Engineering Commons^™

Tissue Engineering Bone Using Autologous Progenitor Cells In The Peritoneum, Jinhui Shen, Ramesh Saxena, Cheng Cheng Zhang, Joseph Borrelli Jr., Liping Tang, Ashwin Nair

Bioengineering Faculty Publications - Archive

No abstract provided.

Neural Correlates Of Spectral, Temporal And Spectro-Temporal Modulation, Anusha Mohan

USF Tampa Graduate Theses and Dissertations

Natural sounds are characterized by the distribution of acoustic power over different frequency regions and/or time. This is termed spectral, temporal or spectro-temporal modulation. The auditory system is equipped with banks of filters tuned to different spectral, temporal and spectro-temporal modulation frequencies (SM, TM, STM). The sensitivity of the peripheral system to these modulations can be measured by undertaking a linear systems approach. In addition to understanding the psychophysical sensitivity, studying the neural patterns of their processing is also critical. The current study is an attempt to understand the relationship between the behavioral and neural correlates of spectral, temporal and …

Submicron-Resolution Photoacoustic Microscopy Of Endogenous Light-Absorbing Biomolecules, Chi Zhang

All Theses and Dissertations (ETDs)

Photoacoustic imaging in biomedicine has the unique advantage of probing endogenous light absorbers at various length scales with a 100% relative sensitivity. Among the several modalities of photoacoustic imaging, optical-resolution photoacoustic microscopy (OR-PAM) can achieve high spatial resolution, on the order of optical wavelength, at <1 mm depth in biological tissue (the optical ballistic regime). OR-PAM has been applied successfully to structural and functional imaging of blood vasculature and red blood cells in vivo. Any molecules which absorb sufficient light at certain wavelengths can potentially be imaged by PAM. Compared with pure optical imaging, which typically targets fluorescent markers, label-free PAM avoids the major concerns that the fluorescent labeling probes may disturb the function of biomolecules and may have an insufficient density. This dissertation aims to advance label-free OR-PAM to the subcellular scale.

The first part of this dissertation describes the technological advancement of PAM yielding high spatial resolution in 3D. The lateral resolution was improved by using optical objectives with high numerical apertures for optical focusing. The axial resolution was improved by using broadband ultrasonic transducers for ultrasound detection. We achieved 220 nm lateral resolution in transmission …

Thrombin-Inhibiting Perfluorocarbon Nanoparticles: A New Class Of Therapeutic For Acute Thrombosis Treatment And Diagnosis, Jacob Wheatley Myerson

All Theses and Dissertations (ETDs)

Optimization of the mediation of acute thrombi remains a significant research challenge in the treatment of emergency conditions including heart attack and ischemic stroke. We have demonstrated that a nanoparticle carrying potent direct thrombin inhibitors can advance the treatment of acute thrombosis arising from various cardiovascular pathologies. The thrombin-inhibiting nanoparticles presented herein are designed to focus the antithrombotic impact of direct thrombin inhibitors at the site of thrombus formation and to provide imaging contrast to highlight the formation or the abatement and eventual disintegration of the thrombus.

Perfluorocarbon nanoparticles were functionalized by covalent addition of PPACK or bivalirudin to carboxy-PEG …

Sic For Advanced Biological Applications, Joseph Register

USF Tampa Graduate Theses and Dissertations

Silicon carbide (SiC) has been used for centuries as an industrial abrasive and has been

actively researched since the 1960's as a robust material for power electronic applications.

Despite being the first semiconductor to emit blue light in 1907, it has only recently been

discovered that the material has crucial properties ideal for long-term, implantable biomedical

devices. This is due to the fact that the material offers superior biocompatibility and

hemocompatibility while providing rigid mechanical and chemical stability. In addition, the material

is a wide-bandgap semiconductor that can be used for optoelectronics, light delivery, and optical

sensors, which is the …

Combined Metal-Enhanced Fluorescence-Surface Acoustic Wave (Mef-Saw) Biosensor, Samuel Morrill

USF Tampa Graduate Theses and Dissertations

Immunofluorescence assays are capable of both detecting the amount of a protein and the location of the protein within a cell or tissue section. Unfortunately, the traditional technique is not capable of detecting concentrations on the nanoscale. Also, the technique suffers from non-specific attachment, which can cause false-positives, as well as photobleaching when detecting lower concentrations is attempted. There is also a time constraint problem since the technique can take from many hours to a few days in some cases.

