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2019

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Janus Kinase 1 Is Required For Transcriptional Reprograming Of Murine Astrocytes In Response To Endoplasmic Reticulum Stress, Savannah G. Sims, Gordon P. Meares Jan 2019

Janus Kinase 1 Is Required For Transcriptional Reprograming Of Murine Astrocytes In Response To Endoplasmic Reticulum Stress, Savannah G. Sims, Gordon P. Meares

Faculty & Staff Scholarship

Neurodegenerative diseases are associated with the accumulation of misfolded proteins in the endoplasmic reticulum (ER), leading to ER stress. To adapt, cells initiate the unfolded protein response (UPR). However, severe or unresolved UPR activation leads to cell death and inflammation. The UPR is initiated, in part, by the transER membrane kinase PKR-like ER kinase (PERK). Recent evidence indicates ER stress and inflammation are linked, and we have shown that this involves PERKdependent signaling via Janus Kinase (JAK) 1. This signaling provokes the production of soluble inflammatory mediators such as interleukin-6 (IL-6) and chemokine C-C motif ligand 2 (CCL2). We, therefore, …

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Endoplasmic Reticulum Stress Differentially Modulates The Il-6 Family Of Cytokines In Murine Astrocytes And Macrophages, Cristina L. Sanchez, Savnnah G. Sims, John D. Nowery, Gordon P. Meares Jan 2019

Endoplasmic Reticulum Stress Differentially Modulates The Il-6 Family Of Cytokines In Murine Astrocytes And Macrophages, Cristina L. Sanchez, Savnnah G. Sims, John D. Nowery, Gordon P. Meares

Faculty & Staff Scholarship

In many diseases, misfolded proteins accumulate within the endoplasmic reticulum (ER), leading to ER stress. In response, the cell initiates the unfolded protein response (UPR) to reestablish homeostasis. Additionally, in response to ER stress, various cell types mount an inflammatory response involving interleukin (IL)-6. While IL-6 has been widely studied, the impact of ER stress on other members of the IL-6 cytokine family, including oncostatin (OSM), IL-11, ciliary neurotrophic factor (CNTF), and leukemia inhibitor factor (LIF) remains to be elucidated. Here, we have examined the expression of the IL-6 family cytokines in response to pharmacologically-induced ER stress in astrocytes and …

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Mitsui-7,Heat-Treated, And Nitrogen-Doped Multi-Walled Carbon Nanotubes Elicit Genotoxicity In Human Lung Epithelial Cells, Katelyn J. Siegrist, Steven H. Reynolds, Dale W. Porter, Robert R. Mercer, Allison K. Bauer, David Lowry, Lorenzo Cena, Todd A. Stueckle, Michael L. Kashon, John Wiley, Jeffrey L. Salisbury, John Mastovich, Kristin Bunker, Mark Sparrow, Jason S. Lupoi, Aleksandr B. Stefaniak, Michael J. Keane, Shuji Tsuruoka, Mauricio Terrones, Michael Mccawley, Linda M. Sargent Jan 2019

Mitsui-7,Heat-Treated, And Nitrogen-Doped Multi-Walled Carbon Nanotubes Elicit Genotoxicity In Human Lung Epithelial Cells, Katelyn J. Siegrist, Steven H. Reynolds, Dale W. Porter, Robert R. Mercer, Allison K. Bauer, David Lowry, Lorenzo Cena, Todd A. Stueckle, Michael L. Kashon, John Wiley, Jeffrey L. Salisbury, John Mastovich, Kristin Bunker, Mark Sparrow, Jason S. Lupoi, Aleksandr B. Stefaniak, Michael J. Keane, Shuji Tsuruoka, Mauricio Terrones, Michael Mccawley, Linda M. Sargent

Faculty & Staff Scholarship

The unique physicochemical properties of multi-walled carbon nanotubes (MWCNT) have led to many industrial applications. Due to their low density and small size, MWCNT are easily aerosolized in the workplace making respiratory exposures likely in workers. The International Agency for Research on Cancer designated the pristine Mitsui-7 MWCNT (MWCNT-7) as a Group 2B carcinogen, but there was insufficient data to classify all other MWCNT. Previously, MWCNT exposed to high temperature (MWCNT-HT) or synthesized with nitrogen (MWCNT-ND) have been found to elicit attenuated toxicity; however, their genotoxic and carcinogenic potential are not known. Our aim was to measure the genotoxicity of …

