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Biological Systems Engineering: Papers and Publications

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Full-Text Articles in Environmental Engineering

Evaluating Management Zones And Crop-Sensing Relationships For Improved Irrigated Maize Nitrogen Management, Joel D. Crowther, John Parrish, Joe Luck, Richard Ferguson Jan 2023

Evaluating Management Zones And Crop-Sensing Relationships For Improved Irrigated Maize Nitrogen Management, Joel D. Crowther, John Parrish, Joe Luck, Richard Ferguson

Biological Systems Engineering: Papers and Publications

Active crop canopy sensors and management zones (MZ) are two methods of directing variable-rate, in-season nitrogen (N) fertilizer applications in maize (Zea mays L.). Researchers have suggested that integrating these two approaches may result in improved performance of sensor-based N application algorithms through increased N use efficiency and profitability. The objectives of this research study were to (1) identify soil and topographic variables that are related to in-season canopy reflectance and yield for soil-based MZ delineation and (2) determine if delineated MZ can identify areas with differential crop response to N fertilizer. N ramp blocks were placed end-to-end in field-length …


A Methodology To Optimize Site-Specific Field Capacity And Irrigation Thresholds, Hemendra Kumar, Puneet Srivastava, Jasmeet Lamba, Bruno Lena, Efstathios Diamantopoulos, Brenda Ortiz, Bijoychandra Takhellambam, Guilherme Morata, Luca Bondesan Jan 2023

A Methodology To Optimize Site-Specific Field Capacity And Irrigation Thresholds, Hemendra Kumar, Puneet Srivastava, Jasmeet Lamba, Bruno Lena, Efstathios Diamantopoulos, Brenda Ortiz, Bijoychandra Takhellambam, Guilherme Morata, Luca Bondesan

Biological Systems Engineering: Papers and Publications

The determination of field capacity (FC), irrigation thresholds, and irrigation amounts is characterized by site-specific soil hydraulic properties (SHPs). This study, conducted in two zones (zone 1 and zone 2) delineated based on soil, topography, and historical crop yield in Alabama (USA), focused on determining zone-specific FC using negligible drainage flux (qfc) criterion. The HYDRUS-1D model was used to optimize zone-specific SHPs using measured soil matric potential (h). The zone-specific FCs were determined using optimized and raw SHPs at 0.01 cm/day as qfc. The results showed that the optimized FC at qfc …


The Combined Impact Of Redcedar Encroachment And Climate Change On Water Resources In The Nebraska Sand Hills, Yaser Kishawi, Aaron R. Mittelstet, Zablon Adane, Nawaraj Shrestha, Paolo Nasta Dec 2022

The Combined Impact Of Redcedar Encroachment And Climate Change On Water Resources In The Nebraska Sand Hills, Yaser Kishawi, Aaron R. Mittelstet, Zablon Adane, Nawaraj Shrestha, Paolo Nasta

Biological Systems Engineering: Papers and Publications

The Nebraska Sand Hills (NSH) is considered a major recharge zone for the High Plains Aquifer in the central United States. The uncontrolled expansion of the eastern redcedar (Juniperus Virginiana) under climate warming is posing threats to surface water and groundwater resources. The combined impact of land use and climate change on the water balance in the Upper Middle Loup River watershed (4,954 km2) in the NSH was evaluated by simulating different combination of model scenarios using the Soil Water Assessment Tool (SWAT) model. A total of 222 climate models were ranked according to the aridity …


Estimation Of Cotton Canopy Parameters Based On Unmanned Aerial Vehicle (Uav) Oblique Photography, Jinyong Wu, Sheng Wen, Yubin Lan, Xuanchun Yin, Jiantao Zhang, Yufeng Ge Dec 2022

Estimation Of Cotton Canopy Parameters Based On Unmanned Aerial Vehicle (Uav) Oblique Photography, Jinyong Wu, Sheng Wen, Yubin Lan, Xuanchun Yin, Jiantao Zhang, Yufeng Ge

Biological Systems Engineering: Papers and Publications

Background: The technology of cotton defoliation is essential for mechanical cotton harvesting. Agricultural unmanned aerial vehicle (UAV) spraying has the advantages of low cost, high efficiency and no mechanical damage to cotton and has been favored and widely used by cotton planters in China. However, there are also some problems of low cotton defoliation rates and high impurity rates caused by unclear spraying amounts of cotton defoliants. The chemical rate recommendation and application should be based upon crop canopy volume rather than on land area. Plant height and leaf area index (LAI) is directly connected to plant canopy structure. …