In this work, metal-enhanced fluorescence (MEF) is used to lower the detection limit and reduce photobleaching. Unfortunately, MEF also increases …

An Analysis Of Eye Movements With Helmet Mounted Displays, Kalyn A. Tung

Theses and Dissertations

Helmet or Head-Mounted Displays (HMD) applications have expanded to include a range from advanced military cockpits to consumer glasses. However, users have documented loss of legibility while undergoing vibration. Recent research indicates that undesirable eye movement is related to the vibration frequency a user experiences. In vibrating environments, two competing eye reflexes likely contribute to eye movements. The Vestibulo-ocular Reflex responds to motion sensed in the otoliths while the pursuit reflex is driven by the visual system to maintain the desired image on the fovea. This study attempts to isolate undesirable eye motions that occur while using a HMD by …

Atlas-Guided Volumetric Diffuse Optical Tomography Enhanced By Generalized Linear Model Analysis To Image Risk Decision-Making Responses In Young Adults, Zi-Jing Lin, Lin Li, Mary Cazzell, Hanli Liu

Bioengineering Faculty Publications - Archive

No abstract provided.

Application Of Sub-Micrometer Vibrations To Mitigate Bacterial Adhesion, Will R. Paces, Hal Holmes, Eli Vlaisavljevich, Katherine L. Snyder, Ee Lim Tan, Rupak Rajachar, Keat Ghee Ong

Michigan Tech Publications, Part 1

As a prominent concern regarding implantable devices, eliminating the threat of opportunistic bacterial infection represents a significant benefit to both patient health and device function. Current treatment options focus on chemical approaches to negate bacterial adhesion, however, these methods are in some ways limited. The scope of this study was to assess the efficacy of a novel means of modulating bacterial adhesion through the application of vibrations using magnetoelastic materials. Magnetoelastic materials possess unique magnetostrictive property that can convert a magnetic field stimulus into a mechanical deformation. In vitro experiments demonstrated that vibrational loads generated by the magnetoelastic materials significantly …

Assessing Visual Perception Using Behaviour Conditioning In The Rat Model, Patricia Bacala

Rose-Hulman Undergraduate Research Publications

Neural prosthetics aim to restore function to sensory deficits. In the same sense that cochlear implants can restore auditory function, visual neural prosthetics aim to restore visual function. A strain of rats with retinal degeneration are subjects of great interest when exploring the effect of a visual neural prosthetics on visual perception. In this study we explore the rat response to a visual stimulus in normal vision rats through behavior conditioning in the development of a training protocol that will be used to assess visual perception in retinal degenerative rats. We found that autoshaping was a successful method in training …

Quantitative Relaxometry And Diffusion Mri For Lateralization In Mts And Non-Mts Temporal Lobe Epilepsy., Ali R Khan, Maged Goubran, Sandrine De Ribaupierre, Robert R Hammond, Jorge G Burneo, Andrew G Parrent, Terry M Peters

Robarts Imaging Publications

We developed novel methodology for investigating the use of quantitative relaxometry (T1 and T2) and diffusion tensor imaging (DTI) for lateralization in temporal lobe epilepsy. Patients with mesial temporal sclerosis confirmed by pathology (N=8) and non-MTS unilateral temporal lobe epilepsy (N=6) were compared against healthy controls (N=19) using voxel-based analysis restricted to the anterior temporal lobes, and laterality indices for each MRI metric (T1, T2, fractional anisotropy (FA), mean diffusivity, axial and radial diffusivities) were computed based on the proportion of significant voxels on each side. The diffusivity metrics were the most lateralizing MRI metrics in MTS and non-MTS subsets, …