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Finding New Cell Wall Regulatory Genes In Populus Trichocarpa Using Multiple Lines Of Evidence, Anna Furches, David Kainer, Deborah Weighill, Annabel Large, Piet Jones, Angelica M. Walker, Jonathon Romero, Joao Gabriel Felipe Machado Gazolla, Wayne Joubert, Manesh Shah, Jared Streich, Priya Ranjan, Jeremy Schmutz, Avinash Sreedasayam, David Macaya-Sanz, Nan Zhao, Madhavi Z. Martin, Xiaolan Rao, Richard A. Dixon, Stephen Difazio, Timothy J. Tschaplinski, Jin-Giu Chen, Gerald A. Tuskan, Daniel Jacobson Jan 2019

Finding New Cell Wall Regulatory Genes In Populus Trichocarpa Using Multiple Lines Of Evidence, Anna Furches, David Kainer, Deborah Weighill, Annabel Large, Piet Jones, Angelica M. Walker, Jonathon Romero, Joao Gabriel Felipe Machado Gazolla, Wayne Joubert, Manesh Shah, Jared Streich, Priya Ranjan, Jeremy Schmutz, Avinash Sreedasayam, David Macaya-Sanz, Nan Zhao, Madhavi Z. Martin, Xiaolan Rao, Richard A. Dixon, Stephen Difazio, Timothy J. Tschaplinski, Jin-Giu Chen, Gerald A. Tuskan, Daniel Jacobson

Faculty & Staff Scholarship

Understanding the regulatory network controlling cell wall biosynthesis is of great interest in Populus trichocarpa, both because of its status as a model woody perennial and its importance for lignocellulosic products. We searched for genes with putatively unknown roles in regulating cell wall biosynthesis using an extended network-based Lines of Evidence (LOE) pipeline to combine multiple omics data sets in P. trichocarpa, including gene coexpression, gene comethylation, population level pairwise SNP correlations, and two distinct SNP-metabolite Genome Wide Association Study (GWAS) layers. By incorporating validation, ranking, and filtering approaches we produced a list of nine high priority gene candidates for …

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Intranasal Acellular Pertussis Vaccine Provides Mucosal Immunity And Protects Mice From Bordetella Pertussis, Dylan T. Boehm, M. Allison Wolf, Jesse M. Hall, Ting Y. Wong, Emel Sen-Kilic, Hayden D. Basinger, Sebastian A. Dziadowicz, Maria De La Paz Gutierrez, Catherine B. Blackwood, Shelby D. Bradford, Katherine A. Begley, William T. Witt, Melinda E. Varney, Mariette Barbier, F. Heath Damron Jan 2019

Intranasal Acellular Pertussis Vaccine Provides Mucosal Immunity And Protects Mice From Bordetella Pertussis, Dylan T. Boehm, M. Allison Wolf, Jesse M. Hall, Ting Y. Wong, Emel Sen-Kilic, Hayden D. Basinger, Sebastian A. Dziadowicz, Maria De La Paz Gutierrez, Catherine B. Blackwood, Shelby D. Bradford, Katherine A. Begley, William T. Witt, Melinda E. Varney, Mariette Barbier, F. Heath Damron

Faculty & Staff Scholarship

Current acellular pertussis vaccines fall short of optimal protection against the human respiratory pathogen Bordetella pertussis resulting in increased incidence of a previously controlled vaccine- preventable disease. Natural infection is known to induce a protective mucosal immunity. Therefore, in this study, we aimed to use acellular pertussis vaccines to recapitulate these mucosal immune responses. We utilized a murine immunization and challenge model to characterize the efficacy of intranasal immunization (IN) with DTaP vaccine or DTaP vaccine supplemented with curdlan, a known Th1/Th17 promoting adjuvant. Protection from IN delivered DTaP was compared to protection mediated by intraperitoneal injection of DTaP and …

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Dietary Quercetin And Kaempferol: Bioavailability And Potential Cardiovascular-Related Bioactivity In Humans, Wijdan M. Dabeek, Melissa Ventura Marra Jan 2019

Dietary Quercetin And Kaempferol: Bioavailability And Potential Cardiovascular-Related Bioactivity In Humans, Wijdan M. Dabeek, Melissa Ventura Marra

Faculty & Staff Scholarship

Fruit and vegetable intake has been associated with a reduced risk of cardiovascular disease. Quercetin and kaempferol are among the most ubiquitous polyphenols in fruit and vegetables. Most of the quercetin and kaempferol in plants is attached to sugar moieties rather than in the free form. The types and attachments of sugars impact bioavailability, and thus bioactivity. This article aims to review the current literature on the bioavailability of quercetin and kaempferol from food sources and evaluate the potential cardiovascular effects in humans. Foods with the highest concentrations of quercetin and kaempferol in plants are not necessarily the most bioavailable …