Comparative Study Of Differentiating Human Pluripotent Stem Cells Into Vascular Smooth Muscle Cells In Hydrogel-Based Culture Methods, Qing Liu, Zhen Liu, Hongyu Gu, Yuxia Ge, Xuesheng Wu, Fuxing Zuo, Qian Du, Yuguo Lei, Zhanqi Wang, Haishuang Lin Dec 2022

Comparative Study Of Differentiating Human Pluripotent Stem Cells Into Vascular Smooth Muscle Cells In Hydrogel-Based Culture Methods, Qing Liu, Zhen Liu, Hongyu Gu, Yuxia Ge, Xuesheng Wu, Fuxing Zuo, Qian Du, Yuguo Lei, Zhanqi Wang, Haishuang Lin

Biological Systems Engineering: Papers and Publications

Vascular smooth muscle cells (VSMCs), which provides structural integrity and regulates the diameter of vasculature, are of great potential for modeling vascular-associated diseases and tissue engineering. Here, we presented a detailed comparison of differentiating human pluripotent stem cells (hPSCs) into VSMCs (hPSCs-VSMCs) in four different culture methods, including 2-dimensional (2D) culture, 3-dimensional (3D) PNIPAAm-PEG hydrogel culture, 3-dimensional (3D) alginate hydrogel culture, and transferring 3- dimensional alginate hydrogel culture to 2-dimensional (2D) culture. Both hydrogel-based culture methods could mimic in vivo microenvironment to protect cells from shear force, and avoid cells agglomeration, resulting in the extremely high culture efficiency (e.g., high …


Mango Surface Color Features Measurement Using Digital Image Processing, Md Towfiqur Rahman, Goutom Kumar, Md Abdul Momin Dec 2022

Mango Surface Color Features Measurement Using Digital Image Processing, Md Towfiqur Rahman, Goutom Kumar, Md Abdul Momin

Biological Systems Engineering: Papers and Publications

Summary

Postharvest processing of agricultural produce is still done the conventional way in Bangladesh. Manual grading of agricultural produce, especially fruits and vegetables, is laborious and costly due to acute shortage of labor during the peak season, as well as difficulty maintaining the product quality. Machine vision system (MVS) applications are widely used nowadays as a non-destructive and cost-effective technology for automatically grading and sorting large volumes of produce in the packing house according to size, shape, color, texture, and surface defects. In this study, a simple MVS was constructed measuring different color features of mango fruit surface as a …


Application Of Uas‑Based Remote Sensing In Estimating Winter Wheat Phenotypic Traits And Yield During The Growing Season, Kianoosh Hassani, Hamed Gholizadeh, Saleh Taghvaeian, Victoria Natalie, Jonathan Carpenter, Jamey Jacob Nov 2022

Application Of Uas‑Based Remote Sensing In Estimating Winter Wheat Phenotypic Traits And Yield During The Growing Season, Kianoosh Hassani, Hamed Gholizadeh, Saleh Taghvaeian, Victoria Natalie, Jonathan Carpenter, Jamey Jacob

Biological Systems Engineering: Papers and Publications

Phenotyping approaches have been considered as a vital component in crop breeding programs to improve crops and develop new high-yielding cultivars. However, traditional field-based monitoring methods are expensive, invasive, and time-intensive. Moreover, data collected using satellite and airborne platforms are either costly or limited by their spatial and temporal resolution. Here, we investigated whether low-cost unmanned/unoccupied aerial systems (UASs) data can be used to estimate winter wheat (Triticum aestivum L.) nitrogen (N) content, structural traits including plant height, fresh and dry biomass, and leaf area index (LAI) as well as yield during different winter wheat growing stages. To achieve …


Canopycam – An Edge-Computing Sensing Unit For Continuous Measurement Of Canopy Cover Percentage Of Dry Edible Beans, Wei-Zhen Liang, Joseph Oboamah, Xin Qiao, Yufeng Ge, Robert M. Harveson, Daran Rudnick, Jun Wang, Haishun Yang, Angie Gradiz Nov 2022

Canopycam – An Edge-Computing Sensing Unit For Continuous Measurement Of Canopy Cover Percentage Of Dry Edible Beans, Wei-Zhen Liang, Joseph Oboamah, Xin Qiao, Yufeng Ge, Robert M. Harveson, Daran Rudnick, Jun Wang, Haishun Yang, Angie Gradiz

Biological Systems Engineering: Papers and Publications

Canopy cover (CC) is an important indicator for crop development. Currently, CC can be estimated indirectly by measuring leaf area index (LAI) using commercially available hand-held meters. However, it does not capture the dynamics of CC. Continuous CC monitoring is essential for dry edible beans production since it can affect crop water use, weed, and disease control. It also helps growers to closely monitor “yellowness”, or senescence of dry beans to decide proper irrigation cutoff timing to allow the crop to dry down for harvest. Therefore, the goal of this study was to develop a device – CanopyCAM, containing software …