Characterizing Phantom Arteries With Multi-Channel Laser Ultrasonics And Photo-Acoustics, Jami L. Johnson, Kasper Van Wijk, Michelle Sabick

Mechanical and Biomedical Engineering Faculty Publications and Presentations

Multi-channel photo-acoustic and laser ultrasonic waves are used to sense the characteristics of proxies for healthy and diseased vessels. The acquisition system is non-contacting and non-invasive with a pulsed laser source and a laser vibrometer detector. As the wave signatures of our targets are typically low in amplitude, we exploit multi-channel acquisition and processing techniques. These are commonly used in seismology to improve the signal-to-noise ratio of data. We identify vessel proxies with a diameter on the order of 1 mm, at a depth of 18 mm. Variations in scattered and photo-acoustic signatures are related to differences in vessel wall …

Comparison Of Adaptive Optics Scanning Light Ophthalmoscopic Fluorescein Angiography And Offset Pinhole Imaging, Toco Y.P. Chui, Michael Dubow, Alexander Pinhas, Nishit Shah, Alexander Gan, Rishard Weitz, Yusufu N. Sulai, Alfredo Dubra, Richard B. Rosen

Biomedical Engineering Faculty Research and Publications

Recent advances to the adaptive optics scanning light ophthalmoscope (AOSLO) have enabled finer in vivo assessment of the human retinal microvasculature. AOSLO confocal reflectance imaging has been coupled with oral fluorescein angiography (FA), enabling simultaneous acquisition of structural and perfusion images. AOSLO offset pinhole (OP) imaging combined with motion contrast post-processing techniques, are able to create a similar set of structural and perfusion images without the use of exogenous contrast agent. In this study, we evaluate the similarities and differences of the structural and perfusion images obtained by either method, in healthy control subjects and in patients with retinal vasculopathy …

Diffuse Reflectance Spectroscopy Of Epithelial Tissue With A Smart Fiber-Optic Probe, Bing Yu, Amy Shah, Vivek K. Nagarajan, Daron G. Ferris

Biomedical Engineering Faculty Research and Publications

Diffuse reflectance spectroscopy (DRS) with a fiber-optic probe can noninvasively quantify the optical properties of epithelial tissues and has shown the potential as a cost-effective, fast and sensitive tool for diagnosis of early precancerous changes in the cervix and oral cavity. However, current DRS systems are susceptible to several sources of systematic and random errors, such as uncontrolled probe-to-tissue pressure and lack of a real-time calibration that can significantly impair the measurement accuracy, reliability and validity of this technology as well as its clinical utility. In addition, such systems use bulky, high power and expensive optical components which impede their …

Classification Of Human Retinal Microaneurysms Using Adaptive Optics Scanning Light Ophthalmoscope Fluorescein Angiography, Michael Dubow, Alexander Pinhas, Nishit Shah, Robert F. Cooper, Alexander Gan, Ronald C. Gentile, Vernon Hendrix, Yusufu N. Sulai, Joseph Carroll, Toco Y.P. Chui, Joseph B. Walsh, Rishard Weitz, Alfredo Dubra, Richard B. Rosen

Biomedical Engineering Faculty Research and Publications

Purpose.

Microaneurysms (MAs) are considered a hallmark of retinal vascular disease, yet what little is known about them is mostly based upon histology, not clinical observation. Here, we use the recently developed adaptive optics scanning light ophthalmoscope (AOSLO) fluorescein angiography (FA) to image human MAs in vivo and to expand on previously described MA morphologic classification schemes.

Methods.

