Engineering Commons^™

Using Jackknife To Assess The Quality Of Gene Order Phylogenies, Jian Shi, Yiwei Zhang, Haiwei Luo, Jijun Tang

Faculty Publications

Background
In recent years, gene order data has attracted increasing attention from both biologists and computer scientists as a new type of data for phylogenetic analysis. If gene orders are viewed as one character with a large number of states, traditional bootstrap procedures cannot be applied. Researchers began to use a jackknife resampling method to assess the quality of gene order phylogenies.

Results
In this paper, we design and conduct a set of experiments to validate the performance of this jackknife procedure and provide discussions on how to conduct it properly. Our results show that jackknife is very useful to …

High-Performance Heterogeneous Computing With The Convey Hc-1, Jason D. Bakos

Faculty Publications

Unlike other socket-based reconfigurable coprocessors, the Convey HC-1 contains nearly 40 field-programmable gate arrays, scatter-gather memory modules, a high-capacity crossbar switch, and a fully coherent memory system.

Comparison Of Stabilization Methods For Fixed-Speed Wind Generator Systems, Mohammod Ali, Bin Wu

Faculty Publications

Static Synchronous Compensator (STATCOM), Pitch control system, Braking Resistor (BR), and Superconducting Magnetic Energy Storage (SMES) have recently been reported as stabilization methods for fixed-speed wind generator systems. although the individual technologies are well documented, a comparative study of these systems has not been reported so far. This paper aims to fill in the gap, and provides a comprehensive analysis of these stabilization methods for fixed-speed wind generator systems. The analysis is performed in terms of transient stability enhancement, controller complexity, and cost. a novel feature of this work is that the transient stability analysis of wind generator system is …

Integrated Circuit Implementation For A Gan Hfet Driver Circuit, Bo Wang, Jason D. Bakos, Antonello Monti

Faculty Publications

This paper presents the design and implementation of a new integrated circuit (IC) that is suitable for driving the new generation of high-frequency GaN HFETs. The circuit, based upon a resonant switching transition technique, is first briefly described and then discussed in detail, focusing on the design process practical considerations. A new level-shifter topology, used to generate the zero and negative gate-source voltages required to switch the GaN HFET, is introduced and analyzed. The experimental measurements included in this paper report the results of tests carried out on an IC designed and fabricated as part of the multiproject die in …

Quantifying Individual Potential Contributions Of The Hybrid Sulfur Electrolyzer, John A. Staser, Maximilian B. Gorensek, John W. Weidner

Faculty Publications

The hybrid sulfur cycle has been investigated as a means to produce clean hydrogen efficiently on a large scale by first decomposing H₂SO₄ to SO₂, O₂, and H₂O and then electrochemically oxidizing SO₂ back to H₂SO₄ with the cogeneration of H₂. Thus far, it has been determined that the total cell potential for the hybrid sulfur electrolyzer is controlled mainly by water transport in the cell. Water is required at the anode to participate in the oxidation of SO₂ to H₂SO_{4 …}

A Novel Far-Field Nanoscopic Velocimetry For Nanofluidics, C. Kuang, Guiren Wang

Faculty Publications

For the first time we have been able to measure the flow velocity profile for nanofluidics with a spatial resolution better than 70 nm. Due to the diffraction resolution barrier, traditional optical methods have so far failed in measuring the velocity profile in a nanocapillary or a closed nanochannel without an opened sidewall. A novel optical point measurement method is presented which applies stimulated emission depletion (STED) microscopy to laser induced fluorescence photobleaching anemometer (LIFPA) techniques to measure flow velocity. Herein we demonstrate this far-field nanoscopic velocimetry method by measuring the velocity profile in a nanocapillary with an inner diameter …

An Efficient Electrochemical–Thermal Model For A Lithium-Ion Cell By Using The Proper Orthogonal Decomposition Method, Long Cai, Ralph E. White

Faculty Publications

The proper orthogonal decomposition method was applied to develop an efficient, reduced order electrochemical–thermal model for a lithium-ion cell. This model was validated for discharge simulations over a wide range of C rates and various cooling conditions of the cell. The reduced order model agrees well with the COMSOL model, a commercial finite element method solver, and requires times less computation time than the COMSOL model. The model predictions indicate that the discharge time or percent of capacity removed from the cell at an end of discharge voltage of 3.0 V depends on the rate of the discharge and heat …