Spatiotemporal Metabolic Network Models Reveal Complex Autotroph-Heterotroph Biofilm Interactions Governed By Photon Incidences, Poonam Phalak, Hans C. Bernstein, Stephen R. Lindemann, Ryan S. Renslow, Dennis G. Thomas, Michael A. Henson, Hyun-Seob Song Nov 2022

Spatiotemporal Metabolic Network Models Reveal Complex Autotroph-Heterotroph Biofilm Interactions Governed By Photon Incidences, Poonam Phalak, Hans C. Bernstein, Stephen R. Lindemann, Ryan S. Renslow, Dennis G. Thomas, Michael A. Henson, Hyun-Seob Song

Biological Systems Engineering: Papers and Publications

Autotroph-heterotroph interactions are ubiquitous in natural environment and play a key role in controlling various essential ecosystem functions, such as production and utilization of organic matter, cycling of nitrogen, sulfur, and other chemical elements. Understanding how these biofilm metabolic interactions are constrained in space and time remains challenging because fully predictive models designed for this purpose are currently limited. Toward filling this gap, here we developed community metabolic network models for two autotroph-heterotroph biofilm consortia (termed UCC-A and UCC-O), which share a suite of common heterotrophic members but have a single distinct photoautotrophic cyanobacterium (Phormidesmis priestleyi str. ANA and …


Dynamics Of Crop Evapotranspiration Of Four Major Crops On A Large Commercial Farm: Case Of The Navajo Agricultural Products Industry, New Mexico, Usa, Koffi Djaman, Komlan Koudahe, Ali T. Mohammed Oct 2022

Dynamics Of Crop Evapotranspiration Of Four Major Crops On A Large Commercial Farm: Case Of The Navajo Agricultural Products Industry, New Mexico, Usa, Koffi Djaman, Komlan Koudahe, Ali T. Mohammed

Biological Systems Engineering: Papers and Publications

Crop evapotranspiration (ETa) is the main source of water loss in farms and watersheds, and with its effects felt at a regional scale, it calls for irrigation professionals and water resource managers to accurately assess water requirements to meet crop water use. On a multi-crop commercial farm, different factors affect cropland allocation, among which crop evapotranspiration is one of the most important factors regarding the seasonally or annually available water resources for irrigation in combination with the in-season effective precipitation. The objective of the present study was to estimate crop evapotranspiration for four major crops grown on the Navajo Agricultural …


Strategic Planning For Exchanging Treated Urban Wastewater For Agricultural Water With The Approach Of Supplying Sustainable Urban Water: A Case Study Of Mashhad, Iran, Sasan Esfandiari, Arash Dourandish, Ali Firoozzare, Saleh Taghvaeian Oct 2022

Strategic Planning For Exchanging Treated Urban Wastewater For Agricultural Water With The Approach Of Supplying Sustainable Urban Water: A Case Study Of Mashhad, Iran, Sasan Esfandiari, Arash Dourandish, Ali Firoozzare, Saleh Taghvaeian

Biological Systems Engineering: Papers and Publications

Considering the increasing demand for urban water and the low water-use efficiency in the agricultural sector, an exchange of treated urban wastewater for agricultural water could be a fundamental solution for administering sustainable management of water resources. However, implementing the intersectoral water exchange project is influenced by the economic, social, and environmental conditions of each region, especially in developing countries. Therefore, this study sought to identify the best possible strategies for exchanging treated urban wastewater for agricultural water in Mashhad city, located in Iran, a country that suffers from decreased urban water resources. Based on the interviews conducted with the …


Interaction Networks Are Driven By Community-Responsive Phenotypes In A Chitin-Degrading Consortium Of Soil Microbes, Ryan Mcclure, Yuuliya Farris, Robert Danczak, William Nelson, Hyun-Seob Song, Aimee Kessell, Joon-Yong Lee, Sneha Couvillion, Christopher Henry, Janet K. Jansson, Kristen S. Hofmockel Sep 2022

Interaction Networks Are Driven By Community-Responsive Phenotypes In A Chitin-Degrading Consortium Of Soil Microbes, Ryan Mcclure, Yuuliya Farris, Robert Danczak, William Nelson, Hyun-Seob Song, Aimee Kessell, Joon-Yong Lee, Sneha Couvillion, Christopher Henry, Janet K. Jansson, Kristen S. Hofmockel

Biological Systems Engineering: Papers and Publications

Soil microorganisms provide key ecological functions that often rely on metabolic interactions between individual populations of the soil microbiome. To better understand these interactions and community processes, we used chitin, a major carbon and nitrogen source in soil, as a test substrate to investigate microbial interactions during its decomposition. Chitin was applied to a model soil consortium that we developed, “model soil consortium-2” (MSC-2), consisting of eight members of diverse phyla and including both chitin degraders and nondegraders. A multiomics approach revealed how MSC-2 community-level processes during chitin decomposition differ from monocultures of the constituent species. Emergent properties of both …


