Physical Sciences and Mathematics Commons^™

Integrated Step Selection Analysis: Bridgingthe Gap Between Resource Selection And Animal Movement, Tal Avgar, Jonathan R. Potts, Mark A. Lewis, Mark S. Boyce

Wildland Resources Faculty Publications

A resource selection function is a model of the likelihood that an available spatial unit will be used by an animal, given its resource value. But how do we appropriately define availability? Step selection analysis deals with this problem at the scale of the observed positional data, by matching each ‘used step’ (connecting two consecutive observed positions of the animal) with a set of ‘available steps’ randomly sampled from a distribution of observed steps or their characteristics. Here we present a simple extension to this approach, termed integrated step selection analysis (iSSA), which relaxes the implicit assumption that observed movement …

From JEff=1/2 Insulator To P-Wave Superconductor In Single-Crystal Sr2Ir1−XRuXO4 (0≤X≤1), Shujuan Yuan, Saicharan Aswartham, Jsaminka Terzic, H. Zheng, H. D. Zhao, P. Schlottmann, Gang Cao

Physics and Astronomy Faculty Publications

Sr₂IrO₄ is a magnetic insulator assisted by strong spin-orbit coupling (SOC) whereas Sr₂RuO₄ is a p-wave superconductor. The contrasting ground states have been shown to result from the critical role of the strong SOC in the iridate. Our investigation of structural, transport, and magnetic properties reveals that substituting 4dRu⁴⁺(4d⁴) ions for 5dIr⁴⁺(5d⁵) ions in Sr₂IrO₄ directly adds holes to the t_2g bands, reduces the SOC, and thus rebalances the competing energies in single-crystal Sr …

Gamma-Rays From The Quasar Pks 1441+25: Story Of An Escape, P. T. Reynolds, Et Al

Physical Sciences Publications

Outbursts from gamma-ray quasars provide insights on the relativistic jets of active galactic nuclei and constraints on the diffuse radiation fields that fill the universe. The detection of significant emission above 100 GeV from a distant quasar would show that some of the radiated gamma-rays escape pair-production interactions with low-energy photons, be it the extragalactic background light (EBL), or the radiation near the supermassive black hole lying at the jet's base. VERITAS detected gamma-ray emission up to ~200 GeV from PKS 1441+25 (z = 0.939) during 2015 April, a period of high activity across all wavelengths. This observation of …

The Force Of Water: Columbia After The Flood, Rebecca Johnson

Senior Theses

Nearly two months have passed, and South Carolina is still recovering from the unprecedented inundation of rain that pelted down in early October. Record amounts of precipitation pounded the state over just a few days, resulting in the flooding and erosion of land, the deterioration of public infrastructure and the loss of human life and capital.

The worst of it was in the capital city. Columbia recorded the highest water levels and the highest number of fatalities of all the affected areas. The city’s utilities could not handle the torrent of water: dams were destroyed, canals were compromised, roads were …

Quaternary Chronology And Stratigraphy Of Mickey Springs, Oregon, Leslie Allen Mowbray

Dissertations and Theses

Mickey Springs in the Alvord Desert, southeast Oregon, is analogous to other Basin and Range hydrothermal systems where the requisite conditions of heat source and permeable pathways are met through crustal thinning due to normal faulting. This study examines the morphology and lifespan of near-surface spring features through use of ground penetrating radar, thermoluminescence (TL) dating, and elevation modeling. Duration of hydrothermal activity at Mickey Springs has not previously been determined, and age determinations of sinter at the site are conflicting. The reason for and timing of this change in silica saturation in the hydrothermal fluid has not been resolved. …

Engineering A Healthier Watershed: Middle School Students Use Engineering Design To Lessen The Impact Of Their Campus' Impervious Surfaces On Their Local Watershed, Elizabeth Claire Gardner

Dissertations and Theses

It is important that students understand not only how their local watershed functions, but also how it is being impacted by impervious surfaces. Additionally, students need experience exploring the scientific and engineering practices that are necessary for a strong STEM background. With this knowledge students can be empowered to tackle this real and local problem using engineering design, a powerful practice gaining momentum and clarity through its prominence in the recent Framework for K-12 Science Education. Twenty classes of suburban sixth-graders participated in a new five-week Watershed Engineering Design Unit taught by their regular science teachers. Students engaged in scientific …