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Fancd2-Deficient Hematopoietic Stem And Progenitor Cells Depend On Augmented Mitochondrial Translation For Survival And Proliferation, Srinivas Chatla, Wei Du, Andrew F. Wilson, Amom Ruhikanta Meetei, Qishen Pang Jan 2019

Fancd2-Deficient Hematopoietic Stem And Progenitor Cells Depend On Augmented Mitochondrial Translation For Survival And Proliferation, Srinivas Chatla, Wei Du, Andrew F. Wilson, Amom Ruhikanta Meetei, Qishen Pang

Faculty & Staff Scholarship

Members of the Fanconi anemia (FA) protein family are involved in multiple cellular processes including response to DNA damage and oxidative stress. Here we show that a major FA protein, Fancd2, plays a role in mitochondrial biosynthesis through regulation of mitochondrial translation. Fancd2 interacts with Atad3 and Tufm, which are among the most frequently identified components of the mitochondrial nucleoid complex essential for mitochondrion biosynthesis. Deletion of Fancd2 in mouse hematopoietic stem and progenitor cells (HSPCs) leads to increase in mitochondrial number, and enzyme activity of mitochondrion-encoded respiratory complexes. Fancd2 deficiency increases mitochondrial protein synthesis and induces mitonuclear protein imbalance. …

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The Patient Selection Criteria For Veno-Arterial Extracorporeal Mechanical Oxygenation, Sandeep Banga, Abhiram Challa, Avani R. Patel, Shantanu Singh, Vamsi K. Emani Jan 2019

The Patient Selection Criteria For Veno-Arterial Extracorporeal Mechanical Oxygenation, Sandeep Banga, Abhiram Challa, Avani R. Patel, Shantanu Singh, Vamsi K. Emani

Faculty & Staff Scholarship

Veno-arterial extracorporeal membrane oxygenation (VA-ECMO) plays a crucial role in the management of patients with refractory cardiac and pulmonary dysfunction by providing temporary mechanical hemodynamic and respiratory support. However, the paucity of guidelines on indications for administering it and the failure to timely initiate VA-ECMO often result in a high in-hospital mortality rate and poor six-month outcomes after VA-ECMO deployment. Due to ethical issues, randomized controlled studies with VA-ECMO have not been conducted so that no recommended evidence-based guidelines exist for VA-ECMO patientselection criteria. Therefore, the indication for administering the device depends solely on expert opinion after reviewing the literature. …

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Artificial Intelligence: Practical Primer For Clinical Research In Cardiovascular Disease, Nobuyuki Kagiyama, Sirish Shrestha, Peter D. Farjo, Partho P. Sengupta Jan 2019

Artificial Intelligence: Practical Primer For Clinical Research In Cardiovascular Disease, Nobuyuki Kagiyama, Sirish Shrestha, Peter D. Farjo, Partho P. Sengupta

Faculty & Staff Scholarship

No abstract provided.

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Local Synaptic Inputs Support Opposing, Network-Specific Odor Representations In A Widely Projecting Modulatory Neuron, Xiaonan Zhang, Kaylynn Coates, Andrew Dacks, Cengiz Günay, J. Scott Lauritzen, Feng Li, Steven A. Calle-Schuler, Davi Bock, Quentin Gaudry Jan 2019

Local Synaptic Inputs Support Opposing, Network-Specific Odor Representations In A Widely Projecting Modulatory Neuron, Xiaonan Zhang, Kaylynn Coates, Andrew Dacks, Cengiz Günay, J. Scott Lauritzen, Feng Li, Steven A. Calle-Schuler, Davi Bock, Quentin Gaudry

Faculty & Staff Scholarship

Serotonin plays different roles across networks within the same sensory modality. Previously, we used whole-cell electrophysiology in Drosophila to show that serotonergic neurons innervating the first olfactory relay are inhibited by odorants (Zhang and Gaudry, 2016). Here we show that network-spanning serotonergic neurons segregate information about stimulus features, odor intensity and identity, by using opposing coding schemes in different olfactory neuropil. A pair of serotonergic neurons (the CSDns) innervate the antennal lobe and lateral horn, which are first and second order neuropils. CSDn processes in the antennal lobe are inhibited by odors in an identity independent manner. In the lateral …

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Observed Mesoscale Hydroclimate Variability Of North America’S Allegheny Mountains At 40.2° N, Evan Kutta, Jason Hubbart Jan 2019

Observed Mesoscale Hydroclimate Variability Of North America’S Allegheny Mountains At 40.2° N, Evan Kutta, Jason Hubbart

