Biomedical Engineering and Bioengineering Commons^™

In-Vivo Ct Dosimetry During Virtual Colonoscopy, Jonathon W. Mueller

Dissertations and Theses (Open Access)

Virtual colonoscopy (VC) is a minimally invasive means for identifying colorectal polyps and colorectal lesions by insufflating a patient’s bowel, applying contrast agent via rectal catheter, and performing multi-detector computed tomography (MDCT) scans. The technique is recommended for colonic health screening by the American Cancer Society but not funded by the Centers for Medicare and Medicaid Services (CMS) partially because of potential risks from radiation exposure. To date, no in‐vivo organ dose measurements have been performed for MDCT scans; thus, the accuracy of any current dose estimates is currently unknown.

In this study, two TLDs were affixed to the inner …

Extrusion And Alkali Extrusion Of Corn Stover To Improve Enzyme Saccharification, Shujing Zhang

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Biomass pretreatment constitutes an important part in the whole process of bioethanol production. The main goals of pretreatment include improving cellulose accessibility to enzyme, enhancing sugar yields from hemicellulose, achieving low capital and energy costs, as well as low sugar degradation and low chemical requirements. Extrusion, as a continuous and high throughput pretreatment method, requires much less chemical compared to traditional alkali pretreatment. In this research, twin-screw extrusion was evaluated for its effect with regard to promoting sugar yields from corn stover. Also, the underlying factors contributing to this improvement were examined. It was found that extrusion with no chemicals …

Clinical Risk Factors For Osteoporosis In Ireland And The Uk: A Comparison Of Frax And Qfracturescores, N. M. Cummins, E. K. Poku, Mark R. Towler, O. M. O'Driscoll, S. H. Ralston

Chemical and Biochemical Engineering Faculty Research & Creative Works

Recently two algorithms have become available to estimate the 10-year probability of fracture in patients suspected to have osteoporosis on the basis of clinical risk factors: the FRAX algorithm and QFractureScores algorithm (QFracture). The aim of this study was to compare the performance of these algorithms in a study of fracture patients and controls recruited from six centers in the United Kingdom and Ireland. A total of 246 postmenopausal women aged 50-85 years who had recently suffered a low-trauma fracture were enrolled and their characteristics were compared with 338 female controls who had never suffered a fracture. Femoral bone mineral …

Equivalent Circuit Implementation Of Demyelinated Human Neuron In Spice, Nathan A. Angel

Master's Theses

This work focuses on modeling a demyelinated Hodgkin and Huxley (HH) neuron with Simulated Program with Integrated Circuit Emphasis (SPICE) platform. Demyelinating disorders affect over 350,000 people in the U.S and understanding the demyelination process at the cellular level is necessary to find safe ways to treat the diseases [9]. Utilizing a previous SPICE model of an electrically small cell neuron developed by Szlavik [32], an extended core conductor myelinated neuron was produced in this work. The myelinated neuron developed has seven active Nodes of Ranvier (nodes) separated by a myelin sheath. The myelin sheath can be successfully modeled with …

Global Flow Impacts Time-To-Passage Judgments Based On Local Motion Cues, Scott A. Beardsley, Elif M. Sikoglu, Heiko Hecht, Lucia M. Vaina

Biomedical Engineering Faculty Research and Publications

We assessed the effect of the coherence of optic flow on time-to-passage judgments in order to investigate the strategies that observers use when local expansion information is reduced or lacking. In the standard display, we presented a cloud of dots whose image expanded consistent with constant observer motion. The dots themselves, however, did not expand and were thus devoid of object expansion cues. Only the separations between the dots expanded. Subjects had to judge which of two colored target dots, presented at different simulated depths and lateral displacements would pass them first. Image velocities of the target dots were chosen …

Controlled Release Of 6-Aminonicotinamide From Aligned, Electrospun Fibers Alters Astrocyte Metabolism And Dorsal Root Ganglia Neurite Outgrowth, Nicholas J. Schaub, Ryan J. Gilbert

