Methane Emission From A Tropical Wetland In Ka'au Crater, O'Ahu, Hawai'i,
2010
University of Hawaii
Methane Emission From A Tropical Wetland In Ka'au Crater, O'Ahu, Hawai'i, Maxime Grand, Eric Gaidos
Faculty Publications
Natural tropical wetlands constitute an important but still poorly studied source of atmospheric methane, a powerful greenhouse gas. We measured net methane emission, soil profiles of methane generation and oxidation, and related environmental parameters in a tropical wetland occupying the Ka'au extinct volcanic crater on the Hawaiian island of O'ahu. The wetland has a fluctuating water table with dynamics that can be reproduced using precipitation data and a simple model. Median net methane flux was 117 mg m-2 day-1 and is consistent with measurements at other tropical sites. Net methane flux in the Commelina diffusa—dominated vegetation pattern (honohono) was significantly …
Shearwater Foraging In The Southern Ocean: The Roles Of Prey Availability And Winds,
2010
Australian Antarctic Division,
Shearwater Foraging In The Southern Ocean: The Roles Of Prey Availability And Winds, B Raymond, Scott A. Shaffer, S Sokolov, E Woehler, D P. Costa, L Einoder, M Hindell, G Hosie, M Pinkerton, P M. Sagar, D Scott, A Smith, D R. Thompson, C Vertigan, H Weimerskirch
Faculty Publications, Biological Sciences
Background Sooty (Puffinus griseus) and short-tailed (P. tenuirostris) shearwaters are abundant seabirds that range widely across global oceans. Understanding the foraging ecology of these species in the Southern Ocean is important for monitoring and ecosystem conservation and management. Methodology/Principal Findings Tracking data from sooty and short-tailed shearwaters from three regions of New Zealand and Australia were combined with at-sea observations of shearwaters in the Southern Ocean, physical oceanography, near-surface copepod distributions, pelagic trawl data, and synoptic near-surface winds. Shearwaters from all three regions foraged in the Polar Front zone, and showed particular overlap in the region around 140°E. Short-tailed shearwaters …
Niche Partitioning Among And Within Sympatric Tropical Seabirds Revealed By Stable Isotope Analysis,
2010
Stanford University
Niche Partitioning Among And Within Sympatric Tropical Seabirds Revealed By Stable Isotope Analysis, H S. Young, D J. Mccauley, R Dirzo, R D. Dunbar, Scott A. Shaffer
Faculty Publications, Biological Sciences
The low productivity and unpredictable nature of resources in tropical waters would appear to make resource partitioning among predators difficult. Yet, stable isotope data from the present study suggest that substantial resource partitioning occurs among tropical seabird communities, both between and within species. In the present study, we compared δ13C and δ15N levels among 8 sympatric tropical seabird species. For a subset of these species, we also examined isotopic levels across years, breeding periods, and sexes. When breeding and non-breeding periods were both considered, we found that all species occupied distinct isotopic niches across at least one time period. Resource …
Molecular Tools For Understanding The Population Genetic Effects Of Habitat Restoration On Butterflies,
2010
Western Kentucky University
Molecular Tools For Understanding The Population Genetic Effects Of Habitat Restoration On Butterflies, Joseph R. Marquardt
Mahurin Honors College Capstone Experience/Thesis Projects
No abstract provided.