Maximizing The Life Of A Lithium-Ion Cell By Optimization Of Charging Rates, Saeed Khaleghi Rahimian, Sean Rayman, Ralph E. White

Faculty Publications

Using a dynamic optimization method, the optimum charge currents as a function of cycle number during cycling for the lithium-ion cell are obtained. A single particle physics-based model, which includes capacity fade, was applied to simulate the cell performance under low earth-orbit (LEO) cycling conditions. Useful cell life is defined as the number of cycles before the end of discharge voltage drops below 3.0 V or the cell discharge capacity becomes less than 20% of the original discharge capacity. The simulated useful cell life can be increased by ∼29.28% by varying the charge current.

Theoretical Analysis Of Stresses In A Lithium Ion Cell, Sindhuja Renganathan, Godfrey Sikha, Shriram Santhanagopalan, Ralph E. White

Faculty Publications

A mathematical model to simulate the generation of mechanical stress during the discharge process in a dual porous insertion electrode cell sandwich comprised of lithium cobalt oxide and carbon is presented. The model attributes stress buildup within intercalation electrodes to two different aspects: changes in the lattice volume due to intercalation and phase transformation during the charge/discharge process. The model is used to predict the influence of cell design parameters such as thickness, porosity, and particle size of the electrodes on the magnitude of stress generation. The model developed in this study can be used to understand the mechanical degradation …

Multimetallic Electrocatalysts Of Pt, Ru, And Ir Supported On Anatase And Rutile Tio2 For Oxygen Evolution In An Acid Environment, Roderick E. Fuentes, Jake Farell, John W. Weidner

Faculty Publications

Anatase and rutile TiO2 were investigated as stable supports for different multimetallic nanoparticles (i.e., Pt:Ru, Pt:Ir, Pt:Ru:Ir, and Ir:Ru) and tested for activity toward the oxygen evolution reaction (OER). Overall, Ir:Ru had the highest activity toward OER (i.e., current per gram of metal) compared to the other multimetallic combinations studied. This bimetallic supported on anatase TiO2 had a 53% higher current per gram of metal than an unsupported electrocatalyst of the same composition. The higher catalyst utilization of the supported electrocatalysts for OER is consistent with small, well-dispersed nanoparticles, which were observed in high resolution transmission electron microscopy images.

Mesoporous Tin Oxide As An Oxidation-Resistant Catalyst Support For Proton Exchange Membrane Fuel Cells, Peng Zhang, Sheng-Yang Huang, Branko N. Popov

Faculty Publications

Mesoporous catalyst support based on tin oxide (SnO₂) is synthesized with high surface area of 205 m² g⁻¹ and with narrow pore size distribution. Modified polyol method is used to deposit platinum on SnO₂. The physical properties of the support and the SnO₂-supported Pt catalyst (Pt/SnO₂) are characterized by using the Brunauer, Emmett, and Teller method, X-ray diffraction, and transmission electron microscopy. The electrochemical stability and durability of the Pt/SnO₂ catalyst are investigated by the accelerated stress tests proposed by the U.S. Department of Energy. Pt/SnO₂ catalyst exhibits …

Genome3d: A Viewer-Model Framework For Integrating And Visualizing Multi-Scale Epigenomic Information Within A Three-Dimensional Genome, Thomas M. Asbury, Matt Mitman, Jijun Tang, W. Jim Zheng

Faculty Publications

Background
New technologies are enabling the measurement of many types of genomic and epigenomic information at scales ranging from the atomic to nuclear. Much of this new data is increasingly structural in nature, and is often difficult to coordinate with other data sets. There is a legitimate need for integrating and visualizing these disparate data sets to reveal structural relationships not apparent when looking at these data in isolation.