Chemical and Biochemical Engineering Faculty Research & Creative Works

Following central nervous system (CNS) injury, activated astrocytes form a glial scar that inhibits the migration of axons ultimately leading to regeneration failure. Biomaterials developed for CNS repair can provide local delivery of therapeutics and/or guidance mechanisms to encourage cell migration into damaged regions of the brain or spinal cord. Electro spun fibers are a promising type of biomaterial for CNS injury since these fibers can direct cellular and axonal migration while slowly delivering therapy to the injury site. In this study, it was hypothesized that inclusion of an anti-metabolite, 6-aminonicotinamide (6AN), within poly-l-lactic acid electro spun fibers could attenuate …

Quantitative Analysis Of The Reaction Between Gliadin And Citric Acid Under Weak Acidic And Weak Alkaline Conditions, Wei Li

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Gliadin was reacted with citric acid under weak acidic and weak alkaline conditions in both wet and dry states and the reaction mechanism was studied. The low morphological stability in an aqueous environment and inferior mechanical properties have restricted the applications of plant proteins, although these materials possess a unique structure, biocompatibility and biodegradability. Carboxylic acids such as citric acid are inexpensive and nontoxic chemicals and are preferred for crosslinking proteins and cellulose to improve the desired properties of the materials.

In this study, gliadin was chosen as a model of plant proteins to react with citric acid. However, previous …

Silk Fibroin-Based Scaffolds For Tissue Engineering Applications, Jennifer Mccool

Theses and Dissertations

This study focused on the comparison of the electrospun silk scaffolds to the electrospun silk fibroin gel scaffolds. Moreover, this study examined the differences in cross-linking effects of genipin and methanol as well as solvents on the mechanical properties and cell compatibility of the scaffolds. Silk scaffolds were electrospun from an aqueous solution or 1,1,1,3,3-hexafluoro-2-propanol (HFIP) without genipin, immediately after 8 % (wt) genipin was added to the solution, and 18 hours after genipin blended with the solution. Uniaxial tensile testing determined that the silk scaffolds electrospun from water exhibit a higher modulus and peak stress than that of the …

Zein Nanospheres For Gene Delivery, Mary C. Regier

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Particulates incorporating DNA provide for protection and sustained release of DNA, and thus are promising candidates for DNA delivery systems. Among the routes of administration for gene delivery, the oral route is perhaps the most appealing as it is associated with patient comfort and compliance and allows for targeting to intestinal targets for therapeutic and vaccination applications. With the goal of realizing the potential of an oral DNA delivery system, zein, a hydrophobic protein from corn that is biocompatible and degraded enzymatically, was investigated. This thesis describes the formulation of zein nanospheres encapsulating DNA by a coacervation technique and their …

Development Of A Direct-Write System For Ceramic Colloidal Inks, Jorge Mireles^, Miguel Verdecchia, David Espalin, Geoffrey Saupe, Noe Vargas, Frank Medina, Ryan Wicker*

COURI Symposium Abstracts, Summer 2011

No abstract provided.

Analysis Of Sealing Methods For Fdm-Fabricated Parts, Arturo Adame^, Jorge Mireles, David Espalin, Frank Medina, Rob Winker, Terry Hoppe, Bob Zinniel, Ryan Wicker*

COURI Symposium Abstracts, Summer 2011

No abstract provided.

Effects Of Β-Cyclodextrin As A Capping Agent On The Antibacterial Properties Of Agnps, Swarna Jaiswal, Brendan Duffy, Patrick Mchale

Conference Papers

No abstract provided.

Sensorimotor Control Of 3d Arm Movement And Stability In Post-Stroke Hemiparesis, Kakanand Alfonsomarie Srungboonmee

Dissertations (1934 -)

Deficits of the affected arm in people with post-stroke hemiparesis have been generally associated with decreased strength and increased spasticity. These deficits are varied in proximal (shoulder) and distal (elbow) joints which results in an overall impairment during movement or during stabilization of hand position in space. In this study, reaching of the hemiparetic arm in 3D workspace was characterized by a curved and non-smooth endpoint trajectory and a reduced functional range of motion, compared to the unimpaired arm. Smoother trajectories were observed in the acceleration phase more than the deceleration phase, which was common to both the stroke subjects …

Nanofabrication Of Halloysite-Pcl Composite Scaffolds And Functionalization Of Titanium For Tissue Regeneration, Shraddha Parshottambhai Patel