Where Is The Warfare? The Impact Of Sola Scriptura On Science And Religion Dialogue, William James Richardson

Senior Theses

I have two aims with the publication of this thesis. The first is to contribute to the recent scholarly work that seeks to discredit the popular, yet fallacious, warfare model of science and religion. A nuanced investigation shows that the warfare evident in popular discourse cannot easily be attributed to a conflict between the essence of science and religion. Rather “science” and “religion” are interpreted as something else entirely. The New Atheists equate science with scientism, and religion is often associated with the Biblical inerrantism of many Protestant Christians. Both ideologies are grounded in an empiricist epistemological framework founded by …

Momentum Of Particles From Time-Of-Flight Measurements, Joseph Best

Senior Theses

In order to find the momentum of particles from time of flight measurements, I used a program called Geant4 to simulate experiments. I made a simple two detector setup, and I recreated a real world experiment. I spent a lot of time learning to code in C++ so I could use Geant4 correctly. I simulated these experiments shooting electrons, muons, and pions through the geometry and measured the time at two points in their flight. Subtracting the second time from the first gave me the time of flight distribution for each particle. I used ROOT to draw histograms of the …

Applying Bayesian Machine Learning Methods To Theoretical Surface Science, Shane Carr

McKelvey School of Engineering Theses & Dissertations

Machine learning is a rapidly evolving field in computer science with increasingly many applications to other domains. In this thesis, I present a Bayesian machine learning approach to solving a problem in theoretical surface science: calculating the preferred active site on a catalyst surface for a given adsorbate molecule. I formulate the problem as a low-dimensional objective function. I show how the objective function can be approximated into a certain confidence interval using just one iteration of the self-consistent field (SCF) loop in density functional theory (DFT). I then use Bayesian optimization to perform a global search for the solution. …

A Preliminary Assessment Of Water Partitioning And Ecohydrological Coupling In Northern Headwaters Using Stable Isotopes And Conceptual Runoff Models, James P. Mcnamara

Geosciences Faculty Publications and Presentations

We combined a conceptual rainfall-runoff model and input–output relationships of stable isotopes to understand ecohydrological influences on hydrological partitioning in snow-influenced northern catchments. Six sites in Sweden (Krycklan), Canada (Wolf Creek; Baker Creek; Dorset), Scotland (Girnock) and the USA (Dry Creek) span moisture and energy gradients found at high latitudes. A meta-analysis was carried out using the Hydrologiska Byråns Vattenbalansavdelning (HBV) model to estimate the main storage changes characterizing annual water balances. Annual snowpack storage importance was ranked as Wolf Creek > Krycklan > Dorset > Baker Creek > Dry Creek > Girnock. The subsequent rate and longevity of melt were reflected in calibrated parameters …

Investigating The Complexity Of Impact Crater Ejecta, Michael Raymond Zanetti

Arts & Sciences Electronic Theses and Dissertations

The formation of an impact crater ejecta blanket can be viewed as a form of organized chaos. Material that is ejected from a crater is heavily brecciated, but falls back to the surface along ballistic trajectories, generally preserving an inverted sense of the original stratigraphy. As the ejecta re-impacts the area surrounding the crater it forms a thick blanket of ejected material and reworked target surface that gradually thins away from the crater rim. Within the crater, crater modification processes, such as wall terrace formation and impact melt drainage, transform the crater in expectable ways.

The approach adopted in this …

Optical-Optical Double Resonance, Laser Induced Fluorescence, And Revision Of The Signs Of The Spin-Spin Constants Of The Boron Carbide (Bc) Free Radical, Fumie X. Sunahori, Ramya Nagarajan, Dennis J. Clouthier

Chemistry Faculty Publications

The cold boroncarbide free radical (BC X  ⁴Σ⁻) has been produced in a pulsed discharge free jet expansion using a precursor mixture of trimethylborane in high pressure argon. High resolution laser induced fluorescencespectra have been obtained for the B  ⁴Σ⁻–X  ⁴Σ⁻ and E  ⁴Π–X  ⁴Σ⁻ band systems of both ¹¹BC and ¹⁰BC. An optical-optical double resonance (OODR) scheme was implemented to study the finer details of both band systems. This involved pumping a single rotational level of the B state with one laser and then …

A Generally Efficient Targeted Minimum Loss Based Estimator, Mark J. Van Der Laan

U.C. Berkeley Division of Biostatistics Working Paper Series

Suppose we observe n independent and identically distributed observations of a finite dimensional bounded random variable. This article is concerned with the construction of an efficient targeted minimum loss-based estimator (TMLE) of a pathwise differentiable target parameter based on a realistic statistical model.