Interaction Networks Are Driven By Community-Responsive Phenotypes In A Chitin-Degrading Consortium Of Soil Microbes, Ryan Mcclure, Yuliya Farris, Robert Danczak, William Nelson, Hyun-Seob Song, Aimee Kessell, Sneha Couvillion, Christopher Henry, Janet K. Jansson, Kristen S. Hofmockel Sep 2022

Interaction Networks Are Driven By Community-Responsive Phenotypes In A Chitin-Degrading Consortium Of Soil Microbes, Ryan Mcclure, Yuliya Farris, Robert Danczak, William Nelson, Hyun-Seob Song, Aimee Kessell, Sneha Couvillion, Christopher Henry, Janet K. Jansson, Kristen S. Hofmockel

Biological Systems Engineering: Papers and Publications

Soil microorganisms provide key ecological functions that often rely on metabolic interactions between individual populations of the soil microbiome. To better understand these interactions and community processes, we used chitin, a major carbon and nitrogen source in soil, as a test substrate to investigate microbial interactions during its decomposition. Chitin was applied to a model soil consortium that we developed, “model soil consortium-2” (MSC-2), consisting of eight members of diverse phyla and including both chitin degraders and nondegraders. A multiomics approach revealed how MSC-2 community-level processes during chitin decomposition differ from monocultures of the constituent species. Emergent properties of both …


Electrochemical Biosensing And Deep Learning-Based Approaches In The Diagnosis Of Covid-19: A Review, Omer Sadak, Ferhat Sadak, Ozal Yildirim, Nicole M. Iverson, Rizwan Qureshi, Muhammed Talo, Chui Ping Ooi, U. Rajendra Acharya, Sundaram Gunasekaran, Tanvir Alam Sep 2022

Electrochemical Biosensing And Deep Learning-Based Approaches In The Diagnosis Of Covid-19: A Review, Omer Sadak, Ferhat Sadak, Ozal Yildirim, Nicole M. Iverson, Rizwan Qureshi, Muhammed Talo, Chui Ping Ooi, U. Rajendra Acharya, Sundaram Gunasekaran, Tanvir Alam

Biological Systems Engineering: Papers and Publications

COVID-19 caused by the transmission of SARS-CoV-2 virus taking a huge toll on global health and caused life-threatening medical complications and elevated mortality rates, especially among older adults and people with existing morbidity. Current evidence suggests that the virus spreads primarily through respiratory droplets emitted by infected persons when breathing, coughing, sneezing, or speaking. These droplets can reach another person through their mouth, nose, or eyes, resulting in infection. The "gold standard'' for clinical diagnosis of SARS-CoV-2 is the laboratory-based nucleic acid amplification test, which includes the reverse transcription-polymerase chain reaction (RT-PCR) test on nasopharyngeal swab samples. The main concerns …


Crop Response To Thermal Stress Without Yield Loss In Irrigated Maize And Soybean In Nebraska, Sandeep Bhatti, Derek M. Heeren, Steven R. Evett, Susan A. O'Shaughnessy, Daran Rudnick, Trenton E. Franz, Yufeng Ge, Christopher M.U. Neale Sep 2022

Crop Response To Thermal Stress Without Yield Loss In Irrigated Maize And Soybean In Nebraska, Sandeep Bhatti, Derek M. Heeren, Steven R. Evett, Susan A. O'Shaughnessy, Daran Rudnick, Trenton E. Franz, Yufeng Ge, Christopher M.U. Neale

Biological Systems Engineering: Papers and Publications

Thermal sensing provides rapid and accurate estimation of crop water stress through canopy temperature data. Canopy temperature is highly dependent on the transpiration rate of the leaves. It is usually assumed that any reduction in crop evapotranspiration (ET) leads to crop yield loss. As a result, an increase in canopy temperature due to a decrease in crop ET would indicate crop yield loss. This research evaluated the hypothesis that crop water stress could be detected using canopy temperature measurements (increased leaf temperature) from infrared thermometers (IRTs) before incurring crop yield loss. This would be possible in a narrow range when …


Real-Time Irrigation Scheduling Of Maize Using Degrees Above Non-Stressed (Dans) Index In Semi-Arid Environment, Hope Njuki Nakabuye, Daran Rudnick, Kendall C. Dejonge, Tsz Him Lo, Derek M. Heeren, Xin Qiao, Trenton E. Franz, Abia Katimbo, Jiaming Duan Sep 2022