Patients with vascular retinopathies (diabetic, hypertensive, and branch and central retinal vein occlusion) were imaged with reflectance AOSLO and AOSLO FA. Ninety-three MAs, from 14 eyes, were imaged and classified according to appearance into six morphologic groups: focal bulge, saccular, fusiform, mixed, …

Isoflurane Modulates Cardiac Mitochondrial Bioenergetics By Selectively Attenuating Respiratory Complexes, Bhawana Agarwal, Ranjan K. Dash, David F. Stowe, Zeljko J. Bosnjak, Amadou K.S. Camara

Biomedical Engineering Faculty Research and Publications

Mitochondrial dysfunction contributes to cardiac ischemia–reperfusion (IR) injury but volatile anesthetics (VA) may alter mitochondrial function to trigger cardioprotection. We hypothesized that the VA isoflurane (ISO) mediates cardioprotection in part by altering the function of several respiratory and transport proteins involved in oxidative phosphorylation (OxPhos). To test this we used fluorescence spectrophotometry to measure the effects of ISO (0, 0.5, 1, 2 mM) on the time-course of interlinked mitochondrial bioenergetic variables during states 2, 3 and 4 respiration in the presence of either complex I substrate K⁺-pyruvate/malate (PM) or complex II substrate K⁺-succinate (SUC) at physiological …

Hemocompatibility Comparison Of Biomedical Grade Polymers Using Rabbit Thrombogenicity Model For Preparing Nonthrombogenic Nitric Oxide Releasing Surfaces, Hitesh Handa, Terry C. Major, Elizabeth Brisbois, Kagya Amoako, Mark E. Meyerhoff, Robert E. Bartlett

Mechanical and Industrial Engineering Faculty Publications

Nitric oxide (NO) is an endogenous vasodilator as well as natural inhibitor of platelet adhesion/ activation. Nitric oxide releasing (NOrel) materials can be prepared by doping an NO donor species, such as diazeniumdiolated dibutylhexanediamine (DBHD/N2O2), within a polymer coating. The inherent hemocompatibility properties of the base polymer can also influence the efficiency of such NO release coatings. In this study, four biomedical grade polymers were evaluated in a 4 h rabbit model of thrombogenicity for their effects on extracorporeal circuit thrombus formation and circulating platelet count. At the end of 4 h, Elast-Eon E2As was found to preserve 58% of …

Elucidation Of Emergent Regional Mechanisms Of Heart Muscle Dysfunction In The Mouse Model Of Duchenne Muscular Dystrophy, Ya-Jian Cheng

All Theses and Dissertations (ETDs)

Cardiac dysfunction is a primary cause of mortality in Duchenne Muscular Dystrophy (DMD), potentially related to elevated cytosolic calcium. However, the regional versus global functional consequences of cellular calcium mishandling have not been defined in the whole heart. Here, we elucidate, for the first time, loci- and age-dependencies between calcium mishandling and myocardial sheet function as a manifestation of dystrophin-deficient cardiomyopathy. We also map calcium transients to illustrate the regional dependence of ion flux disturbances in the dystrophin-deficient (mdx) mouse heart. Furthermore, we elucidate abnormalities in autophagic processes that can be corrected with nanoparticle therapeutics delivering rapamycin to heart tissues …

An Injectable, Calcium Responsive Composite Hydrogel For The Treatment Of Acute Spinal Cord Injury, Christopher A. Mckay, Rebecca D. Pomrenke, Joshua S. Mclane, Nicholas J. Schaub, Elise K. Desimone, Lee A. Ligon, Ryan J. Gilbert

Chemical and Biochemical Engineering Faculty Research & Creative Works

Immediately following spinal cord injury, further injury can occur through several secondary injury cascades. As a consequence of cell lysis, an increase in extracellular Ca²⁺ results in additional neuronal loss by inducing apoptosis. Thus, hydrogels that reduce extracellular Ca²⁺ concentration may reduce secondary injury severity. The goal of this study was to develop composite hydrogels consisting of alginate, chitosan, and genipin that interact with extracellular Ca²⁺ to enable in situ gelation while maintaining an elastic modulus similar to native spinal cord (∼1000 Pa). It was hypothesized that incorporation of genipin and chitosan would regulate hydrogel electrostatic characteristics …