The canonical gradient of the target parameter at a particular data distribution will depend on the data distribution through an infinite dimensional nuisance parameter which can be defined as the minimizer of the expectation of a loss function (e.g., log-likelihood loss). For many models and target parameters the nuisance parameter can be split up in two components, …

A Continuum From Clear To Cloudy Hot-Jupiter Exoplanets Without Primordial Water Depletion, David K. Sing, Jonathan J. Fortney, Nikolay Nikolov, Hannah R. Wakeford, Tiffany Kataria, Thomas M. Evans, Suzanne Aigrain, Gilda E. Ballester, Adam Burrows, Drake Deming, Jean-Michel Désert, Neale P. Gibson, Gregory W. Henry, Catherine M. Huitson, Heather A. Knutson, Alain Lecavelier Des Etangs, Frederic Pont, Adam P. Showman, Alfred Vidal-Madjar, Michael H. Williamson, Paul A. Wilson

Information Systems and Engineering Management Research Publications

Thousands of transiting exoplanets have been discovered, but spectral analysis of their atmospheres has so far been dominated by a small number of exoplanets and data spanning relatively narrow wavelength ranges (such as 1.1–1.7 micrometres). Recent studies show that some hot-Jupiter exoplanets have much weaker water absorption features in their near-infrared spectra than predicted. The low amplitude of water signatures could be explained by very low water abundances, which may be a sign that water was depleted in the protoplanetary disk at the planet’s formation location, but it is unclear whether this level of depletion can actually occur. Alternatively, these …

The Performance Of Random Prototypes In Hierarchical Models Of Vision, Kendall Lee Stewart

Dissertations and Theses

I investigate properties of HMAX, a computational model of hierarchical processing in the primate visual cortex. High-level cortical neurons have been shown to respond highly to particular natural shapes, such as faces. HMAX models this property with a dictionary of natural shapes, called prototypes, that respond to the presence of those shapes. The resulting set of similarity measurements is an effective descriptor for classifying images. Curiously, prior work has shown that replacing the dictionary of natural shapes with entirely random prototypes has little impact on classification performance. This work explores that phenomenon by studying the performance of random prototypes on …

Defining The Effects Of Gdf-2 On TgfB Signaling In Tumorigenic Epithelial Cells, Tirthankar Bandyopadhyay

Theses and Dissertations

Cancer cells can be viewed as such cells, which have disrupted/aberrant signaling pathways for maintaining cellular homoeostasis. Identifying such altered signaling mechanisms can help us target these pathways in a better way. GDF-2 (Growth and differentiation factor – 2) or BMP9 (Bone morphogenetic protein – 9), a multifunctional cytokine, is a member of the Bone Morphogenetic Protein subfamily, under TGFβ superfamily, with roles distinct from BMP2/4/7. While GDF-2 is known to be one of the most potent ectopic inducers of bone and cartilage formation, it rose to significance with the identification of its receptor ALK1 in endothelial cells. TGFβ’s role …

Fast Methods For Variable-Coefficient Peridynamic And Non-Local Diffusion Models, Che Wang

Theses and Dissertations

In previous studies, scientists developed the classical solid mechanic theory. The model has been widely used in scientific research and practical production. The main assumption of the classical theory of solid mechanics is that all internal forces act through zero distance. Because of this assumption, the mathematical model always leads to partial differential equations, which meet with problems when describing the spontaneous formation of discontinuities and other singularities. A peridynamic model was proposed as a reformation of solid mechanics [40, 41, 43, 44, 45], which leads to a non-local framework that does not explicitly involve the notion of deformation gradients, …

Modeling, Simulation, And Applications Of Fractional Partial Differential Equations, Wilson Cheung

Theses and Dissertations

The Black-Scholes model is commonly used to track the price of European options with respect to maturity in many financial markets. This model degenerates into a partial differential equation that relates the European-style option price to the underlying price and time of expiry. Black-Scholes assumes that underlying prices satisfy a geometric Brownian motion.