Doctoral Dissertations

Major medical needs may be achieved through regenerative medicine. Nanotechnology has triggered a research revolution in many important areas such as the biomedical sciences and bioengineering at the molecular level which has grown significantly due to the availability of new analytical applications and tools based on nanotechnology. Clinical conditions and diseases being targeted by nanotechnology research include burns, Alzheimer's and Parkinson's disease, implant failure, improved wound healing, birth defects, osteoporosis and congestive heart defects. Therapeutic use of growth factors and drugs to stimulate the production and/or function of endogenous cells represents a key area of regenerative medicine. The development of …

Muscle Contributions To Frontal And Transverse Plane Whole-Body Angular Momentum, Richard R. Neptune, Craig P. Mcgowan, Allison Kinney

Mechanical and Aerospace Engineering Faculty Publications

The purpose of this study was to build upon previous work by analyzing how gravity and individual muscles contribute to frontal and traverse plane whole-body angular momentum. Identifying which muscles are responsible for generating angular momentum has important implications for the diagnosis and treatment of movement disorders.

A Study On Facility Planning Using Discrete Event Simulation: Case Study Of A Grain Delivery Terminal, Sarah M. Asio

Department of Industrial and Management Systems Engineering: Dissertations, Theses, and Student Research

The application of traditional approaches to the design of efficient facilities can be tedious and time consuming when uncertainty and a number of constraints exist. Queuing models and mathematical programming techniques are not able to capture the complex interaction between resources, the environment and space constraints for dynamic stochastic processes. In the following study discrete event simulation is applied to the facility planning process for a grain delivery terminal. The discrete event simulation approach has been applied to studies such as capacity planning and facility layout for a gasoline station and evaluating the resource requirements for a manufacturing facility. To …

Structure And Optical Properties Of Self-Assembled Multicomponent Plasmonic Nanogels, Tao Cong, Satvik N. Wani, Peter Anthony Paynter, Radhakrishna Sureshkumar

Biomedical and Chemical Engineering - All Scholarship

Multicomponent plasmonic nanogels (PNGs) capable of broadband absorption of light in the 400-700 nm wavelength range were synthesized by the self-assembly of metal nanoparticles with wormlike surfactant micelles. Small angle x-ray scattering and rheological experiments suggest that the nanoparticles bridge micelle fragments to aid the formation a stable gel phase with exceptional color uniformity. Their optical absorbance could be robustly tuned by changing the nanoparticle type (Au/Ag), size, shape, and/or concentration. The PNGs have relatively low viscosity and are thermoreversible. Potential applications to the manufacturing of coatings and interfaces for solar energy harvesting and reconfigurable optical devices can be envisioned.

Role Of Tendon Vibration In Multijoint Reflex Coupling In The Hemiparetic Arm Post Stroke, Bani Gadhoke

Master's Theses (2009 -)

Post stroke hemiparesis causes reflex coupling in multiple muscles of the arm, leading to atypical movements that hamper motor control. In particular, people post-stroke can become unstable while holding the arm at the end of a planar motion. Recently, we have found that tendon vibration of the wrist flexors improves the stability of the arm during a hold task. The objective of the current study was to identify the effects of vibration applied to the wrist flexors on the biceps and triceps stretch reflexes, generated using a tendon tapper. In people post-stroke, tendon tap perturbations of the biceps and triceps …

Statistical Optimizations Of Muscle Action Potentials Based On Modeling And Analysis Of Ion Channel Dynamics, Gyutae Kim

Electrical & Computer Engineering Theses & Dissertations

An Electromyogram (EMG) is an electrical signal, which is measured from a skeletal muscle during voluntary and involuntary contractions. EMGs are useful in interpreting pathological states of the musculoskeletal system. In particular, EMGs offer valuable information concerning the timing of muscular activity and its relative intensity. Various EMG models have developed with many different purposes from a pure mathematical model to a pattern structure model [17,46]. Sophisticated EMG models are necessary to examine the effects of small changes in muscular morphology and activities [46]. Due to the crucial importance of EMG models, all factors in the model should be precise …

Detection Of Specific Biological Antigens Using Ac Electrochemical Impedance Spectroscopy, Darrel Angelo Mazzari

Dissertations (1934 -)

When certain antigens are present in our environment, a rapid, on-site, accurate, selective, and repeatable detection method can be invaluable in preventing illness or saving lives. Rapid detection of these antigens is important to avert spreading infections.