Real-Time Irrigation Scheduling Of Maize Using Degrees Above Non-Stressed (Dans) Index In Semi-Arid Environment, Hope Njuki Nakabuye, Daran Rudnick, Kendall C. Dejonge, Tsz Him Lo, Derek M. Heeren, Xin Qiao, Trenton E. Franz, Abia Katimbo, Jiaming Duan

Biological Systems Engineering: Papers and Publications

Irrigation scheduling methods have been used to determine the timing and amount of water applied to crops. Scheduling techniques can include measurement of soil water content, quantification of crop water use, and monitoring of crop physiological response to water stress. The aim of this study was to evaluate the performance of a simplified crop canopy temperature measurement (CTM) method as Irrigation Principles. Soil and Water Conservation Engineera technique to schedule irrigation for maize. Specifically, the Degrees Above Non-Stressed (DANS) index, which suggests water stress when canopy temperature exceeds the non-stressed canopy temperature (Tcns), was determined by estimating T …


Modeling Actual Evapotranspiration With Msi-Sentinel Images And Machine Learning Algorithms, Robson Argolo Dos Santos, Everardo Chartuni Mantovani, Elpídio Inácio Fernandes-Filho, Roberto Filgueiras, Rodrigo Dal Sasso Lourenço, Vinícius Bof Bufon, Christopher M. U. Neale Sep 2022

Modeling Actual Evapotranspiration With Msi-Sentinel Images And Machine Learning Algorithms, Robson Argolo Dos Santos, Everardo Chartuni Mantovani, Elpídio Inácio Fernandes-Filho, Roberto Filgueiras, Rodrigo Dal Sasso Lourenço, Vinícius Bof Bufon, Christopher M. U. Neale

Biological Systems Engineering: Papers and Publications

The modernization of computational resources and application of artificial intelligence algorithms have led to advancements in studies regarding the evapotranspiration of crops by remote sensing. Therefore, this research proposed the application of machine learning algorithms to estimate the ETrF (Evapotranspiration Fraction) of sugar can crop using the METRIC (Mapping Evapotranspiration at High Resolution with Internalized Calibration) model with data from the Sentinel-2 satellites constellation. In order to achieve this goal, images from the MSI sensor (MultiSpectral Instrument) from the Sentinel-2 and the OLI (Operational Land Imager) and TIRS (Thermal Infrared Sensor) sensors from the Landsat-8 were acquired nearly …


Ag-Iot For Crop And Environment Monitoring: Past, Present, And Future, Nipuna Chamara, Md Didarul Islam, Geng Bai, Yeyin Shi, Yufeng Ge Sep 2022

Ag-Iot For Crop And Environment Monitoring: Past, Present, And Future, Nipuna Chamara, Md Didarul Islam, Geng Bai, Yeyin Shi, Yufeng Ge

Biological Systems Engineering: Papers and Publications

CONTEXT: Automated monitoring of the soil-plant-atmospheric continuum at a high spatiotemporal resolution is a key to transform the labor-intensive, experience-based decision making to an automatic, data-driven approach in agricultural production. Growers could make better management decisions by leveraging the real-time field data while researchers could utilize these data to answer key scientific questions. Traditionally, data collection in agricultural fields, which largely relies on human labor, can only generate limited numbers of data points with low resolution and accuracy. During the last two decades, crop monitoring has drastically evolved with the advancement of modern sensing technologies. Most importantly, the introduction …


Climate And Genetic Data Enhancement Using Deep Learning Analytics To Improve Maize Yield Predictability, Parisa Sarzaeim, Francisco Muñoz-Arriola, Diego Jarquin Sep 2022

Climate And Genetic Data Enhancement Using Deep Learning Analytics To Improve Maize Yield Predictability, Parisa Sarzaeim, Francisco Muñoz-Arriola, Diego Jarquin

Biological Systems Engineering: Papers and Publications

Despite efforts to collect genomics and phenomics (“omics”) and environmental data, spatiotemporal availability and access to digital resources still limit our ability to predict plants’ response to changes in climate. Our goal is to quantify the improvement in the predictability of maize yields by enhancing climate data. Large-scale experiments such as the Genomes to Fields (G2F) are an opportunity to provide access to “omics” and climate data. Here, the objectives are to: (i) improve the G2F “omics” and environmental database by reducing the gaps of climate data using deep neural networks; (ii) estimate the contribution of climate and genetic database …


Neonicotinoid Pesticide And Nitrate Mixture Removal And Persistence In Floating Treatment Wetlands, Julia K. Lindgren, Tiffany L. Messer, Daniel N. Miller, Daniel D. Snow, Thomas G. Franti Aug 2022