After the U.S. stock market crash of 1987, this assumption becomes inaccurate as it fails to represent the behavior of S&P 500 European vanilla option prices. Specifically, under the measure of moneyness, the volatility smirk does not flatten out and the resulting conditional return distribution does not …

Nmr Studies Of Solvent-Free Ceramic Composite Polymer Electrolytes—A Brief Review, Marc B. Berman, Steven Greenbaum

Publications and Research

Polyether-based polymer electrolytes containing ceramic inorganic oxide fillers often exhibit improved mechanical and ion transport properties compared to their filler-free counterparts. The nature of local scale interactions that give rise to these enhanced properties is explored by nuclear magnetic resonance measurements.

Two-Dimensional Transient Spectroscopy Measuring Heterogeneity In Electronic And Rotational Dynamics, Haorui Wu

Theses and Dissertations

Multiple population-period transient spectroscopy (MUPPETS) is a picosecond, time resolved experiment that uses a sequence of six laser pulses. It was previously known that MUPPETS could measure heterogeneity in electronic-state decay. This dissertation presents two projects that extend MUPPETS to new processes. One process is the extension from 2-level system into 3-level system, another new process extends the kinetics from electronic decay to rotational decay. In addition, a third, ongoing project on rotational dynamics in ionic liquids will also be discussed briefly. The first project consisted of two main parts. The first part focused on the biexciton decay in semiconductor …

Approaching Aromatic Interactions With Small Molecule Model Systems: Assessing N-Heteroarene In ∏ -Stacking And Ch-∏ Interactions, Crystal Engineering Of Atropisomeric Rotors, And Developing Responsive Organic Charge-Transfer Complex, Ping Li

Theses and Dissertations

Non-covalent interactions involving aromatic species are important in many areas in chemistry, biochemistry, and materials sciences. During the past two decades, small molecule model systems have emerged as a powerful tool to advance our knowledge of the stability trends for aromatic interactions in the condensed phase. Among these, the Cshape N-arylimide molecular balances developed by our laboratory have proven to be one most successful and versatile model systems that can be readily adapted to investigate various types of aromatic interactions. These molecular balances are particularly apt at isolating and accurately measuring the targeted weak aromatic interaction energies for different geometries. …

Optical Spectroscopy And Chemometrics For Discrimination Of Dyed Textile Fibers And Magnetic Audio Tapes, Nathan C. Fuenffinger

Theses and Dissertations

This dissertation focuses on the application of both novel and standard chemometric approaches toward societal problems of interest in the areas of forensic science and cultural heritage preservation. Microspectrophotometry (MSP), a technique enabling measurements of absorption of electromagnetic radiation by microscopic materials in the ultraviolet-visible (UV-Vis) region, is widely used by forensic examiners for comparisons of metameric textile fibers. These comparisons are often hindered, however, by the raw or normalized spectra showing little detail or having few points of comparison. Derivative preprocessing can enhance structure in some instances. We have demonstrated through the use of multivariate statistics that derivatives are …

Hydroxy Polybenzimidazoles For High Temperature Fuel Cells And The Solution Polymerization Of Polybenzimidazole, Kayley Fishel

Theses and Dissertations

In this dissertation, two different hompolymers of polybenzimidazole (PBI) containing hydroxyl functional units were synthesized via the PPA Process to produce gel membranes. These polymers and their phosphoric acid doped membranes were characterized to further explore structure-property relationships in functionalized PBI's. Fuel cell performance of the doped membranes was evaluated and compared to previously reported PBI membrane chemistries. Copolymers of p-OH PBI and para-PBI were prepared at five different copolymer compositions to examine the effects of hydroxy content on membrane properties and compared to the respective homopolymers. The reactivity of the hydroxy groups and the formation of phosphate bridges were …

Optimized Spectral Processing Of Infrared Diffuse Reflection Spectra For The Detection Of Blood On Fabric, Stephanie Ann Dejong

Theses and Dissertations

The detection of bodily fluids such as blood on interfering backgrounds is important to the forensic community. Luminol, which participates in a chemiluminescent reaction with the heme groups of blood, is one of the most commonly used presumptive tests. Luminol has a few drawbacks, including the requirement of use in a dark environment and potential to degrade the amount of recoverable DNA in blood stains. A potential complementary method is infrared (IR) spectroscopy. These two methods are compared in this work. Infrared diffuse reflection (DR) spectroscopy works well to measure the IR spectrum of samples that are highly absorbing or …