Faculty & Staff Scholarship

Spatial hydroclimatic variability of Eastern North America’s Allegheny Mountain System (AMS) is commonly oversimplified to elevation differences and the rain-shadow effect. Descriptive and higher order statistical properties of hourly meteorological observations (1948–2017) from seven airports were analyzed to better understand AMS climatic complexity. Airports were located along a longitudinal transect (40.2 °N) and observation infrastructure was positioned to minimize climatic gradients associated with insolation, slope, and aspect. Results indicated average ambient temperature was well correlated with airport elevation (R2 = 0.97). However, elevation was relatively poorly correlated to dew point temperature (R2 = 0.80) and vapor pressure deficit (R2 = …

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Nutritional Condition And Physiological Stress Levels Of Elk In The Black Hills, South Dakota, Chadwick P. Lehman, Christopher T. Rota, Joshua J. Millspaugh Jan 2019

Nutritional Condition And Physiological Stress Levels Of Elk In The Black Hills, South Dakota, Chadwick P. Lehman, Christopher T. Rota, Joshua J. Millspaugh

Faculty & Staff Scholarship

Percent of body fat and physiological stress are important correlates to wildlife demographics. We studied winter percent of body fat and physiological stress levels for a declining elk (Cervus canadensis nelsoni) population in South Dakota, 2011–2013. We obtained percent of winter body fat, pregnancy status, lactation status, and physiological stress data from 58 adult females (2+ years old). We compared physiological stress level data from 2011 with data collected from this same herd when elk densities were much higher (1995–1997). Our objectives were to determine percent of body fat during winter, examine if winter body fat was correlated with pregnancy …

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Student And Faculty Perceptions: Appropriate Consequences Of Lapses In Academic Integrity In Health Sciences Education, Tianna Antill Keener, Marina Galvez Peralta, Melinda Smith, Lauren Swager, James Ingles, Sijin Wen, Mariette Barbier Jan 2019

Student And Faculty Perceptions: Appropriate Consequences Of Lapses In Academic Integrity In Health Sciences Education, Tianna Antill Keener, Marina Galvez Peralta, Melinda Smith, Lauren Swager, James Ingles, Sijin Wen, Mariette Barbier

Faculty & Staff Scholarship

Background: A breadth of evidence supports that academic dishonesty is prevalent among higher education students, including students in health sciences educational programs. Research suggest individuals who engage in academic dishonesty may continue to exhibit unethical behaviors in professional practice. Thus, it is imperative to appropriately address lapses in academic dishonesty among health sciences students to ensure the future safety of patients. However, students and faculty have varying perceptions of what constitutes academic dishonesty and the seriousness of breaches in academic dishonesty. The purpose of this study is to gain health sciences faculty and students’ perceptions on the appropriate consequences of …

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Integrated Pest Management Of Longan (Sapindales: Sapindaceae) In Vietnam, Hanh Tran, Hoa Nguyen Van, Rangaswamy Muniappan, James Amrine, Rayapati Naidu, Robert Cilbertson, Jaspreet Sidhu Jan 2019

Integrated Pest Management Of Longan (Sapindales: Sapindaceae) In Vietnam, Hanh Tran, Hoa Nguyen Van, Rangaswamy Muniappan, James Amrine, Rayapati Naidu, Robert Cilbertson, Jaspreet Sidhu

Faculty & Staff Scholarship

This paper describes the current state of pests and diseases of longan (Dimocarpus longan Lour.) and their management in Vietnam. Longan is the third most cultivated fruit crop and second major fruit crop exported from Vietnam. Brief descriptions of arthropod pests Eriophyes dimocarpi Kuang (Acari: Eriophyidae), Conogethes punctiferalis Guenée (Lepidoptera: Crambidae), Conopomorpha sinensis Bradley (Lepidoptera: Gracillariidae), Conopomorpha litchiella Bradley (Lepidoptera: Gracillariidae), Tessaratoma papillosa Drury (Hemiptera: Tessaratomidae), Eudocima phalonia L. comb. (Lepidoptera: Erebidae), oriental fruit fly Bactrocera dorsalis Hendel (Diptera: Tephretidae), Planococcus lilacinus Cockerell (Hemiptera: Pseudococcidae), Drepanococcus chiton Green (Hemiptera: Coccidae), and Cornegenapsylla sinica Yang & Li (Hemiptera: Psyllidae) and fungal …

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Differences In Sodium Channel Densities In The Apical Dendrites Of Pyramidal Cells Of The Electrosensory Lateral Line Lobe, Sree I. Motipally, Kathryne M. Allen, Daniel K. Williamson, Gary Marsat Jan 2019

Differences In Sodium Channel Densities In The Apical Dendrites Of Pyramidal Cells Of The Electrosensory Lateral Line Lobe, Sree I. Motipally, Kathryne M. Allen, Daniel K. Williamson, Gary Marsat