Currently, capturing a sample and sending it to a laboratory can take weeks to get results, which can be much too long. Conventional sensing methodologies include various electrical measurements as capacitive, potentiometric, piezoelectric, surface plasmon resonance (SPR), and quartz crystal microbalance (QCM). Of particular power and interest is Alternating Current (AC) Electrochemical Impedance Spectroscopy (EIS) which provides for the characterization of the electrical …

Modeling And Computational Framework For The Specification And Simulation Of Large-Scale Spiking Neural Networks, David James Herzfeld

Master's Theses (2009 -)

Recurrently connected neural networks, in which synaptic connections between neurons can form directed cycles, have been used extensively in the literature to describe various neurophysiological phenomena, such as coordinate transformations during sensorimotor integration. Due to the directed cycles that can exist in recurrent networks, there is no well-known way to a priori specify synaptic weights to elicit neuron spiking responses to stimuli based on available neurophysiology. Using a common mean field assumption, that synaptic inputs are uncorrelated for sufficiently large populations of neurons, we show that the connection topology and a neuron's response characteristics can be decoupled. This assumption allows …

Asymmetric Transfer Of Task Dependent Perceptual Learning In Visual Motion Processing, Sampada Charudatta Wakde

Master's Theses (2009 -)

The effects of perceptual learning (PL) on the sensory representation are not fully understood, especially for higher–level visual mechanisms more directly relevant to behavior. The objective of this research is to elucidate the mechanisms that mediate task dependent learning by determining where and how task dependent learning occurs in the later stages of visual motion processing.

Eighteen subjects were trained to perform a dual–2TAFC visual discrimination task in which they were required to simultaneously detect changes in the direction of moving dots (task–1) and the proportion of red dots (task–2) shown in two stimulus apertures presented in either the left …

Identifying Changes In Climatic Trends And The Fingerprints Of Landuse And Landcover Changes In The High Plains Of The Usa, Denis Mutiibwa

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Human activities such as conversion of natural ecosystem to croplands and urban-centers, deforestation and afforestation impact biophysical properties of land surface such as albedo, energy balance, and surface roughness. Alterations in these properties affect the heat and moisture exchanges between the land surface and atmospheric boundary layer. The objectives of this research were; (i) to quantitatively identify the High plains’ regional climate change in temperatures over the period 1895 to 2006, (ii) detect the signatures of anthropogenic forcing of LULC changes on the regional climate change of the High Plains, and (iii) examine the trends in evolving regional latent heat …

Monitoring Of Mesenchymal Based Constructs Using Magnetic Resonance Elastography, Evan T. Curtis

Department of Agricultural and Biological Systems Engineering: Dissertations, Theses, and Student Research

Evaluating the functionality of an engineered material lies in the proper characterization of its material and functional properties. In the treatment of musculoskeletal disorders, engineered bone or fat tissue must behave as an adequate replacement else failure of the material could result in discomfort and further surgical procedures. A significant material characteristic that reflects tissue development is the mechanical properties (i.e. shear strength and viscosity). Shear strength and viscosity provide an indication of how efficient the material is in dissipating energy. Energy dissipation occurs naturally in many tissues including fat and can prevent damage to deeper tissues. Many of the …

A Silicon Nanoparticle-Based Polymeric Nano-Composite Material For Glucose Sensing, Qiang Liu, Munir H. Nayfeh, Siu-Tung Yau

Electrical and Computer Engineering Faculty Publications

A novel non-enzyme glucose sensing material has been prepared by incorporating ultrasmall (1–3 nm) silicon nanoparticles in polyaniline, a conducting polymer, as a nano-composite material (NCM). When deposited on electrodes, the composite material with three-dimensional loading of the nanoparticles showed a significantly enhanced amperometric response to glucose, compared to the nanoparticles deposited on bare electrodes and electrodes immobilized with the enzyme, glucose oxidase. The linear range of the glucose response of NCM electrodes covered both the hypo- and hyper-glycaemic glucose levels. The sensitivity of the NCM electrodes was 2.5 μA cm⁻² mM⁻¹. The NCM electrodes’ selectivity for …

