledge of peatland CH₄ and CO₂ exchange in temperate mountain ecosystems is available, information about carbon (C) exchange in peatlands of the Andean mountains is limited and these ecosystems may behave differently given the particular characteristics of the Andean tropics. These ecosystems are highly productive and under pressure by grazing. Our first objective was to measure baseline carbon dioxide (CO₂) and methane (CH₄) flux in an undisturbed peatland in Cayambe-Coca National Park. Our second objective was to quantify CO₂ and CH₄ fluxes in an intensively cattle grazed peatland near Antisana Ecological …

Quantitative Trait Loci (Qtl) Analysis Of Sulfur Sensitivity In Vitis Aestivalis-Derived 'Norton', Logan Michael Duncan

Graduate Theses/Dissertations

The grape and wine industry relies heavily on sulfur and sulfur containing compounds to control the fungal disease powdery mildew (PM). Sulfur dioxide induces large-scale transcriptomic modification in the Eurasian grape species Vitis vinifera with little to no phytotoxicity. However, genetic factors contributing to sulfur sensitivity, characterized by vegetative necrosis and defoliation, remain undefined in North American grape species and their commercial hybrids. A mapping population, consisting of 147 F1 genotypes, was created by crossing V. aestivalis-derived ‘Norton’ and V. vinifera ‘Cabernet Sauvignon’ to identify the genetic basis for sulfur sensitivity in North American wine grapes. Clonally propagated F1 genotypes …

The Effectiveness Of Visits To Dickerson Park Zoo On Guests' Conservation Mindedness And Behavior, Sarah K. Foster

Graduate Theses/Dissertations

Today, there are more than 10,000 zoos worldwide that provide the public with opportunities to observe and learn about endangered and threatened species from ecosystems all over the world. Through direct and emotional interactions with wildlife at zoos, more than 600 million guests a year have a chance to evolve from spectators to participants of conservation. A mixed-method survey strategy took place at Dickerson Park Zoo in Springfield Missouri about the Species Survival Plan to understand guest’s conservation mindedness and behavior changes after a visit. Initial surveys were given in the zoo and the follow-up surveys were given online a …

Friends In Low Places: Responses Of A Benthic Stream Fish To Intra-Guild Alarm Cues, Kelsey Ann Anderson

Graduate Theses/Dissertations

Many aquatic species produce chemical alarm cues that serve as a warning to nearby conspecifics. In mixed-species aggregations, individuals may also benefit by “eavesdropping” on the chemical alarm cues of other species that are in the same prey-guild. Rainbow Darters (Etheostoma caeruleum) are benthic fish that co-occur with native Ozark Minnows (Notropis nubilus), recently-introduced Western Mosquitofish (Gambusia affinis), and native Oklahoma Salamanders (Eurycea tyrnerensis), all of whom are vulnerable to the same predators. We tested the responses of darters to the damage-released alarm cues of conspecifics (positive control), minnows, and mosquitofish; alarm cues from Bumblebee Gobies (Brachygobius doriae) served as …

Effectiveness Of The Qar Reading Strategy On Science Reading, Courtney Anne Broser

Graduate Theses/Dissertations

The Questions-Answer Relationship (QAR) is a reading strategy that guides student comprehension by allowing the student to demonstrate their ability to determine importance, make inferences, and monitor comprehension through questions. The study was conducted on high school students in physical science to determine if the implementation of the QAR would improve content area literacy knowledge and confidence from pre-test and post-test data. Pedagogies included modeling, collaboration, independent work, guided practice, direct instruction, and inquiry laboratories. Through the implementation of the QAR method, the researcher found that students that learned new reading strategies gained confidence and were more engaged in the …

Natural History And Conservation Of Bolitoglossine Salamanders In Central Panama, Leslie Caren Brinkman

Graduate Theses/Dissertations

I conducted a mark-recapture study to assess the natural history of a Neotropical salamander community in three discrete 4–6 week sampling periods at Chorro Las Yayas, a protected natural area of about 8000 m2 in central Panama, during an extended drought. I captured 87 Bolitoglossa biseriata, 17 Oedipina complex, and 15 O. parvipes. Bolitoglossa biseriata, had a mean mass of 0.8 ± 0.4 g with a mean snout-vent length (SVL) of 31.45 ± 5.30 mm. Bolitoglossa biseriata was active throughout the night, and its detection rate varied with season, air temperature, and amount of precipitation in the previous 24 h. …

Behavioral Responses By Cottonmouths (Agkistrodon Piscivorus) To Chemical And Visual Predator Cues, Kristen Lee Kohlhepp

Graduate Theses/Dissertations

Predator detection and assessment of predation risk have important survival consequences for animals. However, responses to predatory threats can vary with different stimuli. Chemical cues are important for predator recognition but visual cues may elicit defensive responses. Cottonmouths (Agkistrodon piscivorus) exhibit an array of antipredatory behaviors that have been thoroughly characterized in response to human aggressors, but their responses to cues from other predators are poorly known. I conducted three experiments to evaluate cottonmouth responses to visual and chemical stimuli from predators and non-predators. Snakes exposed to predator chemical cues exhibited elevated tongue-flick rates compared to controls but did not …

Size-Selective Predation By Ringed Crayfish (Orconectes Neglectus) On Native And Invasive Snails, Whitney Marie Kelley