Neonicotinoid Pesticide And Nitrate Mixture Removal And Persistence In Floating Treatment Wetlands, Julia K. Lindgren, Tiffany L. Messer, Daniel N. Miller, Daniel D. Snow, Thomas G. Franti

Biological Systems Engineering: Papers and Publications

Mesocosm and microcosm experiments were conducted to explore the applicability of floating treatment wetlands (FTWs), an ecologically based management technology, to remove neonicotinoid insecticides and nitrate from surface water. The mesocosm experiment evaluated three treatments in triplicate over a 21-d period. Floating treatment wetland mesocosms completely removed nitrate-N over the course of the experiment even when neonicotinoid insecticides were present. At the completion of the experiment, 79.6% of imidacloprid and degradation byproducts and 68.3% of thiamethoxam and degradation byproducts were accounted for in the water column. Approximately 3% of imidacloprid and degradation byproducts and 5.0% of thiamethoxam and degradation byproducts …


Permafrost Landscape History Shapes Fluvial Chemistry, Ecosystem Carbon Balance, And Potential Trajectories Of Future Change, Scott Zolkos, Suzanne E. Tank, Steven V. Kokelj, Robert G. Striegl, Sarah Shakil, Carolina Voigt, Oliver Sonnentag, William L. Quinton, Edward A. G. Schuur, Donatella Zona, Peter M. Lafleur, Ryan C. Sullivan, Masahito Ueyama, David P. Billesbach, David Cook, Elyn R. Humphreys, Philip Marsh Aug 2022

Permafrost Landscape History Shapes Fluvial Chemistry, Ecosystem Carbon Balance, And Potential Trajectories Of Future Change, Scott Zolkos, Suzanne E. Tank, Steven V. Kokelj, Robert G. Striegl, Sarah Shakil, Carolina Voigt, Oliver Sonnentag, William L. Quinton, Edward A. G. Schuur, Donatella Zona, Peter M. Lafleur, Ryan C. Sullivan, Masahito Ueyama, David P. Billesbach, David Cook, Elyn R. Humphreys, Philip Marsh

Biological Systems Engineering: Papers and Publications

Intensifying permafrost thaw alters carbon cycling by mobilizing large amounts of terrestrial substrate into aquatic ecosystems. Yet, few studies have measured aquatic carbon fluxes and constrained drivers of ecosystem carbon balance across heterogeneous Arctic landscapes. Here, we characterized hydrochemical and landscape controls on fluvial carbon cycling, quantified fluvial carbon fluxes, and estimated fluvial contributions to ecosystem carbon balance across 33 watersheds in four ecoregions in the continuous permafrost zone of the western Canadian Arctic: unglaciated uplands, ice-rich moraine, and organic-rich lowlands and till plains. Major ions, stable isotopes, and carbon speciation and fluxes revealed patterns in carbon cycling across ecoregions …


Development An Edge-Computing Sensing Unit For Continuous Measurement Of Canopy Cover Percentage Of Dry Edible Beans, Wei-Zhen Liang, Joseph Oboamah, Xin Qiao, Yufeng Ge, Robert M. Harveson, Daran R. Rudnick, Jun Wang, Haishun Yang, Angie Gradiz Jul 2022

Development An Edge-Computing Sensing Unit For Continuous Measurement Of Canopy Cover Percentage Of Dry Edible Beans, Wei-Zhen Liang, Joseph Oboamah, Xin Qiao, Yufeng Ge, Robert M. Harveson, Daran R. Rudnick, Jun Wang, Haishun Yang, Angie Gradiz

Biological Systems Engineering: Papers and Publications

Canopy cover (CC) is an important indicator for crop development. Currently, CC can be estimated indirectly by measuring leaf area index (LAI), using commercially available hand-held meters. However, it does not capture the dynamics of CC. Continuous CC monitoring is essential for dry edible beans production since it can affect crop water use, weed, and disease control. It also helps growers to closely monitor “yellowness”, or senescence of dry beans to decide proper irrigation cutoff to allow the crop to dry down for harvest. The goal of this study was to develop a device – CanopyCAM, containing software and hardware …


Effect Of Bromoform And Linseed Oil On Greenhouse Gas Emissions From Stored Beef Manure, Andrew Ortiz Balsero, Mara Zelt, Amy Millmier Schmidt, Miguel Fudolig, Daniel N. Miller Jul 2022

Effect Of Bromoform And Linseed Oil On Greenhouse Gas Emissions From Stored Beef Manure, Andrew Ortiz Balsero, Mara Zelt, Amy Millmier Schmidt, Miguel Fudolig, Daniel N. Miller