Leptodactylus Savagei,
2010
University of Richmond
Leptodactylus Savagei, W. R. Heyer, Miriam M. Heyer, Rafael O. De Sá
Biology Faculty Publications
Adult Leptodactylus savagei are large, the head is as wide as long or usually wider than long, and the hind limbs are moderate in length (Table 1; Heyer and Thompson (2000) provided definitions of adult size and leg length categories for Leptodactylus). Male vocal sacs are not visible externally. Sexually active males have hypertrophied forearms, usually 1 large black spine on each thumb, rarely with 1 large spine and a prepollical bump, and a pair of black chest spines. A pair of entire dorsolateral folds extend anteriorly from at least one_half to full distance from eye to groin, the …
Description Of The Tadpole Of Proceratophrys Renalis (Miranda-Ribeiro, 1920) (Anura: Cycloramphidae),
2010
University of Richmond
Description Of The Tadpole Of Proceratophrys Renalis (Miranda-Ribeiro, 1920) (Anura: Cycloramphidae), Filipe Augusto C. Do Nascimento, Barnagleison S. Lisboa, Gabriel O. Skuk, Rafael O. De Sá
Biology Faculty Publications
The tadpole of Proceratophrys renalis is described based on specimens from Maceió, State of Alagoas, northeastern Brazil. At stage 35 the body is slightly dorso-ventrally depressed, ovoid in lateral, dorsal, and ventral views. Oral disc is ventral with lateral emarginations, surrounded by a single row of marginal papillae with a large gap on the upper labium. Labial tooth row formula is 2(2)/3(1). The analysis of internal oral anatomy revealed two possible characters that readily distinguish P. renalis from P. boiei, supporting the recent ressurection of P. renalis. Comparisons with available descriptions of the larvae for other species in the …
An Extraordinary Example Of Photokarren In A Sandstone Cave, Cueva Charles Brewer, Chimantá Plateau, Venezuela: Biogeomorphology On A Small Scale,
2010
Carleton University
An Extraordinary Example Of Photokarren In A Sandstone Cave, Cueva Charles Brewer, Chimantá Plateau, Venezuela: Biogeomorphology On A Small Scale, Joyce Lundberg, Donald A. Mcfarlane, Charles Brewer-Carias
WM Keck Science Faculty Papers
A distinctive suite of small-scale erosional forms that are oriented towards the light occur close to the entrance of Cueva Charles Brewer, a large cave in a sandstone tepui, in SE Venezuela. These are the third example of photokarren ever studied in the world, the other two being from Borneo and Ireland. They are the only photokarren ever described from sandstone, and the only example from a non-carbonate environment. The host rock is a poorly-lithified unit of the Precambrian quartz arenite of the Roraima Supergroup. The forms are all oriented towards the light at 30° regardless of rock surface orientation. …
A Unique Population Of Cave Bears (Carnivora: Ursidae) From The Middle Pleistocene Of Kents Cavern, England, Based On Dental Morphometrics,
2010
Claremont McKenna College; Pitzer College; Scripps College
A Unique Population Of Cave Bears (Carnivora: Ursidae) From The Middle Pleistocene Of Kents Cavern, England, Based On Dental Morphometrics, Donald A. Mcfarlane, Martin Sabol, Joyce Lundberg
WM Keck Science Faculty Papers
The ‘breccia’ stratum from Kents (we follow local tradition in using the form ‘Kents’, without an apostrophe) Cavern, England, has been well known for its rich yield of cave-bear material since excavations began in the mid-19th century. Recent work has established that the bears are of latest MIS 12 or earliest MIS 11 age. A life table based on a collection of 67 molariform teeth is consistent with the use of the cave as a hibernaculum. Univariate and morphological assessment of the teeth shows an unusual range of primitive and more derived characters. Multivariate morphometric analysis of cave-bear teeth from …
Plasticity Of Acquired Secondary Metabolites In Clathria Prolifera (Demospongia: Poecilosclerida): Putative Photoprotective Role Of Carotenoids In A Temperate Intertidal Sponge,
2010
University of Richmond
Plasticity Of Acquired Secondary Metabolites In Clathria Prolifera (Demospongia: Poecilosclerida): Putative Photoprotective Role Of Carotenoids In A Temperate Intertidal Sponge, Jonathan D. Dattelbaum, Drew Sieg, Malcolm Hill, Chris M. Manieri, Giles Thomson
Chemistry Faculty Publications
Several marine sponges sequester high concentrations of carotenoids in their tissues. The diversity of carotenoid compounds has been described in detail for a handful of species, but to date, little attention has been paid to natural variability in the concentration and constituency of carotenoid pools. Also lacking are experimental tests of some of the proposed adaptive benefits of carotenoids to the sponge. To address some of these deficits in our understanding of sponge ecology, we used a combination of analytic chemistry, field surveys, and manipulative experiments to determine what function these compounds might play. Attention was focused on the common, …
Grassland Root Communities: Species Distributions And How They Are Linked To Aboveground Abundance.,
2010
Syracuse University
Grassland Root Communities: Species Distributions And How They Are Linked To Aboveground Abundance., Douglas Frank, Alyssa Pontes, Eleanor M. Maine, Julie Caruana, Ramesh Raina, Surahbi Raina, Jason Fridley
Biology - All Scholarship
There is little comprehensive information on the distribution of root systems among coexisting species, despite the expected importance of those distributions in determining the composition and diversity of plant communities. This gap in knowledge is particularly acute for grasslands, which possess large numbers of species with morphologically indistinguishable roots. In this study we adapted a molecular method, fluorescent fragment length polymorphism, to identify root fragments and determine species root distributions in two grasslands in Yellowstone National Park. Aboveground biomass was measured and soil cores (2 cm diam) were collected to 40 cm and 90 cm in an upland, dry grassland …
Substrate Specificity Of The Tim22 Mitochondrial Import Pathway Revealed With Small Molecule Inhibitor Of Protein Translocation,
2010
Loyola Marymount University
Substrate Specificity Of The Tim22 Mitochondrial Import Pathway Revealed With Small Molecule Inhibitor Of Protein Translocation, Deepa V. Dabir
Biology Faculty Works
The TIM22 protein import pathway mediates the import of membrane proteins into the mitochondrial inner membrane and consists of two intermembrane space chaperone complexes, the Tim9-Tim10 and Tim8-Tim13 complexes. To facilitate mechanistic studies, we developed a chemical-genetic approach to identify small molecule agonists that caused lethality to a tim10-1 yeast mutant at the permissive temperature. One molecule, MitoBloCK-1, attenuated the import of the carrier proteins including the ADP/ATP and phosphate carriers, but not proteins that used the TIM23 or the Mia40/ Erv1 translocation pathways. MitoBloCK-1 impeded binding of the Tim9-Tim10 complex to the substrate during an early stage of translocation, …
A Model For Understanding Epilepsy In Peromyscus,
2010
University of South Carolina
A Model For Understanding Epilepsy In Peromyscus, Kevin Ryan, Gabor Szalai
Journal of the South Carolina Academy of Science
No abstract provided.