Results
We have applied object-oriented technology to develop a downloadable visualization tool, Genome3D, for integrating and displaying epigenomic data within a prescribed three-dimensional physical model of the human genome. In order …

Enhance Diamond Coating Adhesion By Oriented Interlayer Microcracking, Habio Guo, Xingcheng Xiao, Yue Qi, Zhi-Hui Xu, Xiaodong Li

Faculty Publications

In this paper, we report a microcrack toughening mechanism for enhancing the adhesion of diamondcoating. The oriented microcracks were formed within the TiC interlayer to dissipate strain energy and accommodate deformation via the crack opening-closing mechanism, thus enhancing the coating/substrate interfacial toughness. The delamination of diamondcoating was effectively prevented when the parallel microcracks were confined within the interlayer and arrested at interfaces of coating/interlayer/substrate. Density functional theory calculations revealed that the highly anisotropicfracture strength of the TiC phase energetically favors crack initiation and propagation along (100) planes only, which are 54.7° away from the interface. These microcracks are constrained inside …

Phage-Induced Alignment Of Membrane Proteins Enables The Measurement And Structural Analysis Of Residual Dipolar Couplings With Dipolar Waves And Lambda-Maps, Sang Ho Park, Woo Sung Son, Rishi Mukhopadhyay, Homayoun Valafar, Stanley J. Opella

Faculty Publications

At pH > 6 added filamentous bacteriophage fd is compatible with many of the detergents used to solubilize membrane proteins for solution NMR studies of membrane proteins and, therefore, serves as an alignment media. In combination with strained polyacrylamide gel alignment, Dipolar Waves can be used to directly assess the secondary structure and a λ-map extracts the order tensors for de novo structure calculation of membrane proteins without distance restraints.

3510-V 390-M Omega . Cm(2) 4h-Sic Lateral Jfet On A Semi-Insulating Substrate, Chih-Fang Huang, Cheng-Li Kan, Tian-Li Wu, Meng-Chia Lee, Yo-Zthu Liu, Kung-Yen Lee, Feng Zhao

Faculty Publications

The performance of high-voltage 4H-SiC lateral JFETs on a semi-insulating substrate is reported in this letter. The design of the voltage-supporting layers is based on the charge compensation of p- and n-type epilayers. The best measured breakdown voltage is 3510 V, which, to the authors' knowledge, is the highest value ever reported for SiC lateral switching devices. The R-on of this device is 390 m Omega . cm(2), in which 61% is due to the drift-region resistance. The BV2/R-on is 32 MW/cm(2), which is typical among other reported SiC lateral devices.

X-Ray Photoemission Analysis Of Chemically Treated Gate Semiconductor Surfaces For Radiation Detector Applications, A. J. Nelson, A. M. Conway, B. W. Sturm, E. M. Behymer, C. E. Reinhardt, R. J. Nikolic, S. A. Payne, G. Pabst, K. C. Mandal

Faculty Publications

No abstract provided.

A Miniature Implanted Inverted-F Antenna For Gps Application, Mohammed Z. Azad, Mohammod Ali

Faculty Publications

A miniature implanted Hilbert inverted-F antenna design at the 1.575 GHz; global positioning system (GPS) frequency is proposed, which can be used to track the location of its user, e.g., the elderly with declining mental capacity (alzheimer's disease). A detailed parametric study of the antenna design is performed by considering it to be implanted within a human muscle model. The effects of the substrate, superstrate, and the nearby muscle tissue on antenna performance are carefully investigated. A laboratory prototype of the antenna was built and tested within a muscle equivalent fluid indicating good VSWR performance. Finally the said antenna when …

Gene Order Phylogeny And The Evolution Of Methanogens, Haiwei Luo, Zhiyi Sun, William Arndt, Jian Shi, Robert Friedman, Jijun Tang

Faculty Publications

Methanogens are a phylogenetically diverse group belonging to Euryarchaeota. Previously, phylogenetic approaches using large datasets revealed that methanogens can be grouped into two classes, “Class I” and “Class II”. However, some deep relationships were not resolved. For instance, the monophyly of “Class I” methanogens, which consist of Methanopyrales, Methanobacteriales and Methanococcales, is disputable due to weak statistical support. In this study, we use MSOAR to identify common orthologous genes from eight methanogen species and a Thermococcale species (outgroup), and apply GRAPPA and FastME to compute distance-based gene order phylogeny. The gene order phylogeny supports two classes of methanogens, but it …

Probability Density Functions For Snir In Ds-Cdma, David W. Matolak

Faculty Publications

Analytical expressions for the probability density function of block-wise signal-to-noise-plus-interference ratio for both synchronous and asynchronous direct-sequence spread spectrum code-division multiple access systems are developed, for equal average energy signals on the Gaussian and Rayleigh flat fading channels. Using the standard Gaussian approximation for multi-user interference, accurate density approximations are obtained, which agree very well with computer simulation results.