Biological Systems Engineering: Papers and Publications

Emissions of carbon dioxide, methane, and nitrous oxide – potent greenhouse gases - from stored beef feedlot manure are a significant concern relative to climate change. Research on methane reduction strategies for enteric emissions has identified the application of organic additives, such as bromoform and linseed oil, to ruminant diets as potential solutions for reducing enteric emissions and pathogenic bacteria in excreted manure. The objective of this study was to determine the effect of bromoform and linseed oil on greenhouse gas emissions from beef feedlot manure, and on E. coli concentration in beef cattle manure, during a 5-week storage period. …


Axial Hypersensitivity Is Associated With Aberrant Nerve Sprouting In A Novel Model Of Disc Degeneration In Female Sprague Dawley Rats, David J. Lillyman, Fei San Lee, Evie C. Barnett, Tyler J. Miller, Moreno Lozano Alvaro, Henry C. Drvol, Rebecca A. Wachs Jun 2022

Axial Hypersensitivity Is Associated With Aberrant Nerve Sprouting In A Novel Model Of Disc Degeneration In Female Sprague Dawley Rats, David J. Lillyman, Fei San Lee, Evie C. Barnett, Tyler J. Miller, Moreno Lozano Alvaro, Henry C. Drvol, Rebecca A. Wachs

Biological Systems Engineering: Papers and Publications

Chronic low back pain is a global socioeconomic crisis and treatments are lacking in part due to inadequate models. Etiological research suggests that the predominant pathology associated with chronic low back pain is intervertebral disc degeneration. Various research teams have created rat models of disc degeneration, but the clinical translatability of these models has been limited by an absence of robust chronic painlike behavior. To address this deficit, disc degeneration was induced via an artificial annular tear in female Sprague Dawley rats. The subsequent degeneration, which was allowed to progress for 18-weeks, caused a drastic reduction in disc volume. Furthermore, …


A Segmentation-Guided Deep Learning Framework For Leaf Counting, Xijian Fan, Rui Zhou, Tardi Tjahjadi, Sruti Das Choudhury, Qiaolin Ye May 2022

A Segmentation-Guided Deep Learning Framework For Leaf Counting, Xijian Fan, Rui Zhou, Tardi Tjahjadi, Sruti Das Choudhury, Qiaolin Ye

Biological Systems Engineering: Papers and Publications

Deep learning-based methods have recently provided a means to rapidly and effectively extract various plant traits due to their powerful ability to depict a plant image across a variety of species and growth conditions. In this study, we focus on dealing with two fundamental tasks in plant phenotyping, i.e., plant segmentation and leaf counting, and propose a two-steam deep learning framework for segmenting plants and counting leaves with various size and shape from two-dimensional plant images. In the first stream, a multi-scale segmentation model using spatial pyramid is developed to extract leaves with different size and shape, where the fine-grained …


Towards A Cybersecurity Testbed For Agricultural Vehicles And Environments, Mark Freyhof, George Grispos, Santosh Pitla, Cody Stolle May 2022

Towards A Cybersecurity Testbed For Agricultural Vehicles And Environments, Mark Freyhof, George Grispos, Santosh Pitla, Cody Stolle

Biological Systems Engineering: Papers and Publications

In today’s modern farm, an increasing number of agricultural systems and vehicles are connected to the Internet. While the benefits of networked agricultural machinery are attractive, this technological shift is also creating an environment that is conducive to cyberattacks. While previous research has focused on general cybersecurity concerns in the farming and agricultural industries, minimal research has focused on techniques for identifying security vulnerabilities within actual agricultural systems that could be exploited by cybercriminals. Hence, this paper presents STAVE – a Security Testbed for Agricultural Vehicles and Environments – as a potential solution to assist with the identification of cybersecurity …


Surface Urban Energy And Water Balance Scheme (V2020a) In Vegetated Areas: Parameter Derivation And Performance Evaluation Using Fluxnet2015 Dataset, Hamidreza Omidvar, Ting Sun, Sue Grimmond, Dave Bilesbach, Andrew Black, Jiquan Chen, Zexia Duan, Zhiqiu Gao, Hiroki Iwata, Joseph P. Mcfadden Apr 2022

Surface Urban Energy And Water Balance Scheme (V2020a) In Vegetated Areas: Parameter Derivation And Performance Evaluation Using Fluxnet2015 Dataset, Hamidreza Omidvar, Ting Sun, Sue Grimmond, Dave Bilesbach, Andrew Black, Jiquan Chen, Zexia Duan, Zhiqiu Gao, Hiroki Iwata, Joseph P. Mcfadden