Faculty & Staff Scholarship

Heterogeneity of neural properties within a given neural class is ubiquitous in the nervous system and permits different sub-classes of neurons to specialize for specific purposes. This principle has been thoroughly investigated in the hindbrain of the weakly electric fish A. leptorhynchus in the primary electrosensory area, the Electrosensory Lateral Line lobe (ELL). The pyramidal cells (PCs) that receive inputs from tuberous electroreceptors are organized in three maps in distinct segments of the ELL. The properties of these cells vary greatly across maps due to differences in connectivity, receptor expression, and ion channel composition. These cells are a seminal example …

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Climatic Trends Of West Virginia: A Representative Appalachian Microcosm, Evan Kutta, Jason Hubbart Jan 2019

Climatic Trends Of West Virginia: A Representative Appalachian Microcosm, Evan Kutta, Jason Hubbart

Faculty & Staff Scholarship

During the late 19th and very early 20th centuries widespread deforestation occurred across the Appalachian region, USA. However, since the early 20th century, land cover rapidly changed from predominantly agricultural land use (72%; 1909) to forest. West Virginia (WV) is now the USA’s third most forested state by area (79%; 1989–present). It is well understood that land cover alterations feedback on climate with important implications for ecology, water resources, and watershed management. However, the spatiotemporal distribution of climatic changes during reforestation in WV remains unclear. To fill this knowledge gap, daily maximum temperature, minimum temperature, and precipitation data were acquired …

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Multi-Walled Carbon Nanotube-Induced Gene Expression Biomarkers For Medical And Occupational Surveillance, Brandi N. Snyder-Talkington, Chunlin Dong, Salvi Singh, Rebecca Raese, Yong Qian, Dale W. Porter, Michael G. Wolfarth, Nancy L. Guo Jan 2019

Multi-Walled Carbon Nanotube-Induced Gene Expression Biomarkers For Medical And Occupational Surveillance, Brandi N. Snyder-Talkington, Chunlin Dong, Salvi Singh, Rebecca Raese, Yong Qian, Dale W. Porter, Michael G. Wolfarth, Nancy L. Guo

Faculty & Staff Scholarship

As the demand for multi-walled carbon nanotube (MWCNT) incorporation into industrial and biomedical applications increases, so does the potential for unintentional pulmonary MWCNT exposure, particularly among workers during manufacturing. Pulmonary exposure to MWCNTs raises the potential for development of lung inflammation, fibrosis, and cancer among those exposed; however, there are currently no effective biomarkers for detecting lung fibrosis or predicting the risk of lung cancer resulting from MWCNT exposure. To uncover potential mRNAs and miRNAs that could be used as markers of exposure, this study compared in vivo mRNA and miRNA expression in lung tissue and blood of mice exposed …

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Application Of Mobile Health, Telemedicine And Artificial Intelligence To Echocardiography, Karthik Seetharam, Nobuyuki Kagiyama, Partho P. Sengupta Jan 2019

Application Of Mobile Health, Telemedicine And Artificial Intelligence To Echocardiography, Karthik Seetharam, Nobuyuki Kagiyama, Partho P. Sengupta

Faculty & Staff Scholarship

The intersection of global broadband technology and miniaturized high-capability computing devices has led to a revolution in the delivery of healthcare and the birth of telemedicine and mobile health (mHealth). Rapid advances in handheld imaging devices with other mHealth devices such as smartphone apps and wearable devices are making great strides in the field of cardiovascular imaging like never before. Although these technologies offer a bright promise in cardiovascular imaging, it is far from straightforward. The massive data influx from telemedicine and mHealth including cardiovascular imaging supersedes the existing capabilities of current healthcare system and statistical software. Artificial intelligence with …

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Wavelet-Based Genomic Signal Processing For Centromere Identification And Hypothesis Generation, Deborah Weighill, David Macaua-Sanz, Stephen Paul Difiazio, Wayne Joubert, Manesh Shah, Jeremy Schmutz, Avinash Sreedasyam, Gerald Tuska, Daniel Jacobson Jan 2019

Wavelet-Based Genomic Signal Processing For Centromere Identification And Hypothesis Generation, Deborah Weighill, David Macaua-Sanz, Stephen Paul Difiazio, Wayne Joubert, Manesh Shah, Jeremy Schmutz, Avinash Sreedasyam, Gerald Tuska, Daniel Jacobson