Tobacco Mosaic Virus Templated Synthesis Of One Dimensional Inorganic-Polymer Hybrid Fibres, Jianhua Rong, Fiona Oberbeck, Xinnan Wang, Xiaodong Li, Jerry Oxsher, Zhongwei Niu, Qian Wang

Faculty Publications

Inorganic–polymer hybrid nanofibres were prepared by using a rod-like tobacco mosaic virus (TMV) as a template. With tetraethylorthosilicate (TEOS) as a precursor, long silica-coated TMVfibres were formed via a head-to-tail assembly, which showed a substantial increase of the elastic modulus. Furthermore, homogenous titania–TMV hybrid fibres could be prepared using polyaniline-coated TMV fibres as a template, which were used to form a composite film that was able to sense liquefied petroleum gases.

Parallel-Connected Solar Pv System To Address Partial And Rapidly Fluctuating Shadow Conditions, Lijun Gao, Roger A. Dougal, Shengyi Liu, Albena P. Iotova

Faculty Publications

Solar photovoltaic (PV) arrays in portable applications are often subject to partial shading and rapid fluctuations of shading. In the usual series-connected wiring scheme, the residual energy generated by partially shaded cells either cannot be collected (if diode bypassed) or, worse, impedes collection of power from the remaining fully illuminated cells (if not bypassed). Rapid fluctuation of the shading pattern makes maximum power point (MPP) tracking difficult; generally, there will exist multiple local MPPs, and their values will change as rapidly as does the illumination. In this paper, a portable solar PV system that effectively eliminates both of the aforementioned …

Exploiting Matrix Symmetry To Improve Fpgaaccelerated Conjugate Gradient, Jason D. Bakos, Krishna K. Nagar

Faculty Publications

In this paper we describe a new approach for accelerating the Conjugate Gradient (CG) method using an FPGA co-processor. As in previous approaches, our co-processor performs a double-precision sparse matrix-vector multiplication. However, our implementation doubles the amount of computation per unit of input data by exploiting the symmetry of the input matrix and computing the upper and lower triangle of the input matrix in parallel. Using a Virtex-2 Pro 100 FPGA, we have achieved an observed computational throughput of 1155 MFLOPS.

La0.85Sr0.15Mno3− Infiltrated Y0.5Bi1.5O3 Cathodes For Intermediate-Temperature Solid Oxide Fuel Cells, Jiang Zhiyi, Changrong Xia, Fei Zhao, Fanglin Chen

Faculty Publications

Porous yttria-stabilized bismuth oxides (YSB) were investigated as the backbones for (LSM) infiltrated cathodes in intermediate-temperature solid oxide fuel cells. The cathodes were evaluated using anode-supported single cells with scandia-stabilized zirconia as the electrolytes. With humidified as the fuel, the cell showed peak power density of 0.33, 0.52, and at 650, 700, and , respectively. At , the cell polarization resistance was only , of the lowest value previously reported, indicating that YSB is a promising backbone for the LSM infiltrated cathode.

Deep Levels In Gate And Gate:In Crystals Investigated By Deep-Level Transient Spectroscopy And Photoluminescence, Y. Cui, D. D. Caudel, P. Bhattacharya, A. Burger, K. C. Mandal, D. Johnstone, S. A. Payne

Faculty Publications

No abstract provided.