Enhanced Glt-1 Mediated Glutamate Uptake And Migration Of Primary Astrocytes Directed By Fibronectin-Coated Electrospun Poly-L-Lactic Acid Fibers, Jonathan M. Zuidema, María C. Hyzinski-García, Kristien Van Vlasselaer, Nicholas W. Zaccor, George E. Plopper, Alexander A. Mongin, Ryan J. Gilbert

Chemical and Biochemical Engineering Faculty Research & Creative Works

Bioengineered fiber substrates are increasingly studied as a means to promote regeneration and remodeling in the injured central nervous system (CNS). Previous reports largely focused on the ability of oriented scaffolds to bridge injured regions and direct outgrowth of axonal projections. In the present work, we explored the effects of electro spun microfibers on the migration and physiological properties of brain astroglial cells. Primary rat astrocytes were cultured on either fibronectin-coated poly-l-lactic acid (PLLA) films, fibronectin-coated randomly oriented PLLA electro spun fibers, or fibronectin-coated aligned PLLA electro spun fibers. Aligned PLLA fibers strongly altered astrocytic morphology, orienting cell processes, actin …

Modulation Of Leukocyte Infiltration And Phenotype In Microporous Tissue Engineering Scaffolds Via Vector Induced Il-10 Expression, R. Michael Gower, Ryan M. Boehler, Samira M. Azarin, Christine F. Ricci, Joshua N. Leonard, Lonnie D. Shea

Faculty Publications

Biomaterial scaffolds are central to many tissue engineering strategies as they create a space for tissue growth and provide a support for cell adhesion and migration. However, biomaterial implantation results in unavoidable injury resulting in an inflammatory response, which can impair integration with the host and tissue regeneration. Toward the goal of reducing inflammation, we investigated the hypothesis that a lentiviral gene therapy-based approach to localized and sustained IL-10 expression at a scaffold could modulate the number, relative proportions, and cytokine production of infiltrating leukocyte populations. Flow cytometry was used to quantify infiltration of six leukocyte populations for 21 days …

Design Of Controlled Environment For Tissue Engineering, Malcolm Gerald Lapera

Master's Theses

Design of Controlled Environment for Tissue Engineering

Malcolm Lapera

Tissue engineering aims at relieving the need for donor tissue and organs by developing a process of creating viable tissues in the laboratory setting. With over 120,000 people awaiting a transplant, the need for generating tissue engineered organs is very large [3]. In order for organs to be engineered, a few issues need to be overcome. A work space that both creates an environment which maintains cell viability over an extended period of time as well as accommodates the necessary fabrication equipment will be needed to further tissue engineering research. Therefore, …

Utilizing Fast Spin Echo Mri To Reduce Image Artifacts And Improve Implant/Tissue Interface Detection In Refractory Parkinson’S Patients With Deep Brain Stimulators, Subhendra N. Sarkar, Pooja R. Sarkar, Efstathios Papavassiliou, Rafael Rojas

Publications and Research

Introduction. In medically refractory Parkinson’s disease (PD) deep-brain stimulation (DBS) is an effective therapeutic tool. Postimplantation MRI is important in assessing tissue damage and DBS lead placement accuracy. We wanted to identify which MRI sequence can detectDBS leads with smallest artifactual signal void, allowing better tissue/electrode edge conspicuity.

Methods. Using an IRB approved protocol 8 advanced PDpatientswere imagedwithinMRconditional safety guidelines at lowRF power (SAR ≤ 0.1 W/kg) in coronal plane at 1.5T by various sequences.The image slices were subjectively evaluated for diagnostic quality and the lead contact diameters were compared to identify a sequence least affected by metallic leads.

Results …

A Lensing Effect Of Inner Retinal Cysts On Images Of The Photoreceptor Mosaic, Christopher S. Langlo, John A. Flatter, Alfredo Dubra, William J. Wirostko, Joseph Carroll

Biomedical Engineering Faculty Research and Publications

No abstract provided.