Tubulin Evolution In Insects: Gene Duplication And Subfunctionalization Provide Specialized Isoforms In A Functionally Constrained Gene Family,
2010
University of Dayton
Tubulin Evolution In Insects: Gene Duplication And Subfunctionalization Provide Specialized Isoforms In A Functionally Constrained Gene Family, Mark G. Nielsen, Sudhindra R. Gadagkar, Lisa Gutzwiller
Biology Faculty Publications
Background: The completion of 19 insect genome sequencing projects spanning six insect orders provides the opportunity to investigate the evolution of important gene families, here tubulins. Tubulins are a family of eukaryotic structural genes that form microtubules, fundamental components of the cytoskeleton that mediate cell division, shape, motility, and intracellular trafficking. Previous in vivo studies in Drosophila find a stringent relationship between tubulin structure and function; small, biochemically similar changes in the major alpha 1 or testis-specific beta 2 tubulin protein render each unable to generate a motile spermtail axoneme. This has evolutionary implications, not a single non-synonymous substitution is …
Contrasting Patterns Of Phylogeographic Relationships In Sympatric Sister Species Of Ironclad Beetles (Zopheridae: Phloeodes Spp.) In California's Transverse Ranges,
2010
Clemson University
Contrasting Patterns Of Phylogeographic Relationships In Sympatric Sister Species Of Ironclad Beetles (Zopheridae: Phloeodes Spp.) In California's Transverse Ranges, Michael S. Caterino, Maxi Polihronakis
Publications
Comparative phylogeography of sympatric sibling species provides an opportunity to isolate the effects of geography and demographics on the evolutionary history of two lineages over the same, known time scale. In the current study, we investigated the phylogeographic structure of two zopherid beetle species, Phloeodes diabolicus and P. plicatus, where their ranges overlap in California's Transverse Ranges.
Cellular And Molecular Dissection Of Pluripotent Adult Somatic Stem Cells In Planarians,
2010
Wright State University - Main Campus
Cellular And Molecular Dissection Of Pluripotent Adult Somatic Stem Cells In Planarians, Norito Shibata, Labib Rouhana, Kiyokazu Agata
Biological Sciences Faculty Publications
Freshwater planarians, Plathelminthes, have been an intriguing model animal of regeneration studies for more than 100 years. Their robust regenerative ability is one of asexual reproductive capacity, in which complete animals develop from tiny body fragments within a week. Pluripotent adult somatic stem cells, called neoblasts, assure this regenerative ability. Neoblasts give rise to not only all types of somatic cells, but also germline cells. During the last decade, several experimental techniques for the analysis of planarian neoblasts at the molecular level, such as in situ hybridization, RNAi and fluorescence activated cell sorting, have been established. Moreover, information about genes …
Dynamic Genomes Of Eukaryotes And The Maintenance Of Genomic Integrity,
2010
University of Massachusetts Amherst
Dynamic Genomes Of Eukaryotes And The Maintenance Of Genomic Integrity, Laura Wegener Parfrey, Laura A. Katz
Biological Sciences: Faculty Publications
Many biologists assume that eukaryotic genomes are transmitted stably between generations with only minor variations. Yet, this presumed constancy is at odds with data indicating that eukaryotic genomes are dynamic, varying extensively in content among many different lineages. Thus, rather than being constant, genomes vary considerably within individuals during their lifetimes.