Faculty & Staff Scholarship

Various ‘omics data types have been generated for Populus trichocarpa, each providing a layer of information which can be represented as a density signal across a chromosome. We make use of genome sequence data, variants data across a population as well as methylation data across 10 different tissues, combined with wavelet-based signal processing to perform a comprehensive analysis of the signature of the centromere in these different data signals, and successfully identify putative centromeric regions in P. trichocarpa from these signals. Furthermore, using SNP (single nucleotide polymorphism) correlations across a natural population of P. trichocarpa, we find evidence for the …

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Correction To: Determinant Roles Of Dendritic Cell-Expressed Notch Delta-Like And Jagged Ligands On Anti-Tumor T-Cell Immunity, Elena E. Tchekneva, Mounika U.L. Goruganthu, Roman V. Uzhachenko, Portia L. Thomas, Anneliese Antonucci, Irina Chekneva, Michael Koenig, Longzhu Piao, Anwari Akhter, Maria Teresa P. De Aquino, Paravathi Ranganathan, Nicholas Long, Thomas Magliery, Anna Valujskikh, Jason V. Evans, Rajeswara R. Arasada, Pierre P. Massion, David P. Carbone, Anil Shanker, Mikhail M. Dikov Jan 2019

Correction To: Determinant Roles Of Dendritic Cell-Expressed Notch Delta-Like And Jagged Ligands On Anti-Tumor T-Cell Immunity, Elena E. Tchekneva, Mounika U.L. Goruganthu, Roman V. Uzhachenko, Portia L. Thomas, Anneliese Antonucci, Irina Chekneva, Michael Koenig, Longzhu Piao, Anwari Akhter, Maria Teresa P. De Aquino, Paravathi Ranganathan, Nicholas Long, Thomas Magliery, Anna Valujskikh, Jason V. Evans, Rajeswara R. Arasada, Pierre P. Massion, David P. Carbone, Anil Shanker, Mikhail M. Dikov

Faculty & Staff Scholarship

Background: Notch intercellular communication instructs tissue-specific T-cell development and function. In this study, we explored the roles of dendritic cell (DC)-expressed Notch ligands in the regulation of T-cell effector function. Methods: We generated mice with CD11c lineage-specific deletion of Notch Delta-like ligand (Dll)1 and Jagged (Jag)2. Using these genetically-ablated mice and engineered pharmacological Notch ligand constructs, the roles of various Delta-like and Jagged ligands in the regulation of T-cell-mediated immunity were investigated. We assessed tumor growth, mouse survival, cytokine production, immunophenotyping of myeloid and lymphoid populations infiltrating the tumors, expression of checkpoint molecules and T-cell function in the experimental settings …

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Genome-Wide Association Study Identifies Genomic Loci Affecting Filet Firmness And Protein Content In Rainbow Trout, Ali Ali, Rafet Al-Tobasei, Daniela Lourenco, Tim Leeds, Brett Kenney, Mohamed Saleem Jan 2019

Genome-Wide Association Study Identifies Genomic Loci Affecting Filet Firmness And Protein Content In Rainbow Trout, Ali Ali, Rafet Al-Tobasei, Daniela Lourenco, Tim Leeds, Brett Kenney, Mohamed Saleem

Faculty & Staff Scholarship

Filet quality traits determine consumer satisfaction and affect profitability of the aquaculture industry. Soft flesh is a criterion for fish filet downgrades, resulting in loss of value. Filet firmness is influenced by many factors, including rate of protein turnover. A 50K transcribed gene SNP chip was used to genotype 789 rainbow trout, from two consecutive generations, produced in the USDA/NCCCWA selective breeding program. Weighted single-step GBLUP (WssGBLUP) was used to perform genome-wide association (GWA) analyses to identify quantitative trait loci affecting filet firmness and protein content. Applying genomic sliding windows of 50 adjacent SNPs, 212 and 225 SNPs were associated …

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Bordetella Pertussis Can Be Motile And Express Flagellum-Like Structures, Cassandra L. Hoffman, Laura A. Gonyar, Federico Zacca, Federico Sisti, Julieta Fernandez, Ting Wong, F. Heath Damron, Erik L. Hewlett Jan 2019

Bordetella Pertussis Can Be Motile And Express Flagellum-Like Structures, Cassandra L. Hoffman, Laura A. Gonyar, Federico Zacca, Federico Sisti, Julieta Fernandez, Ting Wong, F. Heath Damron, Erik L. Hewlett

Faculty & Staff Scholarship

ABSTRACT Bordetella bronchiseptica encodes and expresses a flagellar apparatus. In contrast, Bordetella pertussis, the causative agent of whooping cough, has historically been described as a nonmotile and nonflagellated organism. The previous statements that B. pertussis was a nonmotile organism were consistent with a stop codon located in the flagellar biosynthesis gene, flhA, discovered when the B. pertussis Tohama I genome was sequenced and analyzed by Parkhill et al. in 2003 (J. Parkhill, M. Sebaihia, A. Preston, L. D. Murphy, et al., Nat Genet, 35:32– 40, 2003, https://doi.org/10 .1038/ng1227). The stop codon has subsequently been found in all annotated genomes. Parkhill …