Novel Block Copolymer Architectures For Lithography-Relevant Self-Assembly, Jeffery Hakim Hayat

Theses and Dissertations

This dissertation is focused on the synthesis, characterization, self-assembly, and materials processing of various functionalized block copolymer systems. A variety of monomers were prepared and polymerized through various polymerization techniques including atom transfer radical polymerization, reversible addition-fragmentation chain transfer polymerization, and ring-opening metathesis polymerization. Self-assembly of the functionalized block copolymers led to well-defined nanostructures in bulk and thin films. These materials have the capability to be utilized in various applications including ordered catalysts and templates for nanolithography. In Chapter 1, the overall background of diblock and triblock copolymers and their preparation methods is in this dissertation. Major research objectives of …

Supramolecular Coordination Networks Of S- And F-Block Metals Featuring The 1,8-Naphthalimide Tecton, Andrew Paul Leitner

Theses and Dissertations

The reactions of (S)-2-(1,8-naphthalimido)propanoic acid (HLala), and (S)-2-(1,8- naphthalimido)-3-hydroxypropanoic acid (HLser), protonated forms of ligands that contain a carboxylate donor group, an enantiopure chiral center and a 1,8-naphthalimide π...π stacking supramolecular tecton and in the case of HLser an alcohol functional group, with the appropriate alkali metal hydroxide followed by a variety of crystallization methods leads to the formation of crystalline K(Lala)(MeOH) (1), K(Lala)(H2O) (2), Na(Lala)(H2O) (3), KLser (4), CsLser (5) and CsLala (6). Each of these new complexes has a solid state structure based on six-coordinate metals linked into homochiral helical rod SBU central cores. In addition to the …

Spectroscopy And Chemometrics For Cultural Heritage And Forensics: Conservation Of Magnetic Tape By Identifying Degraded Polymer Signatures; And Characterizing The Chemiluminescent Reaction Of Luminol With Blood, Brianna Marie Cassidy

Theses and Dissertations

The first half of this manuscript focuses on the identification of degraded magnetic tape using attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR) and multivariate statistics. For several decades before the digital era, magnetic tape was the dominant audio and visual recording medium. A majority of magnetic tapes contain polyester urethane (PEU) binders, which are known to degrade via hydrolysis, making the retrieval of recorded data difficult and at times impossible. Degraded tapes are currently identified through visual inspection followed by playback on vintage equipment. However, if degraded tapes are played, they are likely to stick and shed onto player …

Optical Second Harmonic Generation In The Batio3 Phase On Magnetically Aligned Multiferroic Nanofibers, Katia Gasperi

Theses and Dissertations

Multiferroic materials enable the exploration of electrical control of magnetic properties and vice versa. Their increasing interest is especially due to their potential applications in the industry of information storage. Thanks to recent progress in nanotechnology, they have also been found to have many other applications such as transducers and sensors, and they already occupy a unique place in the biomedical field. The objective of this project is to study multiferroic nanofibers made of cobalt ferrite CoFe2O4 (CFO) and barium titanate BaTiO3 (BTO) with a specific focus in the characterization of the ferroelectric phase. We researched the state of knowledge …

A Survey Of The Kinetic Monte Carlo Algorithm As Applied To A Multicellular System, Michael Richard Laughlin

Theses and Dissertations

We explore the origins and implementation of the Kinetic Monte Carlo method on a system of cells suspended in a liquid media. The situation presented herein has applications in the emerging field of biofabrication, which may have lasting impacts in medical science. The theory behind the method is explained in detail, starting with its emergence in the 1960s, and two major improvements to the scaling of the method are presented, along with a restriction to a special case. Finally, we give the results of several simulations.

Comparing The Geography Of Environmental Justice Guidelines, Fish Consumption Waterbodies, And Land Use/Land Cover In South Carolina, Matthew James Neet

Theses and Dissertations

Environmental justice (EJ) grew out of the Civil Rights movement of the 1960s, as well as grass roots organizations during the 1980s and early 1990s. However, it was not until President William J. Clinton signed Executive Order (EO) 12898 in 1994 that EJ became an official governmental policy. With this directive, federal agencies made EJ part of their daily operations. EO 12898 had two overriding goals, the fair treatment and meaningful involvement of all populations. As part of these goals, minority, low-income, and native populations would be analyzed for any disproportionate and adverse impacts on human or environmental health. Despite …