Graduate Theses/Dissertations

As invasive species are introduced into new habitats, predator-prey interactions can be altered. Cipangopaludina chinensis is a large snail that has been introduced into numerous waterbodies throughout the United States, where it coexists with native snails and their crayfish consumers. This study examined the relative susceptibility of C. chinensis and two native snails (Elimia potosiensis and Physella gyrina) to predation by the ringed crayfish (Orconectes neglectus). I conducted field surveys of snails and crayfish in three Ozark streams, plus a series of four lab experiments to determine feeding rates and prey preference by O. neglectus on these three snail species. …

Trophic Interactions And The Efficacy Of Milfoil Weevils For Biocontrol Of Eurasian Watermilfoil In Wisconsin Lakes, Kristopher Andrew Maxson

Graduate Theses/Dissertations

Eurasian water-milfoil (Myriophyllum spicatum L., henceforth “EWM”) is the most heavily managed nuisance submersed aquatic plant in the United States. EWM’s rapid spring growth and formation of dense surface mats inhibits native macrophyte communities, serves as poor-quality habitat for fish and macroinvertebrates, impacts recreation, and can clog water supply infrastructure. The milfoil weevil (Euhrychiopsis lecontei Dietz) has been associated with EWM declines in several states, though natural weevil densities are generally too small to effect control. Augmentative biocontrol has had varied success and fish predation may account for high weevil mortality. Weevils were augmented in 4 northern Wisconsin lakes in …

Arbuscular Mycorrhizal Fungi Of Northern White Cedar (Thuja Occidentalis L.): Habitat Effects On Fungal Communities And Inoculum Effects On Plant Growth On Acid Peat Soils, Guswarni Anwar

Dissertations, Master's Theses and Master's Reports

The relationship of arbuscular mycorrhizal (AM) fungi with northern white cedar (NWC) was examined from the perspective of both fundamental questions about habitat specificity in the root fungal community, as well as applied questions regarding AM fungal efficacy in NWC restoration in peat soils. I performed two experiments testing the effects of AM fungi on survival, growth, and nutrition of NWC seedlings; and one molecular study to determine the habitat effects on community composition of NWC root-associated fungi. First, a greenhouse AM inoculation experiment was conducted in factorial combination with fertilization and liming to examine conditional effectiveness of AM fungal …

The Effect Of Posttranslational Modifications On Protein Aggregation, Morphology, And Toxicity, Mu Yang

Dissertations, Master's Theses and Master's Reports

Proteins are one of the most versatile macromolecules in the biological system. The function or activity of a protein highly depends on its 3D native structure. However, under stress, they are at risk of misfolding/aggregation, leading to formation of structures that can indicate loss of function or gain of toxicity. In severe cases, protein aggregation can result in many diseases, including neurodegenerative diseases, such as Alzheimer’s, Parkinson’s, Huntington’s, and amyotrophic lateral sclerosis. Due to the heterogeneous nature of cellular environment and protein molecules, mechanism of in vivo folding and related toxicity still remains elusive. To have a better understanding of …

Effect Of Disulfide Bond Scrambling On Protein Stability, Aggregation, And Cytotoxicity, Colina Dutta

Dissertations, Master's Theses and Master's Reports

Proteins are nano-machines that carry out majority of the cellular functions. Thermodynamically they are functional and stable within a very narrow range (1 kcal/mol). External perturbations in the form of pH change, thermal, or oxidative/reducing stress can destabilize the protein resulting in misfolding and aggregation. Prolonged environmental stress can affect the cells adaptive response resulting in loss of ability to refold or recycle proteins. This can lead to accumulation of misfolded or aggregated proteins within the cell. Such accumulation of aggregated proteins have been associated with neurodegenerative disorders such as Amyotrophic Lateral Sclerosis (ALS), Parkinson’s, Huntington’s, and Alzheimer’s disease. There …

Sensing And Mapping Of Surface Hydrophobicity Of Proteins By Fluorescent Probes, Nethaniah Dorh

Dissertations, Master's Theses and Master's Reports

Surface hydrophobic interactions in proteins play a critical role in molecular recognition, influence biological functions, and play a central role in many protein misfolding diseases. As significance of surface hydrophobic interactions in age-related proteinopathies is becoming clear; it has led to an increased demand for better probes and tools to sense and characterize protein surface hydrophobicity. Current commercially available fluorescent probes such as 8-anilino-1-naphthalene sulfonic acid (ANS), 4,4′ -dianilino-1,1′-binaphthyl-5,5′-disulfonic acid (Bis-ANS), 6-propionyl-2-(N,N-dimethylamino)naphthalene (PRODAN), tetraphenylethene derivative, and Nile Red can sense proteins average hydrophobicity. However, probe limitations prevents their application for measuring the protein surface hydrophobicity. Some of the major deficiencies …

Assessing The Impacts Of Climate Change On The Surface Temperature Of Inland Lakes In Michigan, Kaitlin Reinl

Dissertations, Master's Theses and Master's Reports

The aim of this study was to validate and apply a lake model for predicting the susceptibility of small inland lakes in Michigan to changes in thermal regime and increased cyanobacteria growth as a result of future climate conditions. The Freshwater Lake Model was selected, tested for sensitivity to various inputs, and validated through comparison to observed conditions. The sensitivity analysis showed that the lake model was most sensitive to solar radiation, air temperature, and air humidity. Comparison of predicted climate data with observed conditions revealed highly variable climate model error. The lake model validation was conducted using 10 lakes …