Differential Responses Of Targeted Lung Redox Enzymes To Rat Exposure To 60 Or 85% Oxygen, Zhuohui Gan, David L. Roerig, Anne V. Clough, Said H. Audi

Biomedical Engineering Faculty Research and Publications

Rat exposure to 60% O₂ (hyper-60) or 85% O₂ (hyper-85) for 7 days confers susceptibility or tolerance, respectively, of the otherwise lethal effects of exposure to 100% O₂. The objective of this study was to determine whether activities of the antioxidant cytosolic enzyme NAD(P)H:quinone oxidoreductase 1 (NQO1) and mitochondrial complex III are differentially altered in hyper-60 and hyper-85 lungs. Duroquinone (DQ), an NQO1 substrate, or its hydroquinone (DQH₂), a complex III substrate, was infused into the arterial inflow of isolated, perfused lungs, and the venous efflux rates of DQH₂ and DQ were measured. …

Adaptive Real-Time Decoding Of Brain Signals For Long-Term Control Of A Neuro-Prosthetic Device, Tushar Ashok Dharampal

Master's Theses (2009 -)

Changes in the statistical properties of neural signals recorded at the brain machine interface (BMI) pose significant challenges for accurate long-term control of prostheses interfaced directly with the brain by continuously altering the relationship between neural responses and desired action. In this thesis, we develop and test an adaptive decoding algorithm that can recover from changes in the statistical properties of neural signals within minutes. The adaptive decoding algorithm uses a Kalman filter as part of a dual-filter design to continuously optimize the relationship between the observed neural responses and the desired action of the prosthesis. Performance of the algorithm …

Examining The Relationships Among Injury Outcomes, Velocity And Grip Strength During Dynamic Platform Perturbation, Braden Cripe

Master's Theses (2009 -)

Studies examining the relationship between inputs and outputs for simulated models of dynamically perturbed horizontal platforms are scarce. Most of these scenarios include a standing operator with upper extremity grip, oftentimes subjected to lateral impulses, which may lead to occupant injury. While the detailed study of these collision scenarios is sparse, the prevalence of their application is great.

This thesis aims to identify how two input parameters, velocity change (ÄV) and grip strength, affect injury assessment reference values (IARVs). This is accomplished by using Mathematical Dynamic Modeling (MADYMO) software to simulate the scenarios defined by those inputs. In the simulation, …

Methods For Detecting High-Frequency Oscillations In Ongoing Brain Signals: Application To The Determination Of Epileptic Seizure Onset Zones, Chiran Dilip Doshi

Master's Theses (2009 -)

Epilepsy is a neurological disorder with varied expression. Patients with focal onset seizures that are resistant to medications can benefit from ablative surgery. However, localization of the seizure onset zone (SOZ) and characterization of propagation to secondary areas can be challenging. The present study aimed at developing the appropriate signal processing methodology to detect bursts of interictal high-frequency oscillations (HFOs), as a possible signature of the SOZ, in patients with drug-resistant partial epilepsy. Additionally, invasive interictal and ictal intracranial electroencephalography (iEEG) data and non-invasive electromagnetic source imaging with magnetoencephalography (MEG) data from three subjects were analyzed. We developed a novel …

Tools For Creating Wide-Field Views Of The Human Retina Using Optical Coherence Tomography, Ashavini M. Pavaskar

Master's Theses (2009 -)

Optical Coherence Tomography (OCT) has allowed in-vivo viewing of details of retinal layers like never before. With the development of spectral domain OCT (SD-OCT) details of nearly 2µm axial resolution and higher imaging speed have been reported. Nevertheless, a single volume scan of the retina is typically restricted to 6mm x 6mm in size. Having a larger field of view of the retina will definitely enhance the clinical utility of the OCT.

A tool was developed for creating wide-field thickness maps of the retina by combining the use of already available tools like i2k Retina (DualAlign, LLC, Clifton Park, NY) …