Low Temperature, Organic-Free Synthesis Of Ba3B6O9(Oh)6 Nanorods And Ss-Bab2O4 Nanospindles, Rui Li, Xinyoung Tao, Xiaodong Li

Faculty Publications

Using a low temperature, organic-free hydrothermal technique, single-crystalline barium polyborate Ba₃B₆O₉(OH)₆ (BBOH) nanorods were synthesized. It was found that β-BaB₂O₄(BBO) nanospindles can be achieved by annealing the BBOH nanorods at a relatively low temperature of 810 °C. Transmission electron microscopy (TEM), X-ray diffraction (XRD), and X-ray photoelectron spectroscopy (XPS) techniques were used to characterize these nanomaterials. The formation mechanisms are discussed in conjunction with the crystallographic characteristics and surface energy of the BBOH nanorods and BBO nanospindles. UV-vis absorption spectra demonstrated that both BBOH nanorods and BBO nanospindles are …

Unveiling The Formation Mechanism Of Pseudo-Single-Crystal Aragonite Platelets In Nacre, Xiaodong Li, Zaiwang Huang

Faculty Publications

We demonstrate direct evidence that a single-crystal-like aragonite platelet is essentially assembled with aragonite nanoparticles. The aragonite nanoparticles are readily oriented and assembled into pseudo-single-crystal aragonite platelets via screw dislocation and amorphous aggregation, which are two dominant mediating mechanisms between nanoparticles during biomineralization. These findings will advance our understanding of nacre’s biomineralization process and provide additional design guidelines for developing biomimetic materials.

Correlating Threshold Power With Free-Space Bandwidth For Low-Directivity Antennas, Abu T.M. Sayem, Mark G. Douglas, Gernot Schmidt, Ben Petric, Mohammod Ali

Faculty Publications

This paper develops a threshold power rationale that can be used to demonstrate inherent compliance for portable wireless devices with specific absorption rate (SAR) limits over the 300-6000-MHz frequency range. This is achieved first by understanding the relationship between basic antenna parameters (bandwidth, operating frequency, and distance to the body) and SAR. From this, an upper limit is determined for the power transmitted by a portable wireless device such that the SAR will not exceed the compliance limit. Based on the presented computational and measured data, an empirical formula is developed for the threshold power as a function of the …

Reduction Of Model Order Based On Proper Orthogonal Decomposition For Lithium-Ion Battery Simulations, Long Cai, Ralph E. White

Faculty Publications

A reduced-order model (ROM) is developed using proper orthogonal decomposition (POD) for a physics-based lithium-ion battery model. The methodology to obtain the proper orthogonal modes and to analyze their optimality is included. The POD-based ROM for a lithium-ion battery is used to simulate a charge/discharge process and the behavior of a battery pack. Compared to the physics-based model, the computational time to solve the ROM is significantly less, and the two models show excellent agreement.

Effect Of Water Transport On The Production Of Hydrogen And Sulfuric Acid In A Pem Electrolyzer, John A. Staser, John W. Weidner

Faculty Publications

The thermochemical cycle involving the interconversion between sulfur dioxide and sulfuric acid is a promising method for efficient, large-scale production of hydrogen. A key step in the process is the oxidation of sulfur dioxide to sulfuric acid in an electrolyzer. Gaseous SO₂ fed to a proton exchange membrane (PEM) electrolyzer was previously investigated and was shown to be a promising system for the electrolysis step. A critical factor in the performance of this gas-fed electrolyzer is the management of water since it: (i) is needed as a reactant, (ii) determines the product sulfuric acid concentration, …

Electrochemical Removal Of Carbon Monoxide In Reformate Hydrogen For Fueling Proton Exchange Membrane Fuel Cells, Sivagaminathan Balasubramanian, Charles E. Holland, John W. Weidner

Faculty Publications

A twin-cell electrochemical filter is demonstrated to reduce the CO concentration in reformate hydrogen. In this design, the potential and gas flow are switched between the two filter cells so that alternative CO adsorption and oxidation occur in each cell while providing a continuous flow of H2 to a fuel cell. The effects of filter switching time and applied potential on the CO concentration of gas exiting the filter are presented here for a CO concentration of 1000 ppm in nitrogen flowing at 100 cm3/min. The parasitic loss of hydrogen from a corresponding reformate stream was estimated to be 1.5%.