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Ancient Polyploidy And Genome Evolution In Palms, Craig F. Barrett, Michael R. Mckain, Brandon T. Sinn, Xue Jun Ge, Yuqu Zhang, Alexandre Antonelli, Christine D. Bacon Jan 2019

Ancient Polyploidy And Genome Evolution In Palms, Craig F. Barrett, Michael R. Mckain, Brandon T. Sinn, Xue Jun Ge, Yuqu Zhang, Alexandre Antonelli, Christine D. Bacon

Faculty & Staff Scholarship

Mechanisms of genome evolution are fundamental to our understanding of adaptation and the generation and maintenance of biodiversity, yet genome dynamics are still poorly characterized in many clades. Strong correlations between variation in genomic attributes and species diversity across the plant tree of life suggest that polyploidy or other mechanisms of genome size change confer selective advantages due to the introduction of genomic novelty. Palms (order Arecales, family Arecaceae) are diverse, widespread, and dominant in tropical ecosystems, yet little is known about genome evolution in this ecologically and economically important clade. Here, we take a phylogenetic comparative approach to investigate …

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Cationic Porphyrins With Large Side Arm Substituents As Resonance Light Scattering Ratiometric Probes For Specific Recognition Of Nucleic Acid G-Quadruplexes, Li-Ming Zhang, Yun-Xi Cui, Li-Na Zhu, Jun-Qing Chu, De-Ming Kong Jan 2019

Cationic Porphyrins With Large Side Arm Substituents As Resonance Light Scattering Ratiometric Probes For Specific Recognition Of Nucleic Acid G-Quadruplexes, Li-Ming Zhang, Yun-Xi Cui, Li-Na Zhu, Jun-Qing Chu, De-Ming Kong

Faculty & Staff Scholarship

Specific G-quadruplex-probing is crucial for both biological sciences and biosensing applications. Most reported probes are focused on fluorescent or colorimetric recognition of G-quadruplexes. Herein, for the first time, we reported a new specific G-quadruplex-probing technique—resonance light scattering (RLS)-based ratiometric recognition. To achieve the RLS probing of G-quadruplexes in the important physiological pH range of 7.4-6.0, four water soluble cationic porphyrin derivatives, including an unreported octa-cationic porphyrin, with large side arm substituents were synthesized and developed as RLS probes. These RLS probes were demonstrated to work well for ratiometric recognition of G-quadruplexes with high specificity against single- and double-stranded DNAs, including …

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Esophageal Crohn's Disease Unresponsive To Glucocorticoids, Tanureet Kochar, Matthew Krafft, Swapna Gayam Jan 2019

Esophageal Crohn's Disease Unresponsive To Glucocorticoids, Tanureet Kochar, Matthew Krafft, Swapna Gayam

Faculty & Staff Scholarship

No abstract provided.

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The Identification Of Differentially Expressed Genes Between Extremes Of Placental Efficiency In Maternal Line Gilts On Day 95 Of Gestation, Shanice K. Krombeen, Vijay Shankar, Rooksana E. Noorai, Christopher A. Saski, Julia L. Sharp, Matthew E. Wilson, Tiffany A. Wilmoth Jan 2019

The Identification Of Differentially Expressed Genes Between Extremes Of Placental Efficiency In Maternal Line Gilts On Day 95 Of Gestation, Shanice K. Krombeen, Vijay Shankar, Rooksana E. Noorai, Christopher A. Saski, Julia L. Sharp, Matthew E. Wilson, Tiffany A. Wilmoth

Faculty & Staff Scholarship

Background: Placental efficiency (PE) describes the relationship between placental and fetal weights (fetal wt/placental wt). Within litters, PE can vary drastically, resulting in similarly sized pigs associated with differently sized placentas, up to a 25% weight difference. However, the mechanisms enabling the smaller placenta to grow a comparable littermate are unknown. To elucidate potential mechanisms, morphological measurements and gene expression profiles in placental and associated endometrial tissues of high PE and low PE feto-placental units were compared. Tissue samples were obtained from eight maternal line gilts during gestational day 95 ovario-hysterectomies. RNA was extracted from tissues of feto-placental units with …

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Micrornas And The Genetic Nexus Of Brain Aging, Neuroinflammation, Neurodegeneration, And Brain Trauma, Saumyendra N. Sarkar, Ashley E. Russell, Russell Elizabeth B. Engler-Chiurazzi, Keyana N. Porter, James W. Simpkins Jan 2019