Gender Dimorphism In The Exercise-Naïve Murine Skeletal Muscle Proteome,
2010
Smith College
Gender Dimorphism In The Exercise-Naïve Murine Skeletal Muscle Proteome, Lauren Ann Metskas, Mohini Kulp, Stylianos P. Scordilis
Biological Sciences: Faculty Publications
Skeletal muscle is a plastic tissue with known gender dimorphism, especially at the metabolic level. A proteomic comparison of male and female murine biceps brachii was undertaken, resolving an average of 600 protein spots of MW 15-150 kDa and pI 5-8. Twenty-six unique full-length proteins spanning 11 KOG groups demonstrated statistically significant (p<0.05) abundance differences between genders; the majority of these proteins have metabolic functions. Identified glycolytic enzymes demonstrated decreased abundance in females, while abundance differences in identified oxidative phosphorylation enzymes were specific to the proteins rather than to the functional group as a whole. Certain cytoskeletal and stress proteins showed specific expression differences, and all three phosphorylation states of creatine kinase showed significant decreased abundance in females. Expression differences were significant but many were subtle (≤ 2-fold), and known hormonally-regulated proteins were not identified. We conclude that while gender dimorphism is present in non-exercised murine skeletal muscle, the proteome comparison of male and female biceps brachii in exercise-naive mice indicates subtle differences rather than a large or obviously hormonal dimorphism.
The Pneumococcal Serine-Rich Repeat Protein Is An Intra-Species Bacterial Adhesin That Promotes Bacterial Aggregation In Vivo And In Biofilms,
2010
Binghamton University--SUNY
The Pneumococcal Serine-Rich Repeat Protein Is An Intra-Species Bacterial Adhesin That Promotes Bacterial Aggregation In Vivo And In Biofilms, Carlos J. Sanchez, Pooja Shivshankar, Kim Stol, Samuel Trakhtenbroit, Paul M. Sullam, Karin Sauer, Peter W.M. Hermans, Carlos J. Orihuela
Biological Sciences Faculty Scholarship
The Pneumococcal serine-rich repeat protein (PsrP) is a pathogenicity island encoded adhesin that has been positively correlated with the ability of Streptococcus pneumoniae to cause invasive disease. Previous studies have shown that PsrP mediates bacterial attachment to Keratin 10 (K10) on the surface of lung cells through amino acids 273-341 located in the Basic Region (BR) domain. In this study we determined that the BR domain of PsrP also mediates an intra-species interaction that promotes the formation of large bacterial aggregates in the nasopharynx and lungs of infected mice as well as in continuous flow-through models of mature biofilms. Using …
Building Better Scientists Through Cross-Disciplinary Collaboration In Synthetic Biology: A Report From The Genome Consortium For Active Teaching Workshop 2010,
2010
University of Mary Washington
Building Better Scientists Through Cross-Disciplinary Collaboration In Synthetic Biology: A Report From The Genome Consortium For Active Teaching Workshop 2010, Michael J. Wolyniak, Consuelo J. Alvarez, Vidya Chandrasekaran, Theresa M. Grana, Andrea Holgado, Christopher J. Jones, Robert W. Morris, Anil L. Pereira, Joyce Stamm, Talitha M. Washington, Yixin Yang
Biological Sciences Research
A common problem faced by primarily undergraduate institutions is the lack of funding and material support needed to adequately expose students to modern biology, including synthetic biology. To help alleviate this problem, the Genome Consortium for Active Teaching (GCAT) was founded in 2000 by Malcolm Campbell at Davidson College to bring genomics into the undergraduate curriculum. GCAT’s first tangible activity was to serve as a central clearinghouse both for the purchase and reading of DNA microarrays and for information on how to execute genomics experiments at undergraduate institutions. In response to the evolution of molecular biology in the last decade, …
Chapter 26 – Multiple Color Single Molecule Tirf Imaging And Tracking Of Maps And Motors,
2010
Washington University in St Louis
Chapter 26 – Multiple Color Single Molecule Tirf Imaging And Tracking Of Maps And Motors, Jennifer L. Ross, Ram Dixit
Biology Faculty Publications & Presentations
Microtubules are part of a complex mechano-chemical network inside cells. In order to understand how the components of these systems work together, careful in vitro experiments must be performed with added complexity. These experiments can ideally image all the interacting species. In order to image these molecules, multiple-color fluorescence imaging can be performed. In this chapter, we describe some methods for performing multiple-color single molecule fluorescence imaging using total internal reflection fluorescence microscopy. We give several specific examples of species of microtubule-associate proteins and motors that can be examined with detailed protocols for labeling, purification, and imaging.