Biological Systems Engineering: Papers and Publications

To compare the impact of surface–atmosphere exchanges from rural and urban areas, fully vegetated areas (e.g. deciduous trees, evergreen trees and grass) commonly found adjacent to cities need to be modelled. Here we provide a general workflow to derive parameters for SUEWS (Surface Urban Energy and Water Balance Scheme), including those associated with vegetation phenology (via leaf area index, LAI), heat storage and surface conductance. As expected, attribution analysis of bias in SUEWS-modelled QE finds that surface conductance (gs) plays the dominant role; hence there is a need for more estimates of surface conductance parameters. The workflow …


Biogeosciences Perspectives On Integrated, Coordinated, Open, Networked (Icon) Science, D. Dwivedi, A. L.D. Santos, M. A. Barnard, T. M. Crimmins, A. Malhotra, K. A. Rod, K. S. Aho, S. M. Bell, B. Bomfim, F. Q. Brearley, H. Cadillo-Quiroz, J. Chen, C. M. Gough, E. B. Graham, C. R. Hakkenberg, L. Haygood, G. Koren, E. A. Lilleskov, L. K. Meredith, S. Naeher, Z. L. Nickerson, O. Pourret, H. S. Song, M. Stahl, N. Taş, R. Vargas, S. Weintraub-Leff Mar 2022

Biogeosciences Perspectives On Integrated, Coordinated, Open, Networked (Icon) Science, D. Dwivedi, A. L.D. Santos, M. A. Barnard, T. M. Crimmins, A. Malhotra, K. A. Rod, K. S. Aho, S. M. Bell, B. Bomfim, F. Q. Brearley, H. Cadillo-Quiroz, J. Chen, C. M. Gough, E. B. Graham, C. R. Hakkenberg, L. Haygood, G. Koren, E. A. Lilleskov, L. K. Meredith, S. Naeher, Z. L. Nickerson, O. Pourret, H. S. Song, M. Stahl, N. Taş, R. Vargas, S. Weintraub-Leff

Biological Systems Engineering: Papers and Publications

This article is composed of three independent commentaries about the state of Integrated, Coordinated, Open, Networked (ICON) principles in the American Geophysical Union Biogeosciences section, and discussion on the opportunities and challenges of adopting them. Each commentary focuses on a different topic: (a) Global collaboration, technology transfer, and application (Section 2), (b) Community engagement, community science, education, and stakeholder involvement (Section 3), and (c) Field, experimental, remote sensing, and real-time data research and application (Section 4). We discuss needs and strategies for implementing ICON and outline short- and long-term goals. The inclusion of global data and international community engagement are …


Land Use Influences The Composition And Antimicrobial Effects Of Propolis, Amara J. Orth, Emma H. Curran, Eric J. Haas, Andrew C. Kraemer, Audrey M. Anderson, Nicholas J. Mason, Carol A. Fassbinder-Orth Feb 2022

Land Use Influences The Composition And Antimicrobial Effects Of Propolis, Amara J. Orth, Emma H. Curran, Eric J. Haas, Andrew C. Kraemer, Audrey M. Anderson, Nicholas J. Mason, Carol A. Fassbinder-Orth

Biological Systems Engineering: Papers and Publications

Honey bee propolis is a complex, resinous mixture created by bees using plant sources such as leaves, flowers, and bud exudates. This study characterized how cropland surrounding apiaries affects the chemical composition and antimicrobial effects of propolis. The chemical composition and compound abundance of the propolis samples were analyzed using Gas Chromatography- Mass Spectrometry (GC-MS) and the antimicrobial effects were analyzed using the 50% minimum inhibitory concentration (MIC50) assay against four relevant bee pathogens, Serratia marcescens, Paenibacillus larvae, Lysinibacillus sphaericus, and Klebsiella pneumoniae. Propolis composition varied significantly with apiary, and cropland coverage predicted mean sum abundance of …


Precipitation And Temperature Extremes And Association With Large-Scale Climate Indices: An Observational Evidence Over India, S Rehana, Pranathi Yeleswarapu, Ghouse Basha, Francisco Munoz-Arriola Feb 2022

Precipitation And Temperature Extremes And Association With Large-Scale Climate Indices: An Observational Evidence Over India, S Rehana, Pranathi Yeleswarapu, Ghouse Basha, Francisco Munoz-Arriola

Biological Systems Engineering: Papers and Publications

Climate change exposes more frequent natural hazards and physical vulnerabilities to the built and natural environments. Extreme precipitation and temperature events will have a significant impact on both the natural environment and human society. However, it is unclear whether precipitation and temperature extremes increase physical vulnerabilities across scales and their links with large-scale climate indices. This study investigates the relationship between precipitation and temperature extremes, as recommended by the Expert Team on Climate Change Detection and Indices (ETCCDI), and large scale climatological phenomenon indices (Indian Summer Monsoon Index (ISMI), Arctic Oscillation (AO), and North Atlantic Oscillation (NAO)), using India as …