Micrornas And The Genetic Nexus Of Brain Aging, Neuroinflammation, Neurodegeneration, And Brain Trauma, Saumyendra N. Sarkar, Ashley E. Russell, Russell Elizabeth B. Engler-Chiurazzi, Keyana N. Porter, James W. Simpkins

Faculty & Staff Scholarship

ABSTRACT: Aging is a complex and integrated gradual deterioration of cellular activities in specific organs of the body, which is associated with increased mortality. This deterioration is the primary risk factor for major human pathologies, including cancer, diabetes, cardiovascular disorders, neurovascular disorders, and neurodegenerative diseases. There are nine tentative hallmarks of aging. In addition, several of these hallmarks are increasingly being associated with acute brain injury conditions. In this review, we consider the genes and their functional pathways involved in brain aging as a means of developing new strategies for therapies targeted to the neuropathological processes themselves, but also as …

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Transcriptional And Chemical Changes In Soybean Leaves In Response To Long-Term Aphid Colonization, Jessica D. Hohenstein, Matthew E. Studham, Adam Klein, Nik Kovinich, Kia Barry, Young-Jin Lee, Gustavo C. Maclntosh Jan 2019

Transcriptional And Chemical Changes In Soybean Leaves In Response To Long-Term Aphid Colonization, Jessica D. Hohenstein, Matthew E. Studham, Adam Klein, Nik Kovinich, Kia Barry, Young-Jin Lee, Gustavo C. Maclntosh

Faculty & Staff Scholarship

Soybean aphids (Aphis glycines Matsumura) are specialized insects that feed on soybean (Glycine max) phloem sap. Transcriptome analyses have shown that resistant soybean plants mount a fast response that limits aphid feeding and population growth. Conversely, defense responses in susceptible plants are slower and it is hypothesized that aphids block effective defenses in the compatible interaction. Unlike other pests, aphids can colonize plants for long periods of time; yet the effect on the plant transcriptome after long-term aphid feeding has not been analyzed for any plant–aphid interaction. We analyzed the susceptible and resistant (Rag1) transcriptome …

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A Case Of Persistent Asthma Resistant To Available Treatment Options: Management Dilemma, Hasnan M. Ijaz, Waliul Chowdhury, Muhammad U. Lodhi, Qamar Gulzar, Mustafa Rahim Jan 2019

A Case Of Persistent Asthma Resistant To Available Treatment Options: Management Dilemma, Hasnan M. Ijaz, Waliul Chowdhury, Muhammad U. Lodhi, Qamar Gulzar, Mustafa Rahim

Faculty & Staff Scholarship

Asthma affects nearly 300 million people worldwide, with 250,000 associated deaths annually. An estimated 5%-10% of patients have severe asthma, while only 1%-2% presented with treatment-resistant or refractory asthma. Currently, the endotype of asthma is divided into T-helper type 2 (Th2) high and Th2-low inflammation endotypes. The Th2-high endotype is characterized by eosinophilic asthma, while the Th2-low endotype is associated with neutrophilia and a pauci-granulocytic profile. The Th2-low endotype carries a high resistance to corticosteroid and bronchodilator therapy, and these patients typically have a severe and acute-onset of symptoms. We present a 57-year-old nonsmoking female with recurrent intensive care unit …

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The Stem Cell Phenotype Of Aggressive Breast Cancer Cells, Naira V. Margaryan, Hannah Hazard-Jenkins, Mohamad A. Salkeni, Matthew B. Smolkin, James A. Coad, Sijin Wen, Elizabeth A. Seftor, Richard E B Seftor, Mary J C Hendrix Jan 2019

The Stem Cell Phenotype Of Aggressive Breast Cancer Cells, Naira V. Margaryan, Hannah Hazard-Jenkins, Mohamad A. Salkeni, Matthew B. Smolkin, James A. Coad, Sijin Wen, Elizabeth A. Seftor, Richard E B Seftor, Mary J C Hendrix

Faculty & Staff Scholarship

Aggressive cancer cells are characterized by their capacity to proliferate indefinitely and to propagate a heterogeneous tumor comprised of subpopulations with varying degrees of metastatic propensity and drug resistance properties. Particularly daunting is the challenge we face in the field of oncology of effectively targeting heterogeneous tumor cells expressing a variety of markers, especially those associated with a stem cell phenotype. This dilemma is especially relevant in breast cancer, where therapy is based on traditional classification schemes, including histological criteria, differentiation status, and classical receptor markers. However, not all patients respond in a similar manner to standard-of-care therapy, thereby necessitating …

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