Rate Alterable Traumatic Brain Injury Device For Rodent Models, Radia Abdul Wahab

Dissertations

Traumatic Brain Injury (TBI) is a physical impact to the head resulting in functional deficits in memory and motor systems. TBI is a prevalent problem occurring in 1.7 million people annually in the United States (Faul et al. 2010). TBIs can differ greatly in terms of the biomechanics of the impact such as magnitude, direction and rate. Indeed, it is likely that the wide range of TBI outcomes may be due to the physical characteristics of the trauma. Studies to date on impact have used injury devices with limited alterable parameters. Therefore, the existing impact studies have considered the effect …

The Effect Of Mechanical Vestibular Stimulation On Muscle Tone And Spasticity In Individuals With Neurological Impairment, Ghaith J. Androwis

Dissertations

In the desire to better understand spasticity mainly in Cerebral Palsy (CP) and to examine vestibular stimulation as a future intervention for .muscle tone reduction, and to be able to describe the change in level of spasticity in subjects with disability and describe interventions effects, a series of experiments are done on children with spasticity. In addition to understanding the otoliths in the vestibular system and their projections, properties and pathways a more important major objective of this work is to validate the changes in otoliths signal caused by vestibular stimulation based on the Equilibrium Point Hypothesis and the inclusion …

Construction And Assessment Of A Computer Graphics-Based Model For Wheelchair Propulsion, Brooke Marie Odle

Dissertations

Upper limb overuse injuries are common in manual wheelchair using persons with spinal cord injury (SCI), especially those with tetraplegia. Biomechanical analyses involving kinetics, kinematics, and muscle mechanics provide an opportunity to identify modifiable risk factors associated with wheelchair propulsion and upper limb overuse injuries that may be used toward developing prevention and treatment interventions. However, these analyses are limited because they cannot estimate muscle forces in vivo. Patient-specific computer graphics-based models have enhanced biomechanical analyses by determining in vivo estimates of shoulder muscle and joint contact forces. Current models do not include deep shoulder muscles. Also, patient-specific models …

Developing A Labview Based Thermally Stimulated Current (Tsc) Controller To Measure Residual Charge In Electrospinning, Jai Abhishekh Veezhinathan

Theses

Electrospinning is an electrohydrodynamic process for the fabrication of nanofibers which are widely used in therapeutical tissue engineering approaches. It utilizes the potential difference of an electrostatic field to overcome the surface tension of the polymer solution to extrude a fine jet of fluid which deposits on the grounded collector as a nanofiber mat. Using this process, nanofibers with diameters less than a micron can be produced.

Previous studies have shown the presence of residual charge in electrospun nanofibers. The presence and decay of residual charge during cell culture media is still unknown. In an attempt to clarify the presence …

Using The Piezoelectric Backscatter Signal For Remote Sensing Of Neural Signals, Eren Alay

Theses

In recent studies, various methods to sense neural signals are used and new methods for remote sensing of neural signals are being developed. However, there are still major difficulties in building long-term implantable neural interface systems that can reliably record neural activity and serve as the basis of brain-machine interfaces (BMI). Therefore, this research is conducted to design a remote neural sensing system that is based on modulation of the backscatter signal from a piezoelectric element by the neural signals. The hypothesis is that if the neural signal is detected with a simple amplifier and the output of this amplifier …

In Vitro Modeling And Analysis Of Axon Stretch Growth For The Sustained Growth Of Long Nerve Fibers, Joseph Rocco Loverde

Dissertations

The integration of long nerve fibers throughout the body is distinctive among somatic tissues. Single, individual motor neurons grow to a meter in length or more as they maintain connectivity with sacral areas of the spinal cord from the brain. Similarly, homologous growth also occurs via spinal ganglion neurons within the peripheral nervous system. The most widely studied aspect of nerve development has been the migration and extension of growth cones towards synaptic targets during early development. However, following growth cone extension, axonal fibers continue to grow in synchrony with the expansion of limbs and mit otic tissues throughout childhood …